CSPI06G05330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 4849490 .. 4851007 (-)
RNA-Seq Expression	CSPI06G05330
Synteny	CSPI06G05330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCAGGCCTCGATTCGTATTGGGCTAATGGGCCAGATTATTTGGGCCTGTTAAAAAACGCCGTCGCTTTAGCCTATAAATCATAGGATCAAAATGATGTTTGAGAACGGAGAATTAACAAATTTTCTCTCTGAAGCCGCAGGACGTCGAAGCTAAGTTCCGCAGCTTGAGCTTCGTAAGTAGCTCCGAAACTTCAAAGCTGAAACCATCTTTGTTCTTTTGGAAAAGAATAATGGATACATAATTATGTTAATATCATTCTTTTTCTTGTTTGGATTTTCAGTTGAAATGAAGTTTCTAGACTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGGTTCCATGGAATTGTTCATGATTAAATCGGGCTTCTGTGTGAGAACCATCCTTTTTTCTCTCTCTTCCTCAGTCCACCATTGTTAATTCATTTTCTTTCCTGTATTTAATTGAAGTACCTTTGGTTTTGGCATTTCGTCTTAATTTATTTATTTATTATTATTATTATTTTTATCTTTCGTTCAATAAATTGTAGCAAATTGATTCTCTGCAAGAATTGGAGGTTTGTCAATAGTTATTTTTTAGGGTTTTGAGTGTTAATTAATTCTAAATTTATCTTCGTCCATTAGCTTTAGGTTTTTGGGTCAACTAGTGGACTGTATGTTAATAGCTGGTCCAGTGTTCACGTACGTTAGACGGTGTTTTGAGGTTGGGTTGGGTAGATTCTTAAAATTTTTTACAATTTATGTTCAAGTAGTTTGAAGAATTTTTGCTTCCAATAAATCCGAACGAACTTTTGATTTTGGTGTTGGATAGATATCAAGAAGTGAATAAGTTGAATTGAGTGCAAGTTGTTATGTTTTATGTTGAAAACGTTATTAAGGAACATTAAAGACCAACAATAAGCCTCCAATATAATTAGCCAAAATCGGGATGCAGAGTGACAATGTAAAAATAATGTATATAAAGTAAACGACCTTGATATTCAGCACTATATTCACACCTGAAATGTTTTCTAAAGCTCAAGGCGAATGAACTTTTTTTGTTCTTCTTTGGAGGCTTTGGTTTGAAGAGTTATTTTTTGGGATTGTTCTACTTGGTCCATTTTTTTGAATTATAGCCTAAGTCGGTTCTACACCAGTTGGGTCTCTTTTTTGTAACCCAATGGAGTGAGTGGATATCCCATCTCCTCGTATTTTGTATTCTGTACTTTGTTAATGGAAATAAATTTTGTTTATTAACCCCAAAAAAGTTCAAGTACTGATTCAATTGCTCTTTTTTTTTTTTTTTGGATACGAGATTCAAGTGCTCTATTTAAGTCCGTTTCTTTATTTGATGGTCTGTTGATTGGTATACGATTTTCACTCTATTTTGGCACAGATGATAAAGTAGCAGTTATAGAATCGGAGAGGCTGGCTTGGGAAAACTCGCCTGAGGCTCAGGCAATTAGAGAAGCCCTAAATCCTTGGAGGAACAGCGATGCTGCTGCCGAGGCTGGGAAAGAAAACTAA

mRNA sequence

ATGATATCAGGCCTCGATTCGTATTGGGCTAATGGGCCAGATTATTTGGGCCTGTTAAAAAACGCCGACGTCGAAGCTAAGTTCCGCAGCTTGAGCTTCGTAATTGAAATGAAGTTTCTAGACTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGGTTCCATGGAATTGTTCATGATTAAATCGGGCTTCTATGATAAAGTAGCAGTTATAGAATCGGAGAGGCTGGCTTGGGAAAACTCGCCTGAGGCTCAGGCAATTAGAGAAGCCCTAAATCCTTGGAGGAACAGCGATGCTGCTGCCGAGGCTGGGAAAGAAAACTAA

Coding sequence (CDS)

