CSPI06G03960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G03960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ferredoxin
Location	Chr6: 3699972 .. 3702403 (+)
RNA-Seq Expression	CSPI06G03960
Synteny	CSPI06G03960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAGAGAGAAGGAAAGAAAGAATTTAGTTAAAATAGAAAGGGTGATAGAGAACCATACCCTTGGGTCTCACCAACTCAGTCGTCTTCGTTTGGAGTTTGTTCTTAAGAAAGGAAAGAAAAGGATAGACAGTGACAAACAAACACGTACTTCTCTTTTGTTCTCTTCCCTTCTTTTCTCTCTTCTTCCAGCGCCGTTTAGGGCTTCCACTTTCCATCTCCATTTCCTTCAGATCCCTCTCTCCCTCTCTCTCCCTTCGTAAGATCACTTCTCTCTCCTTTTCATTCCTTCTTTCTCTAAGTTTTCGCTCTTTTTTTTTTTTCTTCTTACGCTTTATGTTCTCTTTCTTTGCTTCTTTACTGGATCAACCTTTCTTGCGTATTTAATGCTCTTGATTTTTCTTTTATATTTCACCTATTGATTTCTCTTGATTTGTTTTCTCTTTCTTTCCTTTCGTTTATTCCACCTATTGTCTTGGAAGCTCCGCTGATGATGAATGAATGAACGCTTCACACTAGTGATTCTTTTTTTTTTTTTTTCCTTTTCGTTTTTTCAATTTTTGAATTGTTCGAGGTTTTGGTTGTTGTTGCTCTGATGATATGATATGATATGATATGATATTCACGAGGTCTGATGCTTCTGTTGTCATTTTATCGCCTTGCATGCTTGTTGAGTCTTCTTTCCATTCCATATGAACTATTGGTGGTGATTTTGTTTAAGTTGTTCTGTTTTCTTTGCGGGACGACGGTGTGAAAAATGTTTAGGAATTAGGATCTGGTCCGTTTTTTATTTTTATTTCTTTACTGTTACTTCCTTTTGTGCTGCTCAGATTGTTTGTTGTGGATTGAACAATCGATAAACTAGTGTATTCTTTTCATTTGCTCAATAAAAGAAACATTTATCCGTTATTTCAAAAACTTTGAGGTATCCTTTTTTCTGTTTCCTTTCAACTTTTGTGGTATCGAACTATTGTAGGTTTGATTTACTAACCTCGAACGTATTTTTGCATTACTGGTTCATCGGTGCGACCAACATAACATGTCTTTCTTATTGTGATGAACTAACTTAGTTTTAATGAAATAGTTTTTTCCGTTAAGAATGAAATGTTATTGAAACTTTCCATATCTTATTCATCATCTGGAAGACTGGAACTATCTCATATCCTCCAATTGTCTTTTTTCATCAATTGCTGGTGTGAGCGTAGCTGATGAATGTGCAATATTTTGACGCTATGATATGAAATATCATGAATGATATTTAGTAGACAAGATCTTTTATCATCGATTTCTGCTTGAATGTTTTCATTTTGGAATTTTAACTTGTACGTATGGTTTCCAACTTTGCAGTGACAAGTAGATAAGGTTGCCGTGTAATTGTGTGATTAATTAACTTTGATCTTCTGTTGTCTAATAGATTTTTGCAAATTTCTGTCAAATTCTCTATTCTTAGTCCCTTCGAGGACATTCGATGAGTCTCTATTTTTATTTTCAGGTATTACTATTCTATTCAGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAATTTGTTTGCTTGTGTGTATTTTGTCAGTTGAATCTGATGATTGAACTTCCATCATGCTAAACTTTCCAAGACTAGGCTTAGTTTTTGAGGTTGAATGTCTATTTTGCAAGAATTATGCTCAGTAGAACTGCGAAATTTAAGTTGCTGGTTTAGCGGAAGTCGAAGTATCGAACATCATTCATGAATAATGGGTATATCTGTTTTAGTTTATGGTTAAGGGCCAAGAGAAGGTGTGAAAGTTCAATGCCGACAAATGGACATTAAGTTCCCAGCTCGGCTTCAAGTAAGTAACTATGCATATGCATATGATGGAGTGTCTCATCTTCATTCTTTACTTGGCATAAAAATGAATTTCGTAGGTTATTAAAATGGATGAATATAAATTAGTAAATAATCTGATTGACCTGCCAAAGAAAAGAAAAAAACGTTTTGACGATTTGGAAATAAAAATAGATTTGTGTAGGGTGG

mRNA sequence

AAGAGAGAGAGAAGGAAAGAAAGAATTTAGTTAAAATAGAAAGGGTGATAGAGAACCATACCCTTGGGTCTCACCAACTCAGTCGTCTTCGTTTGGAGTTTGTTCTTAAGAAAGGAAAGAAAAGGATAGACAGTGACAAACAAACACGTACTTCTCTTTTGTTCTCTTCCCTTCTTTTCTCTCTTCTTCCAGCGCCGTTTAGGGCTTCCACTTTCCATCTCCATTTCCTTCAGATCCCTCTCTCCCTCTCTCTCCCTTCGTATTACTATTCTATTCAGAACATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAATTTGTTTGCTTGTGTGTATTTTGTCAGTTGAATCTGATGATTGAACTTCCATCATGCTAAACTTTCCAAGACTAGGCTTAGTTTTTGAGGTTGAATGTCTATTTTGCAAGAATTATGCTCAGTAGAACTGCGAAATTTAAGTTGCTGGTTTAGCGGAAGTCGAAGTATCGAACATCATTCATGAATAATGGGTATATCTGTTTTAGTTTATGGTTAAGGGCCAAGAGAAGGTGTGAAAGTTCAATGCCGACAAATGGACATTAAGTTCCCAGCTCGGCTTCAAGTAAGTAACTATGCATATGCATATGATGGAGTGTCTCATCTTCATTCTTTACTTGGCATAAAAATGAATTTCGTAGGTTATTAAAATGGATGAATATAAATTAGTAAATAATCTGATTGACCTGCCAAAGAAAAGAAAAAAACGTTTTGACGATTTGGAAATAAAAATAGATTTGTGTAGGGTGG

Coding sequence (CDS)

ATGTCGACTGTCACACTCCCAACATCTTCCCTGATCAAACCTCCTACACTAAGGAGATCCAATGCCCTGGTGCAGAGGCCATCTTCTTTGTGTTCCTTTAGGAGCGTATCCCGATCATTTGGGTTGAAGTCTTCTCAGTTCAAAGTGTCAGCGATGGCTTCTTACAAAGTAAAATTAATTGGACCAGACGGTGAAGAGAATGAGTTTGACGCCCCTGATGATGCTTACATTCTCGACTCAGCTGAGAATGCTGGATTGGACCTACCGTACTCTTGCAGGGCCGGGGCTTGCTCTACTTGTGCCGGTCAAGTAGTGTCCGGGACAGTGGACCAGACAGATGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTGACCTGCGTCGCATATCCACAATCCGATTGCGTGATCCACACACACAAGGAAGGTGATTTGTATTAA

Protein sequence

MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKEGDLY*

Homology

[Close]

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 1   MSTVTLPTSSLI--KPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSS-QFKVSAMASYKV 60
           MST T  TS  +     T + S   V+ PSSL  F  V++   LK+S +  VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  KLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 120
           KL+GP+GEE+EFDAPDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 121 DDKQMEKG 126
           DD Q E+G
Sbjct: 121 DDGQQEEG 128

[Close]

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-30
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKG 126
           SFL+D  +EKG
Sbjct: 121 SFLEDSHLEKG 131

[Close]

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGPDG+ENEFD PDD YILD+AE AG+DLPYSCRAGACSTCAG++  G VDQ+
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 113 DGSFLDDKQMEKG 126
           DGSFL+D   EKG
Sbjct: 62  DGSFLEDHHFEKG 74

[Close]

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-26
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 53  ASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQT 112
           A YKVKLIGP+GEENEF+  DD +ILD+AE AG+DLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 113 DGSFLDDKQMEKG 126
           +GSFL+D   EKG
Sbjct: 62  EGSFLEDDHFEKG 74

[Close]

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-26
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 40  FGLKSSQ-FKVSAMASYKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACS 99
           FGLKS+   KV+ MASYKVKLI PDG   EFD PD+ YILD AE AG DLPYSCRAG+CS
Sbjct: 34  FGLKSANGGKVTCMASYKVKLITPDG-PIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCS 93

Query: 100 TCAGQVVSGTVDQTDGSFLDDKQMEKG 126
           +CAG++  G VDQTDG+FLDD Q+E+G
Sbjct: 94  SCAGKIAGGAVDQTDGNFLDDDQLEEG 119

[Close]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL
Match: A0A0A0KNA3 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL
Match: A0A5D3CIL4 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.3e-56
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QME+G
Sbjct: 121 QMEQG 125

[Close]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL
Match: A0A1S3C4A6 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.3e-56
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QME+G
Sbjct: 121 QMEQG 125

[Close]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFR+VSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDD+
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: XP_011656571.1 (ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005181 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: XP_008456600.1 (PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, root R-B2-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.3e-55
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LIK PTLRRSNALVQRPSSLCSFRSVS+SFGLKSSQ KVSAMASYKVKLI
Sbjct: 1   MSTVILPTSCLIKTPTLRRSNALVQRPSSLCSFRSVSQSFGLKSSQSKVSAMASYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 121 QMEKG 126
           QME+G
Sbjct: 121 QMEQG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: XP_038884210.1 (ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884212.1 ferredoxin, root R-B2-like [Benincasa hispida])

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-51
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           M T+ LPTS LIK  T RRSNALVQRPSSLCS RSVSR+FGLKSS F+VSAMA+YKVKLI
Sbjct: 1   MLTIKLPTSCLIKTTTPRRSNALVQRPSSLCSVRSVSRAFGLKSSSFRVSAMATYKVKLI 60

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDDK
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDK 120

Query: 121 QMEKG 126
           QMEKG
Sbjct: 121 QMEKG 125

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: KAG7032935.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 10  MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 70  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129

Query: 121 QMEKG 126
           QMEKG
Sbjct: 130 QMEKG 134

[Close]

BLAST of CSPI06G03960 vs. NCBI nr
Match: KAG6602256.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 109/125 (87.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60
           MSTV LPTS LI+  T R+S ALVQRPSSL SFRSVSR+FGLKSS FKVSAMASYKVKLI
Sbjct: 382 MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 441

Query: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
           GP+GEENEF+APDD YILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 442 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 501

Query: 121 QMEKG 126
           QMEKG
Sbjct: 502 QMEKG 506

[Close]

BLAST of CSPI06G03960 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-31
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 1   MSTVTLPTSSLIKPP-TLRRSNALVQRPS---SLCSFRSVSRSFGLKSSQFKVSAMAS-- 60
           M+TV + ++S+ K     + +N L+   S   S+ S + VSRSFGLK S     A  S  
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 61  YKVKLIGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
           YKVKL+GPDG+E+EF+  DD YILD+AE AG+DLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 121 SFLDDKQMEKG 126
           SFL+D  +EKG
Sbjct: 121 SFLEDSHLEKG 131

[Close]

BLAST of CSPI06G03960 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-26
Identity = 68/126 (53.97%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCS--FRSVSRSFGLKSSQF---KVSAMASYKVKL 64
           T  +S+++    LRR     Q P SL S  F +    FGLKSS     +V+AMA+YKVK 
Sbjct: 4   TALSSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+GE+ E +  +D Y+LD+AE AGLDLPYSCRAG+CS+CAG+VVSG++DQ+D SFLDD
Sbjct: 64  ITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD 123

Query: 125 KQMEKG 126
           +QM +G
Sbjct: 124 EQMSEG 124

[Close]

BLAST of CSPI06G03960 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-25
Identity = 67/126 (53.17%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 5   TLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRS--FGLKSSQF---KVSAMASYKVKL 64
           T  +S+++    +RRS A    P SL S  S +    FGLKS      +V+AMA+YKVK 
Sbjct: 4   TALSSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKF 63

Query: 65  IGPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 124
           I P+G E E +  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG+VVSG+VDQ+D SFLDD
Sbjct: 64  ITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDD 123

Query: 125 KQMEKG 126
           +Q+ +G
Sbjct: 124 EQIGEG 124

[Close]

BLAST of CSPI06G03960 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 6   LPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQ---FKVSAMASYKVKLIGP 65
           L +S +IK P + R   +    + L +  + +  FGL SS+    KV A  S KVKLI P
Sbjct: 5   LYSSYIIKIPVISR---ISPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISP 64

Query: 66  DGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQM 125
           +GEE E +  +D  IL+SAENAGL+LPYSCR+G C TC G++VSG VDQ+ GSFL+++Q+
Sbjct: 65  EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 124

[Close]

BLAST of CSPI06G03960 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 2   STVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLIG 61
           ST++LP   L    +    NA +   ++  +F +  R               +YKV ++ 
Sbjct: 11  STISLPKPYLSNSFSFPLRNATLSTTTNRRNFLTTGRIIA-----------RAYKV-VVE 70

Query: 62  PDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQ 121
            DG+  E +   D  IL  A ++GLD+PY C  G C TC  ++V+GTVDQ+ G  L D  
Sbjct: 71  HDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDV 121

Query: 122 MEKG 126
           +E+G
Sbjct: 131 VERG 121

The following BLAST results are available for this feature:

BLAST of CSPI06G03960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	1.1e-33	61.72	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	2.6e-30	57.25	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14936	2.0e-27	76.71	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14937	3.8e-26	73.97	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
Q9ZTS2	3.8e-26	68.97	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]

BLAST of CSPI06G03960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNA3	5.0e-61	100.00	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_5G413260 PE=3 SV=1	[more]
A0A5D3CIL4	6.3e-56	93.60	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00840 PE=...	[more]
A0A1S3C4A6	6.3e-56	93.60	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496509 PE=3 SV=1	[more]
A0A6J1E8R7	1.4e-50	87.20	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1JQ79	2.0e-49	85.60	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]

BLAST of CSPI06G03960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656571.1	1.0e-60	100.00	ferredoxin, root R-B1 [Cucumis sativus] >KGN46037.1 hypothetical protein Csa_005...	[more]
XP_008456600.1	1.3e-55	93.60	PREDICTED: ferredoxin, root R-B2-like [Cucumis melo] >TYK11763.1 ferredoxin, roo...	[more]
XP_038884210.1	1.9e-51	87.20	ferredoxin, root R-B2-like [Benincasa hispida] >XP_038884211.1 ferredoxin, root ...	[more]
KAG7032935.1	2.8e-50	87.20	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6602256.1	2.8e-50	87.20	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CSPI06G03960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	1.8e-31	57.25	ferredoxin 3	[more]
AT1G10960.1	1.0e-26	53.97	ferredoxin 1	[more]
AT1G60950.1	4.3e-25	53.17	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	2.0e-22	48.78	ferredoxin 4	[more]
AT4G14890.1	4.4e-09	32.26	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..135 e-value: 4.9E-20 score: 71.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 55..146 score: 12.996633
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 57..141 e-value: 1.13126E-32 score: 109.022
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 53..149 e-value: 4.3E-50 score: 165.5
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 52..149 e-value: 3.2E-36 score: 125.1
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 1..149
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..149
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 92..100
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 38..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G03960.2	CSPI06G03960.2	mRNA
CSPI06G03960.1	CSPI06G03960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding