CSPI06G05320 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G05320
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 4840837 .. 4841453 (-)
RNA-Seq Expression	CSPI06G05320
Synteny	CSPI06G05320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATCAATATCCCACCATATATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGATGAGTAATCTTTGCTTCTTCTGTCCTAAACCCTAAATCTGATTTTTAGTTACAAAACCATGTTCTATTCTATTTGGATCCATTCATATTTGAATTTCTAAATTTGTTTGTTTTTTTCTCTAATGAGTTGCTACAAGTTTGGAAGGGAAAAATTTAGAACTTACAACGGTCTCTCAATGCATATACGTCAATTCCGTTCA

mRNA sequence

AATAATCAATATCCCACCATATATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGATGAGTAATCTTTGCTTCTTCTGTCCTAAACCCTAAATCTGATTTTTAGTTACAAAACCATGTTCTATTCTATTTGGATCCATTCATATTTGAATTTCTAAATTTGTTTGTTTTTTTCTCTAATGAGTTGCTACAAGTTTGGAAGGGAAAAATTTAGAACTTACAACGGTCTCTCAATGCATATACGTCAATTCCGTTCA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCGTTTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTACTGTCTCATCCTCCGCATGAATTAGAGTCTGCTGTGGATGATGCTGATGATCAGGAAGATGCTTGCTCCTGCAGTTGCAATAACAATGATTTTTCTATCGATGATTTTCAAGATGCATATGACGGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCCGTGACGGCGGAAGGCGGCGGAGCGGGGCTGGTTACGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGAGTCGAGTAATAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGGTCTTTTGGGACACTTGCATGGCTGGAGGGTACCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEMEDKVFWDTCMAGGYP*

Homology

[Close]

BLAST of CSPI06G05320 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.6e-63
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDF 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPPH+LESAVDDADDQEDACSCSCNNNDFSIDDF
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDF 60

Query: 61  QDAYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEMEDKV 120
           QDAYDGDNGDGDQDIGLI DGGRRRSGAGY EEEEEEEEEESSNNDVG IRNMNEMEDKV
Sbjct: 61  QDAYDGDNGDGDQDIGLIGDGGRRRSGAGY-EEEEEEEEEESSNNDVGAIRNMNEMEDKV 120

Query: 121 FWDTCMAGGYP 132
           FWDTCMAGGYP
Sbjct: 121 FWDTCMAGGYP 130

[Close]

BLAST of CSPI06G05320 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47
Identity = 117/140 (83.57%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSID-- 60
           MDQIKDASSFFLWEDSADSEVDKLLSH PHELESAVDD DDQEDACSCSCNNNDFSID  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSH-PHELESAVDD-DDQEDACSCSCNNNDFSIDDL 60

Query: 61  ---DFQDAYDGDNGDG--DQDIGLIRDGGRRRSGAG--YEEEEEEEEEEESSNNDVGVIR 120
              DFQD  DGDNGD   DQDI LI DGGRRRSGA   Y  EEEEEEEEE S++DVGVIR
Sbjct: 61  RALDFQD--DGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIR 120

Query: 121 NMNEMEDKVFWDTCMAGGYP 132
           NMNEMEDK+FWDTCMAGGYP
Sbjct: 121 NMNEMEDKLFWDTCMAGGYP 136

[Close]

BLAST of CSPI06G05320 vs. ExPASy TrEMBL
Match: A0A5E4EN68 (PREDICTED: LOC110601647 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000347 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 53/130 (40.77%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWEDSADSE D        +  S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEDSADSEADHHTGPLNADNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEM-EDKVF 125
           +Y  +  +  Q     + G +  +G+GYEE+EEEE E   S     V ++M+EM ED++F
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVE---SKMVCHVNKSMDEMEEDRLF 128

Query: 126 WDTCMAGGYP 132
           W+TCMA GYP
Sbjct: 129 WETCMAVGYP 135

[Close]

BLAST of CSPI06G05320 vs. ExPASy TrEMBL
Match: A0A251QXF0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G143800 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWE SADSE D           S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEGSADSEADHHTGPLNANNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEM-EDKVF 125
           +Y  +  +  Q     + G +  +G+GYEE+EEEE E   S     V ++M+EM ED++F
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVE---SKMVCHVNKSMDEMEEDRLF 128

Query: 126 WDTCMAGGYP 132
           W+TCMA GYP
Sbjct: 129 WETCMAVGYP 135

[Close]

BLAST of CSPI06G05320 vs. ExPASy TrEMBL
Match: A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.2e-06
Identity = 51/135 (37.78%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDFQDAYD 65
           D SSF L E+SADSEVD L       L  AV    D++DA SCSC+  +   +     +D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMC--LRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHD 67

Query: 66  GDNGDGDQD-IGLIRDGGRRRSGAGYEE---EEEEEEEEESSNNDVGVIRNM-----NEM 125
             N + + D  G   D  R+ +  G  +    +  ++EEE S+ D+G+  N+     +EM
Sbjct: 68  HKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKDEM 127

Query: 126 EDKVFWDTCMAGGYP 132
           ED++FW+TCMA GYP
Sbjct: 128 EDRLFWETCMAFGYP 140

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 16  SADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDI 75
           SADSEVDKLLSHPPH+LESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDI
Sbjct: 31  SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDGDNGDGDQDI 90