ATGATATCAGGCCTCGATTCGTATTGGGCTAATGGGCCAGATTATTTGGGCCTGTTAAAAAACGCCGACGTCGAAGCTAAGTTCCGCAGCTTGAGCTTCGTAATTGAAATGAAGTTTCTAGACTGGTATGTGAAGATTGGGACAGTTTCGGCTTTGATTGGAGGTTCCATGGAATTGTTCATGATTAAATCGGGCTTCTATGATAAAGTAGCAGTTATAGAATCGGAGAGGCTGGCTTGGGAAAACTCGCCTGAGGCTCAGGCAATTAGAGAAGCCCTAAATCCTTGGAGGAACAGCGATGCTGCTGCCGAGGCTGGGAAAGAAAACTAA

Protein sequence

MISGLDSYWANGPDYLGLLKNADVEAKFRSLSFVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPWRNSDAAAEAGKEN*

Homology

[Close]

BLAST of CSPI06G05330 vs. ExPASy TrEMBL
Match: A0A5A7SQJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001150 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.0e-35
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 23  DVEAKFRSLSFVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWEN 82
           DVEAKF SLSFVIEMKFL WYVKIGTVSALIG SMELFMIK+GFYDKV VIESERLAWEN
Sbjct: 76  DVEAKFHSLSFVIEMKFLGWYVKIGTVSALIGASMELFMIKTGFYDKVTVIESERLAWEN 135

Query: 83  SPEAQAIREALNPWRNSDAAAEAGKEN 110
           SPEAQAIREALNPWRN DAAAEA ++N
Sbjct: 136 SPEAQAIREALNPWRNGDAAAEARQDN 162

[Close]

BLAST of CSPI06G05330 vs. ExPASy TrEMBL
Match: A0A0A0K8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067430 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.4e-32
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 37  MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 96
           MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW
Sbjct: 1   MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 60

Query: 97  RNSDAAAEAGKEN 110
           RNSDAA EAGKEN
Sbjct: 61  RNSDAATEAGKEN 73

[Close]

BLAST of CSPI06G05330 vs. ExPASy TrEMBL
Match: A0A6J1CA87 (uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009736 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 12  GPDYLGLLKNADVEAKFRSLSFVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVA 71
           GP+Y G L      A        ++MKFLDWYVKIG VSALIG SME+FMIK+GFYDKV 
Sbjct: 63  GPEYAGPLGVLQALAD-------VQMKFLDWYVKIGAVSALIGASMEMFMIKTGFYDKVT 122

Query: 72  VIESERLAWENSPEAQAIREALNPWRNSDAAAEAGKE 109
           V+ESE+LAWENSPEAQA+REALNPWRN DA AEA K+
Sbjct: 123 VLESEKLAWENSPEAQAVREALNPWRNRDAVAEAKKD 152

[Close]

BLAST of CSPI06G05330 vs. ExPASy TrEMBL
Match: A0A6J1KWK7 (uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 33  FVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREA 92
           F +EMKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREA
Sbjct: 7   FSVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREA 66

Query: 93  LNPWRNSDAAAEAGKE 109
           LNPWRN DAA EA K+
Sbjct: 67  LNPWRNHDAAEEARKD 82

[Close]

BLAST of CSPI06G05330 vs. ExPASy TrEMBL
Match: A0A6J1H837 (uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC111460420 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 37  MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 96
           MKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREALNPW
Sbjct: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREALNPW 60

Query: 97  RNSDAAAEAGKE 109
           RN DAA EA K+
Sbjct: 61  RNHDAAEEARKD 72

[Close]

BLAST of CSPI06G05330 vs. NCBI nr
Match: KAA0033454.1 (hypothetical protein E6C27_scaffold111G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 23  DVEAKFRSLSFVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWEN 82
           DVEAKF SLSFVIEMKFL WYVKIGTVSALIG SMELFMIK+GFYDKV VIESERLAWEN
Sbjct: 76  DVEAKFHSLSFVIEMKFLGWYVKIGTVSALIGASMELFMIKTGFYDKVTVIESERLAWEN 135

Query: 83  SPEAQAIREALNPWRNSDAAAEAGKEN 110
           SPEAQAIREALNPWRN DAAAEA ++N
Sbjct: 136 SPEAQAIREALNPWRNGDAAAEARQDN 162

[Close]

BLAST of CSPI06G05330 vs. NCBI nr
Match: XP_022138621.1 (uncharacterized protein LOC111009736 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 12  GPDYLGLLKNADVEAKFRSLSFVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVA 71
           GP+Y G L      A        ++MKFLDWYVKIG VSALIG SME+FMIK+GFYDKV 
Sbjct: 63  GPEYAGPLGVLQALAD-------VQMKFLDWYVKIGAVSALIGASMEMFMIKTGFYDKVT 122

