CSPI06G05630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 5075459 .. 5075632 (+)
RNA-Seq Expression	CSPI06G05630
Synteny	CSPI06G05630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

mRNA sequence

ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

Coding sequence (CDS)

ATGGGCCTAGAGGATATGGTTGAACGGTCAGATCCAGCAATTGGGCTGGACCCACCCCAACACAAAAGTGACGGACACGGGAAGCTTGGTAGGGTGCATCACATGCGAGTAACCCCTACATTCCCCACGAATGAGATTCTTAGTGGGCTACGTAAAAAGCCCATCCACGTTTGA

Protein sequence

MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV*

Homology

[Close]

BLAST of CSPI06G05630 vs. ExPASy TrEMBL
Match: A0A0A0KEL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075170 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 58
          MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV
Sbjct: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 57

[Close]

BLAST of CSPI06G05630 vs. NCBI nr
Match: KGN46216.1 (hypothetical protein Csa_005588 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 58
          MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV
Sbjct: 1  MGLEDMVERSDPAIGLDPPQHKSDGHGKLGRVHHMRVTPTFPTNEILSGLRKKPIHV 57

The following BLAST results are available for this feature:

BLAST of CSPI06G05630 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G05630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEL7	5.3e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G075170 PE=4 SV=1	[more]

BLAST of CSPI06G05630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46216.1	1.1e-25	100.00	hypothetical protein Csa_005588 [Cucumis sativus]	[more]

BLAST of CSPI06G05630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05630.1	CSPI06G05630.1	mRNA