Query: 76  GLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEMEDKVFWDTCMAGGYP 132
           GLI DGGRRRSGAGY EEEEEEEEEESSNNDVG IRNMNEMEDKVFWDTCMAGGYP
Sbjct: 91  GLIGDGGRRRSGAGY-EEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMAGGYP 145

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 4.0e-47
Identity = 117/140 (83.57%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNNNDFSID-- 60
           MDQIKDASSFFLWEDSADSEVDKLLSH PHELESAVDD DDQEDACSCSCNNNDFSID  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSH-PHELESAVDD-DDQEDACSCSCNNNDFSIDDL 60

Query: 61  ---DFQDAYDGDNGDG--DQDIGLIRDGGRRRSGAG--YEEEEEEEEEEESSNNDVGVIR 120
              DFQD  DGDNGD   DQDI LI DGGRRRSGA   Y  EEEEEEEEE S++DVGVIR
Sbjct: 61  RALDFQD--DGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIR 120

Query: 121 NMNEMEDKVFWDTCMAGGYP 132
           NMNEMEDK+FWDTCMAGGYP
Sbjct: 121 NMNEMEDKLFWDTCMAGGYP 136

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 84/138 (60.87%), Postives = 97/138 (70.29%), Query Frame = 0


Query: 4   IKDASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCSCNN--NDFSIDDFQ 63
           + +ASS FLWED+ADSEVD+LLSH PH+LESAV   DD EDA SCSC++   D S  D Q
Sbjct: 1   MNNASSLFLWEDTADSEVDRLLSH-PHQLESAV---DDPEDARSCSCDDYATDRSAVDLQ 60

Query: 64  DAYDGDNGDGDQDIGLIRDGGR-------RRSGAGYE-EEEEEEEEEESSNNDVGVIRNM 123
           D  DGD GD D+ +G   D  R       R SGA  E   EE+EEEEE SNN+VG IR+M
Sbjct: 61  D--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDM 120

Query: 124 NEMEDKVFWDTCMAGGYP 132
           NEMEDK+FWDTCM GGYP
Sbjct: 121 NEMEDKLFWDTCMEGGYP 131

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: XP_034198362.1 (uncharacterized protein LOC117613862 [Prunus dulcis] >VVA16872.1 PREDICTED: LOC110601647 [Prunus dulcis])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-07
Identity = 53/130 (40.77%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWEDSADSE D        +  S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEDSADSEADHHTGPLNADNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEM-EDKVF 125
           +Y  +  +  Q     + G +  +G+GYEE+EEEE E   S     V ++M+EM ED++F
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVE---SKMVCHVNKSMDEMEEDRLF 128

Query: 126 WDTCMAGGYP 132
           W+TCMA GYP
Sbjct: 129 WETCMAVGYP 135

[Close]

BLAST of CSPI06G05320 vs. NCBI nr
Match: XP_020425650.1 (uncharacterized protein LOC18790634 [Prunus persica] >ONI28494.1 hypothetical protein PRUPE_1G143800 [Prunus persica])

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-06
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPPHELESAVDDADDQEDACSCS---CNNNDFSIDDFQD 65
           D S FFLWE SADSE D           S ++ A + EDA SCS    +++ F   +  D
Sbjct: 9   DVSCFFLWEGSADSEADHHTGPLNANNSSKIEIALEAEDAESCSSGTLSDHAFGACEALD 68

Query: 66  AYDGDNGDGDQDIGLIRDGGRRRSGAGYEEEEEEEEEEESSNNDVGVIRNMNEM-EDKVF 125
           +Y  +  +  Q     + G +  +G+GYEE+EEEE E   S     V ++M+EM ED++F
Sbjct: 69  SYCKNAEERQQSRCSSKVGLQSDAGSGYEEDEEEEVE---SKMVCHVNKSMDEMEEDRLF 128

Query: 126 WDTCMAGGYP 132
           W+TCMA GYP
Sbjct: 129 WETCMAVGYP 135

The following BLAST results are available for this feature:

BLAST of CSPI06G05320 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G05320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF3	5.6e-63	96.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1	[more]
A0A5A7SSL9	1.9e-47	83.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5E4EN68	2.5e-07	40.77	PREDICTED: LOC110601647 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000347 PE=4 SV=1	[more]
A0A251QXF0	2.8e-06	40.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G143800 PE=4 SV=1	[more]
A0A2H5N748	8.2e-06	37.78	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1	[more]

BLAST of CSPI06G05320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646684.1	1.7e-53	96.55	hypothetical protein Csa_005604 [Cucumis sativus]	[more]
KAA0033453.1	4.0e-47	83.57	hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa]	[more]
KAG6575041.1	2.5e-25	60.87	hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_034198362.1	5.2e-07	40.77	uncharacterized protein LOC117613862 [Prunus dulcis] >VVA16872.1 PREDICTED: LOC1...	[more]
XP_020425650.1	5.8e-06	40.00	uncharacterized protein LOC18790634 [Prunus persica] >ONI28494.1 hypothetical pr...	[more]

BLAST of CSPI06G05320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..43
None	No IPR available	PANTHER	PTHR35726:SF5	SUBFAMILY NOT NAMED	coord: 2..131
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G05320.1	CSPI06G05320.1	mRNA