CSPI06G03810 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G03810
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RRM domain-containing protein
Location	Chr6: 3580124 .. 3583480 (+)
RNA-Seq Expression	CSPI06G03810
Synteny	CSPI06G03810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATGGCGAAGATTAAGTCTCAGGCTAAAACGCAGCGTTTTAACCCGTCTTCGACCTACGTACTACGTAGCCTCCATTCTCTTGAGCTCTCTCATTCCGCCGCCGCCAACTCCTCTGCTTTCTTCCTTCTTCCTTCTTCTCCTCTTTCAGGTCAGTTCTCTCCAAACCCTAATTCTCAACTTCGATACCCCACCACCTACTTTCAATTTCTGAATTCGTACTAGAAAACCATTACCTTCCCTCTTCGAATTTCCTGAAATATTCCTTTTCCCTAAGTTCTTGATTGTTTGTTTGTTTGTCTGTCTGTTTGTTTTAGTTCAATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGGTATGCTTCAATCTCTTCGACTCTGATTTTTTTTTTATTTGTTTTATGGTTATTCTATCTCTTTAACTCTCTTGGGATTTATGTATTTATTCCTCTCTTGCCTCTGATTTTTTTTTCTTCAGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTGGTCGAATACCCTAAACCCACATCTTACATTCAATGAAATTTGAAGTTCAAGTTTCTTGTTATCTTCTCTGCTATTTCTTAACCCTTATTGTTTTCTACAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGGTAAGGCTGGCTGAATCTGCGAAGCTTTTTTCTTCCAAAAAGAATTTATGTTCGCAGGAGAATGTTGCATTGCAATAAATTACTAGATTTTTCTGATAACCAAAACTGTCACCAGTAGTGGTACTTTCTTTCTAATTATTTGTGTGCATGGTTTGATTTATGATTTTGTTGTTACGTGTAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTGTTATATTTTAGGACTTTTGTATTTGTAAATTTCTGAATGTTAGTTATTCATCTTAATCACTTTAAGTTTGCCCCAAAATTGAATTTCGTGAGCACAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTGTAAGTAATCATTTGCACTCCCGTGCTACATTTTTGCTTTAACTACCCATGTTGGGAGATGGTTGTTGAATATTTCAAAGAATGTTGCTTCTTTTGTCTCATTTAAATGTTGGCATTTTTGCAGATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGTATTAAGCTTGATCTTTATCTTGTAGACCATACAAACCTATATGTCTTCTTACTTTGTTCCATGATAATTTTCAGGAAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAGAATATTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGGGCTGCTGGGATTGATTATGAGTGTCCAGAAATTGTAAGAAGATTTTTATTTTATAGTTTTAAGCAATTCTTTTTCCCGGAAGATAATTAAATTTTAACTGTTTATTTAAAACATGAGAGCTGTTTATTTACCAGTCATTAATATCTGCTAGTTATTGTTTTTCGTTTATTGAAACTATGGTGTAAAAATGAAGGACAGCACGGACCTAGGAATAATCAAAACAAACCCACAAAAAGAGTTCAATTATAAGGGTTCCAACTAATACAAAATAGATCTCATAGAATTGTTATGAAAGGTCTTTGAAACTGAATCCTTGAGGAAAACATGAAATCCAACAAGAGATCATACTTCTCTAGGTCTCTTTACTACAACACTCCAAACACTTGATTATTCTGCTCACCCCATAGATCACATAATCACACACACAGTCAGCCAAAGAAAAAGACCCTTATCACGAAAGGGTGAATGGAGGAGAAACTTCATGATCATATCACTAATATTCCTGTGATGAGCAAGTACGAAACCAAACATTTGTACGAAGTCACTCCAAACAGCTCTTGCAAACTAACAACTCTGAGAATATGTGATCAATGACTTCCTTTTGCCTCATAATTTCTACTTATTATTGGAGTTCTAATATTAATATAGATGGTGGGTTCATTCCTTAGTTTGATTGGTTGATTTCTGTTTTTGGGATCAAACTCAATTTCGATGCCGAATACAACTCTGGTTTTTGATATAATCGTCTAAAAACCAGATATTTTGTTGAGAAAACAGAAGGCCCACAAAAAGGATCCAAACAAAACTGAACTCAACAAAAAGCGTTAAATGCCTCCAACTTAAAAGTATAAGGTTAGGAGGATGATGTGAAAGACCTCAAGTATAGACATCGAAAAAGAGGAGCATTAAATCTATACAGGGAGTATTCCTGAGAGCTCTCAATGGTATCCTCACTACACATTTTCATTATCTCTATATGGTTGGGAACTGTGAGCCACCCCACTTGATGATGAATTCTATGTGAAATATCTTTCCTCTCTTTTTCTTTTTCCTTTTCTTTTTTCTTGTGTTAAATAAAAAACTATTTCTTCGATTGAATGAAATATCTAAAGATGTACCAAATGATGGCCCATTTGAGTATGTGAAATATTATAATGGAAAGTCTTCTATAGGCAATTTCAGGAGGATGAAATTCAGCTAATTCTTTTTTCTTATTGAGTATGCTCTTGAGTTGAAATGCACTGCAAACCTATATTACATCAAGTGCTTGTAAACACCTTTTAAAGAACTCTAACATCATATGATGCTGCCCCCTTTTGAGATCTGTTTGGTGGAAGTCAACTTCTATTTTTTTTGAAATTTGATCCCATTATATGAATTGCACTGCAGTTTTCTAATGTCTCTTGATAACTTGCAGGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAATTCGATGAAGATTAGAATGAGGGTTCGGTTAATAGAAAGCTATTATATTATCACACCAGAGGAAGGAGGAAGCTCTTGCCTCGTTCCAGTTTCTTATGCTGGAGGGGGGGTTACCTTCCCAATGACCTTGAATCTCCTAATTTTGATCTGTGAAATTTTGTGTCAAAACATACTTTTATTATGCTCTTTAGTAATATGTATTCCCCTTTATAAAAATGAAAAAAAGAGAAGTTATATTGAAGCTTTTATGTTTTACAATTCTGATCTTCTCAAAGACAGGAAAACTGAATGGTAAATTTGAAAGTTCCACCATGTCAGAT

mRNA sequence

TGAATGGCGAAGATTAAGTCTCAGGCTAAAACGCAGCGTTTTAACCCGTCTTCGACCTACGTACTACGTAGCCTCCATTCTCTTGAGCTCTCTCATTCCGCCGCCGCCAACTCCTCTGCTTTCTTCCTTCTTCCTTCTTCTCCTCTTTCAGTTCAATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGAAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAGAATATTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGGGCTGCTGGGATTGATTATGAGTGTCCAGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAATTCGATGAAGATTAGAATGAGGGTTCGGTTAATAGAAAGCTATTATATTATCACACCAGAGGAAGGAGGAAGCTCTTGCCTCGTTCCAGTTTCTTATGCTGGAGGGGGGGTTACCTTCCCAATGACCTTGAATCTCCTAATTTTGATCTGTGAAATTTTGTGTCAAAACATACTTTTATTATGCTCTTTAGTAATATGTATTCCCCTTTATAAAAATGAAAAAAAGAGAAGTTATATTGAAGCTTTTATGTTTTACAATTCTGATCTTCTCAAAGACAGGAAAACTGAATGGTAAATTTGAAAGTTCCACCATGTCAGAT

Coding sequence (CDS)

ATGGGGGCTAAGGCGAGGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTCCTCTTTCATCCGACAAGAAGGAATCTGCCGATTTCTTGCCGTTGGAGGGTGGTCCTGGGCGTAAGTTACCGGTACAGAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGGCCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTAAAAAGATTAAGAATTGCACGAAATAAAAAGACGGGGAAGTCGAAGCATTTTGGCTACGTTGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTGATTCCATGCATAACTATTTGTTGTATGAACACATTCTGAAAGTCCATCTAATTGATCCCGAGCATGTTCACCCCAAACTATGGAAAGGTTTTAACTATCGCCATAGGCCCTTAAACTGGTCTGAACTTGAGCGTAAGCATCATAACAAGGAAAGGACATTGGAGGAACACAAGAAGTTGGTGGATAGAATATTGAAGCGGGATCAGGCTAGACAGAAGAGGATAAGGGCTGCTGGGATTGATTATGAGTGTCCAGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAATTCGATGAAGATTAG

Protein sequence

MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED*

Homology

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BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-29
Identity = 67/149 (44.97%), Postives = 100/149 (67.11%), Query Frame = 0


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 111
           VLY+G +P G FE +++ +F QFGKV RLR++R+KKTG SK +G+VEFE  EVAKIVA++
Sbjct: 46  VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105

Query: 112 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 171
           M+NYL+ E I+K H+I PE VH KL+ G     +   +  + R  +NK  T ++ KK+  
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 165

Query: 172 RILKRDQARQKRIRAAGIDYECPEIVGSV 201
           ++L ++   +KR+ A GIDY+ P     +
Sbjct: 166 KLLSKESKLRKRLAAKGIDYDFPGFAAQI 192

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BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 19  LSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVK 78
           LS D K   DF        RK   +K    T  V+YIG IP    E +++ +F QFG V 
Sbjct: 12  LSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVT 71

Query: 79  RLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWK 138
           RLR++R+KKTG SK + YVE+E  EVAKIVAD+M+NYL  E +LK   + PE VHP+L+ 
Sbjct: 72  RLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFI 131

Query: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECP 195
           G N R R      + R  +N +R  EE KK+  R++ ++   +KR+   GIDY+ P
Sbjct: 132 GCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEKGIDYDFP 182

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BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 62/155 (40.00%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 38  RKLPVQKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYV 97
           +K+   K L+    VLY+GR+PHGF+EK+M  +F QFG V RLR++RN+KTG SKH+ ++
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHH 157
           EFES +VA +VA++MHNYLLY  +L+  +I  + VH  ++KG +   + +  + + R  H
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYE 193
            K  + E+  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

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BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-28
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 111
           V+YIG IP   +E ++  +F QFG V RLR++R+KKTG SK + YVEFE  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 171
           M+NYL  E +LK   + PE VHP+L+ G   + R      + R  +NK R+  E KK+  
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRDQARQKRIRAAGIDYECP 195
           R+L ++   +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

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BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.7e-27
Identity = 60/155 (38.71%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 43  QKPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESP 102
           Q+  + T  V+Y+G +P   +E ++  +F QFG V R R++R+KKTG SK +G+VEFES 
Sbjct: 37  QEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESE 96

Query: 103 EVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERT 162
           +VAKI A++M+NYL  E +LK H I PE VH +L++ ++   +  ++  ++R  +N+ R+
Sbjct: 97  DVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKR--YNQNRS 156

Query: 163 LEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 198
           L +  ++ +R  K+++  +KR+   GIDY  P +V
Sbjct: 157 LVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLV 189

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BLAST of CSPI06G03810 vs. ExPASy TrEMBL
Match: A0A0A0KCE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115
Identity = 210/212 (99.06%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKL VQKPLESTATVLYIGRIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]

BLAST of CSPI06G03810 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.6e-112
Identity = 205/212 (96.70%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL KATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.7e-107
Identity = 196/212 (92.45%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107
Identity = 192/212 (90.57%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL+KAT   SDKKESADFLPLEGGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARN+KTGKS+HFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +LKVHLI PEHVHPKLWKGFNYRH+PL+WSELERK HNKERTL+EHKKLV+RILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. ExPASy TrEMBL
Match: A0A6J1JIS9 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111487311 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.3e-105
Identity = 193/212 (91.04%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL+KAT L S++ ESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLISNQTESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKRHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAA IDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAARIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. NCBI nr
Match: XP_004140894.1 (uncharacterized RNA-binding protein C1827.05c [Cucumis sativus] >KAE8646629.1 hypothetical protein Csa_004933 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 3.2e-115
Identity = 210/212 (99.06%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKL VQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. NCBI nr
Match: XP_008456579.1 (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 414.1 bits (1063), Expect = 7.4e-112
Identity = 205/212 (96.70%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL KATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGYVEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EHKKLVDRILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. NCBI nr
Match: XP_038885284.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_038885285.1 MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 197/212 (92.92%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL+KAT LS  K+ESADFLPLEGGPGRKLP QKPLESTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLSCHKQESADFLPLEGGPGRKLPAQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL+EHKKLVDRI+KRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLDEHKKLVDRIMKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPIPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata])

HSP 1 Score: 397.9 bits (1021), Expect = 5.5e-107
Identity = 196/212 (92.45%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. NCBI nr
Match: XP_022993750.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima])

HSP 1 Score: 397.5 bits (1020), Expect = 7.2e-107
Identity = 192/212 (90.57%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60
           MGAKA+KAMKKKL+KAT   SDKKESADFLPLEGGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARN+KTGKS+HFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 180
           +LKVHLI PEHVHPKLWKGFNYRH+PL+WSELERK HNKERTL+EHKKLV+RILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

[Close]

BLAST of CSPI06G03810 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 278.1 bits (710), Expect = 5.9e-75
Identity = 135/221 (61.09%), Postives = 175/221 (79.19%), Query Frame = 0


Query: 1   MGAKARKAMKKKLNKAT--------PLSSDKKESADFLPLEGGPGRKLPV-QKPLESTAT 60
           MGAKA+KA+KK + K          PL  + K SADFLPLEGGP RK PV   PL++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADS 120
           VLYIGRIPHGF+E E+E FF QFG VKR+R+ARNKKTGKSKHFG+++FE PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVD 180
           M++YLL EH+LKVH+I+PE+V P LW+GF    +P++  ++ER+  NKERTLEEH+K++ 
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRDQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +I+K+DQ R+KRI AAGI+YECPE+VG+ QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

[Close]

BLAST of CSPI06G03810 vs. TAIR 10
Match: AT3G52660.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 22  DKKESADFLPLEGGPGRKLPVQ-KPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRL 81
           +++E  D +  E    +K  V+   L    + +Y+G IP    E +++GF G  G+V  +
Sbjct: 62  EEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEV 121

Query: 82  RIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGF 141
           RI R K +G  K + +V F S ++A    D+++N       +K      +H   +L+ G 
Sbjct: 122 RIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH---RLFLG- 181

Query: 142 NYRHRPLNWSELERK 156
              + P NW E + K
Sbjct: 182 ---NVPRNWMESDIK 189

[Close]

BLAST of CSPI06G03810 vs. TAIR 10
Match: AT3G52660.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 22  DKKESADFLPLEGGPGRKLPVQ-KPLESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRL 81
           +++E  D +  E    +K  V+   L    + +Y+G IP    E +++GF G  G+V  +
Sbjct: 62  EEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEV 121

Query: 82  RIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEHILKVHLIDPEHVHPKLWKGF 141
           RI R K +G  K + +V F S ++A    D+++N       +K      +H   +L+ G 
Sbjct: 122 RIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH---RLFLG- 181

Query: 142 NYRHRPLNWSELERK 156
              + P NW E + K
Sbjct: 182 ---NVPRNWMESDIK 189

[Close]

BLAST of CSPI06G03810 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 30/110 (27.27%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 41  PVQKPLESTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVE 100
           P ++ +ES + +  L+IG I     E+ ++ +FG++G +    I R++ TG+++ FG++ 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FESPEVAKIVADSMH-----------------NYLLYEHILKVHLIDPEH 132
           F  P VA+ V    H                   +L  H   +HLI P H
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

[Close]

BLAST of CSPI06G03810 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-06
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 46  LESTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVA 105
           ++S    L+IG I     E+ ++ +F  FG+V    I +++ TG+++ FG+V F  P VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 106 KIVADSMHN 115
           +IV    HN
Sbjct: 61  EIVITEKHN 69

The following BLAST results are available for this feature:

BLAST of CSPI06G03810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8JIY8	2.2e-29	44.97	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=...	[more]
Q7SYS2	2.8e-29	43.18	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=...	[more]
O74978	4.8e-29	40.00	Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra...	[more]
Q6GL69	1.8e-28	46.15	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis...	[more]
Q3SZM1	7.7e-27	38.71	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=N...	[more]

BLAST of CSPI06G03810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCE3	1.6e-115	99.06	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV...	[more]
A0A1S3C4U7	3.6e-112	96.70	uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1E350	2.7e-107	92.45	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JZE0	3.5e-107	90.57	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1JIS9	4.3e-105	91.04	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CSPI06G03810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140894.1	3.2e-115	99.06	uncharacterized RNA-binding protein C1827.05c [Cucumis sativus] >KAE8646629.1 hy...	[more]
XP_008456579.1	7.4e-112	96.70	PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo]	[more]
XP_038885284.1	3.8e-108	92.92	MKI67 FHA domain-interacting nucleolar phosphoprotein [Benincasa hispida] >XP_03...	[more]
XP_022922397.1	5.5e-107	92.45	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata]	[more]
XP_022993750.1	7.2e-107	90.57	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima]	[more]

BLAST of CSPI06G03810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04600.1	5.9e-75	61.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.1	2.6e-06	27.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.2	2.6e-06	27.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	2.6e-06	27.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.1	4.5e-06	34.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..125 e-value: 7.2E-20 score: 82.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..120 e-value: 6.6E-14 score: 51.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 51..129 score: 15.016313
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..135 e-value: 9.8E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR46754	MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN	coord: 1..212
None	No IPR available	PANTHER	PTHR46754:SF9	SUBFAMILY NOT NAMED	coord: 1..212
None	No IPR available	CDD	cd12307	RRM_NIFK_like	coord: 52..125 e-value: 1.23399E-43 score: 138.862
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 34..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G03810.1	CSPI06G03810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding