CSPI06G03800 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G03800
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 3576250 .. 3576945 (-)
RNA-Seq ExpressionCSPI06G03800
SyntenyCSPI06G03800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTCCGGTCAAAGTCATACGAATTACAGTAAGAAACTGCCCCAAATCCAAGAAAACATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGAGAAGCCAAGCACCGTAGCATCCAACTAAAGGGCTAATTCATAGTTACCAGTCACACTTAGGCTTCCAAGTTTAAAATAGAGATGCAACCATGGTAATGTGTAAACAAACAATTAGATGAATAGGTCATTTCTTCAAGATTCTAATTTTGTAAGTGTTCAAAAATTTGAATATTTATTTAATTAGATTAAATTTGAAAGTTTGTATCAAAATG

mRNA sequence

TGCCTCCGGTCAAAGTCATACGAATTACAGTAAGAAACTGCCCCAAATCCAAGAAAACATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGAGAAGCCAAGCACCGTAGCATCCAACTAAAGGGCTAATTCATAGTTACCAGTCACACTTAGGCTTCCAAGTTTAAAATAGAGATGCAACCATGGTAATGTGTAAACAAACAATTAGATGAATAGGTCATTTCTTCAAGATTCTAATTTTGTAAGTGTTCAAAAATTTGAATATTTATTTAATTAGATTAAATTTGAAAGTTTGTATCAAAATG

Coding sequence (CDS)

ATGCAATACACAAACGAAAGAAGAATAAAACCTAGAACAAACCAGTATAGAAGCAAAGCCCTCAGATCTCATAGCTTTCATAGAATCATACACGGTATAAAGCAAATGGCATTTGTTCACCAAAACCCTTTACAAACAGTGATGTGTGTGAGATTAGATGTATGGATTGAACGAAAGTGGAGTAAGGATGGAGGTGGAGATAAGAAAAGGCTAATGACAAACAAAGCCATCTGCAACCGTTCACTTCATAGTGATTTTCCATCATTGGGCAAAATCGAAGTTACTGATATCAACCAAGACAGGAAAAGCCGAAGAATTCACAGTAGAATAGAAAGAATCAGAAAACAGAAGCATACCGAGGATTTTATAGAGATATCTGAAGTCCAGGATTTGGAATGGATTTCCACATGTGTTGAAATCTATTGA

Protein sequence

MQYTNERRIKPRTNQYRSKALRSHSFHRIIHGIKQMAFVHQNPLQTVMCVRLDVWIERKWSKDGGGDKKRLMTNKAICNRSLHSDFPSLGKIEVTDINQDRKSRRIHSRIERIRKQKHTEDFIEISEVQDLEWISTCVEIY*
Homology
[Close]
BLAST of CSPI06G03800 vs. ExPASy TrEMBL
Match: A0A0A0K8H8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 36  MAFVHQNPLQTVMCVRLDVWIERKWSKDGGGDKKRLMTNKAICNRSLHSDFPSLGKIEVT 95
           MAFVHQ PLQTVMCVRLDVWIERKWSKDGGGDKKRLM NKAICN S++ DFPSLGK EV 
Sbjct: 1   MAFVHQKPLQTVMCVRLDVWIERKWSKDGGGDKKRLMMNKAICNLSIYIDFPSLGKTEVP 60

Query: 96  DINQDRKSRRIHSRIERIRKQ 117
           +INQD+KS RI+S+  + + Q
Sbjct: 61  NINQDKKSLRIYSQKSKKKNQ 81

[Close]
BLAST of CSPI06G03800 vs. NCBI nr
Match: KAE8646628.1 (hypothetical protein Csa_023588, partial [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 65  GGDKKRLMTNKAICNRSLHSDFPSLGKIEVTDINQDRKSRRIHSRIERIRKQ 117
           GGDKKRLM NKAICN S++ DFPSLGK EV +INQD+KS RI+S+  + + Q
Sbjct: 10  GGDKKRLMMNKAICNLSIYIDFPSLGKTEVPNINQDKKSLRIYSQKSKKKNQ 61

The following BLAST results are available for this feature:
BLAST of CSPI06G03800 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G03800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H82.4e-2776.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G044010 PE=4 SV=1[more]
BLAST of CSPI06G03800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646628.11.0e-0865.38hypothetical protein Csa_023588, partial [Cucumis sativus][more]
BLAST of CSPI06G03800 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G03800.1CSPI06G03800.1mRNA