Query: 72  VIESERLAWENSPEAQAIREALNPWRNSDAAAEAGKE 109
           V+ESE+LAWENSPEAQA+REALNPWRN DA AEA K+
Sbjct: 123 VLESEKLAWENSPEAQAVREALNPWRNRDAVAEAKKD 152

[Close]

BLAST of CSPI06G05330 vs. NCBI nr
Match: XP_023548311.1 (uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 34  VIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREAL 93
           V+EMKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREAL
Sbjct: 3   VVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREAL 62

Query: 94  NPWRNSDAAAEAGKE 109
           NPWRN DAA EA K+
Sbjct: 63  NPWRNHDAAEEARKD 77

[Close]

BLAST of CSPI06G05330 vs. NCBI nr
Match: XP_023006006.1 (uncharacterized protein LOC111498883 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 33  FVIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREA 92
           F +EMKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE++AWENSPEAQAIREA
Sbjct: 7   FSVEMKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKIAWENSPEAQAIREA 66

Query: 93  LNPWRNSDAAAEAGKE 109
           LNPWRN DAA EA K+
Sbjct: 67  LNPWRNHDAAEEARKD 82

[Close]

BLAST of CSPI06G05330 vs. NCBI nr
Match: XP_038906919.1 (uncharacterized protein LOC120092786 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 37  MKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREALNPW 96
           MKFL WYVKIGTVSALIG SME+FMIK+GFYDKV V+ESE+LAWENSPEAQAIREALNPW
Sbjct: 1   MKFLGWYVKIGTVSALIGASMEMFMIKTGFYDKVTVLESEKLAWENSPEAQAIREALNPW 60

Query: 97  RNSDAAAEAGKE 109
           RN DAAAEA K+
Sbjct: 61  RNIDAAAEARKD 72

[Close]

BLAST of CSPI06G05330 vs. TAIR 10
Match: AT3G62450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-23
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 34  VIEMKFLDWYVKIGTVSALIGGSMELFMIKSGFYDKVAVIESERLAWENSPEAQAIREAL 93
           +++ +FLDWY+KI   SA+IGG ME FMIK+GFYDKV VIE+ER A ENSPEAQAIREAL
Sbjct: 1   MMKTRFLDWYLKIAIGSAIIGGGMEFFMIKTGFYDKVTVIEAERRALENSPEAQAIREAL 60

Query: 94  NPWRNSDA 102
           NPWRN DA
Sbjct: 61  NPWRNKDA 68

The following BLAST results are available for this feature:

BLAST of CSPI06G05330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G05330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQJ1	7.0e-35	89.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K8V0	9.4e-32	98.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067430 PE=4 SV=1	[more]
A0A6J1CA87	1.4e-27	68.04	uncharacterized protein LOC111009736 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1KWK7	5.4e-27	81.58	uncharacterized protein LOC111498883 OS=Cucurbita maxima OX=3661 GN=LOC111498883...	[more]
A0A6J1H837	1.0e-25	83.33	uncharacterized protein LOC111460420 OS=Cucurbita moschata OX=3662 GN=LOC1114604...	[more]

BLAST of CSPI06G05330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033454.1	1.4e-34	89.66	hypothetical protein E6C27_scaffold111G001150 [Cucumis melo var. makuwa]	[more]
XP_022138621.1	2.9e-27	68.04	uncharacterized protein LOC111009736 [Momordica charantia]	[more]
XP_023548311.1	8.5e-27	82.67	uncharacterized protein LOC111806987 [Cucurbita pepo subsp. pepo]	[more]
XP_023006006.1	1.1e-26	81.58	uncharacterized protein LOC111498883 [Cucurbita maxima]	[more]
XP_038906919.1	4.2e-26	86.11	uncharacterized protein LOC120092786 [Benincasa hispida]	[more]

BLAST of CSPI06G05330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62450.1	2.1e-23	73.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36377:SF1	DNA MISMATCH REPAIR PROTEIN	coord: 37..104
None	No IPR available	PANTHER	PTHR36377	DNA MISMATCH REPAIR PROTEIN	coord: 37..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05330.1	CSPI06G05330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane