CSPI06G03920 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G03920
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 3670717 .. 3670944 (+)
RNA-Seq Expression	CSPI06G03920
Synteny	CSPI06G03920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCGGGGATACGCGTTCGCGCACGCTCATCGATGCGACGGTGGTTCCATACCCTTTAGGTTTCTGCCAAGGTTTTACGGAAAGAACTTTTCAAGTTTTTCCTTGGCTCAATACCTACAGGGTGGTGAACCTGAGTAGACGGAAGCCCGTGGGGGAAGGGCCTTTTTCGGTCGGGACAGGGACGCAAGGTTATATGAAAAAGCCGCCTAAACTCGGATCCTAA

mRNA sequence

ATGGCGCTCGGGGATACGCGTTCGCGCACGCTCATCGATGCGACGGTGGTTCCATACCCTTTAGGTTTCTGCCAAGGTTTTACGGAAAGAACTTTTCAAGTTTTTCCTTGGCTCAATACCTACAGGGTGGTGAACCTGAGTAGACGGAAGCCCGTGGGGGAAGGGCCTTTTTCGGTCGGGACAGGGACGCAAGGTTATATGAAAAAGCCGCCTAAACTCGGATCCTAA

Coding sequence (CDS)

ATGGCGCTCGGGGATACGCGTTCGCGCACGCTCATCGATGCGACGGTGGTTCCATACCCTTTAGGTTTCTGCCAAGGTTTTACGGAAAGAACTTTTCAAGTTTTTCCTTGGCTCAATACCTACAGGGTGGTGAACCTGAGTAGACGGAAGCCCGTGGGGGAAGGGCCTTTTTCGGTCGGGACAGGGACGCAAGGTTATATGAAAAAGCCGCCTAAACTCGGATCCTAA

Protein sequence

MALGDTRSRTLIDATVVPYPLGFCQGFTERTFQVFPWLNTYRVVNLSRRKPVGEGPFSVGTGTQGYMKKPPKLGS*

Homology

[Close]

BLAST of CSPI06G03920 vs. ExPASy TrEMBL
Match: A0A0A0K9D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G045120 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MALGDTRSRTLIDATVVPYPLGFCQGFTERTFQVF 36
          MA GDT SR LIDATV PY LGFCQGFT+RTFQVF
Sbjct: 1  MAFGDTPSRMLIDATVAPYALGFCQGFTKRTFQVF 35

[Close]

BLAST of CSPI06G03920 vs. NCBI nr
Match: KAE8646632.1 (hypothetical protein Csa_005372 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MALGDTRSRTLIDATVVPYPLGFCQGFTERTFQVF 36
          MA GDT SR LIDATV PY LGFCQGFT+RTFQVF
Sbjct: 1  MAFGDTPSRMLIDATVAPYALGFCQGFTKRTFQVF 35

The following BLAST results are available for this feature:

BLAST of CSPI06G03920 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G03920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9D2	2.5e-07	82.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G045120 PE=4 SV=1	[more]

BLAST of CSPI06G03920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646632.1	5.2e-07	82.86	hypothetical protein Csa_005372 [Cucumis sativus]	[more]

BLAST of CSPI06G03920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G03920.1	CSPI06G03920.1	mRNA