CSPI06G02750 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02750
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr6: 2190061 .. 2190806 (+)
RNA-Seq Expression	CSPI06G02750
Synteny	CSPI06G02750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGTAAGTATATTTTTCTTTCAAATCTTTTAATTTGCTTCTAAAATTGCATGATCAATGCTATATTAATTCTTGTCATTTCTTGATCAACATTTTAGACTACTATTATTTTTTTATGTATATATTGTGAGAACAATGTTGTTACATAATAATTATCTTGATTGTTTTGTGGCAGATTTTTCTCTTAATCTTTTATTTTCTTTATAGTTTATGGTTTAATCTAATTAATTCGAAATATATGGTTTGTTTTTTAGGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

mRNA sequence

ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Coding sequence (CDS)

ATGTTCTTGGTCAAGCTTACAAACTTTGATCCTCTTCTTGACGCAACCTCCTTTTTTGCTCAAATTTCCTTCGACGATGCTGATGTGAAATTCACGCCTTCGAAATTCTTCATAATTTCCTCGCACCGTTCCCCTCGCTTCATCGCAACGCTACAATTGTCGCCACAATGGTTCACTAGTTTTTCCGTTGATCATGATCATAGTTCTAAGGTTTCCCTTGAATCCTTCCATGATGCTATATTGGATGGTGGAAGTTTTGCTTCAATGACAATCCATCTTTTGGACAAAACAAACCAAATAATCCTTAGATTTGATACTCCTTCAAGCGAAATCCAACCTTTGCATCATGAATTGGCATTGTCACCTCCCCAAGCAGAAGACAATCAAATTGGCCAACATGAACTTGACGAAGGAAAATATTTCATAGTTAAATCTAAGGCATTAAGACGAATTATTAAAGAGTTACCTATCTTCCAAAATGATTCAAGTAATTGA

Protein sequence

MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELALSPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN*

Homology

[Close]

BLAST of CSPI06G02750 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 165
           SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDSSN 164

[Close]

BLAST of CSPI06G02750 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. ExPASy TrEMBL
Match: A0A5D3BV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00830 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-62
Identity = 120/162 (74.07%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLT F+PLLD+TS+ AQ S D+AD+KF P K F+I  +RSPRF ATLQLSP+WF++
Sbjct: 1   MFLVKLTEFEPLLDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           +SVDH HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQ+ LRFDTPSS+IQP HHEL L
Sbjct: 61  YSVDHVHSSKVSLESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPSSQIQPSHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQ+ED QI +HELD  K+ IVKSK+LRR+IKELPIF NDS
Sbjct: 121 SPPQSEDIQICEHELDLDKFVIVKSKSLRRVIKELPIFHNDS 162

[Close]

BLAST of CSPI06G02750 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.2e-50
Identity = 106/162 (65.43%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLV+L  F+PL+DATS  AQ++  DADVKFTP    II S+RSP+F+ATLQLS + FT+
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVA-KDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDH+ SSKVSL+ FHDA+LDGGSF+SMTIHLLD TNQ++LRF+TPS ++ PLHHELAL
Sbjct: 61  FSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAE+  +GQ  ++ G +F V S+ LRRIIKELP+F  D+
Sbjct: 121 SPPQAEN--LGQ--VEYGNFFTVTSRELRRIIKELPLFHQDT 157

[Close]

BLAST of CSPI06G02750 vs. NCBI nr
Match: XP_031743987.1 (uncharacterized protein LOC116404759 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.0e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS
Sbjct: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL
Sbjct: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 4.9e-79
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 4.9e-79
Identity = 151/162 (93.21%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKL NFDPLLDATSF AQISFD+AD+KFTPSKFFII+SHRSPRFIATLQLSPQWFT+
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVD+DHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQ+ILRFDTPSSEIQPLHHEL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQAEDNQIGQHELDE KYFIVKSKALRRIIK+LPIFQNDS
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. NCBI nr
Match: XP_031743957.1 (uncharacterized protein LOC116404737 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 4.2e-62
Identity = 122/162 (75.31%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLT F+PLLD+T F A  S ++A VKFTP K F+I S+R P FIATLQLSP+WFT+
Sbjct: 1   MFLVKLTEFEPLLDSTYFLALYSNNNAHVKFTPGKLFLIVSNRFPNFIATLQLSPRWFTN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           FSVDH HSSKVSLESFHDA+LDGG F++M+IHLLDKTNQ+ILRFDTPSS+IQPLH EL L
Sbjct: 61  FSVDHVHSSKVSLESFHDAMLDGGEFSTMSIHLLDKTNQMILRFDTPSSQIQPLHRELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQ+ED++IGQHEL+  K+FIV SK+LRR+IKELPIFQNDS
Sbjct: 121 SPPQSEDDRIGQHELNLQKFFIVTSKSLRRVIKELPIFQNDS 162

[Close]

BLAST of CSPI06G02750 vs. NCBI nr
Match: TYK02994.1 (uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 4.2e-62
Identity = 120/162 (74.07%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MFLVKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTS 60
           MFLVKLT F+PLLD+TS+ AQ S D+AD+KF P K F+I  +RSPRF ATLQLSP+WF++
Sbjct: 1   MFLVKLTEFEPLLDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSN 60

Query: 61  FSVDHDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPSSEIQPLHHELAL 120
           +SVDH HSSKVSLESFHDA+LDGG F+SM+IHLLDKTNQ+ LRFDTPSS+IQP HHEL L
Sbjct: 61  YSVDHVHSSKVSLESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPSSQIQPSHHELTL 120

Query: 121 SPPQAEDNQIGQHELDEGKYFIVKSKALRRIIKELPIFQNDS 163
           SPPQ+ED QI +HELD  K+ IVKSK+LRR+IKELPIF NDS
Sbjct: 121 SPPQSEDIQICEHELDLDKFVIVKSKSLRRVIKELPIFHNDS 162

The following BLAST results are available for this feature:

BLAST of CSPI06G02750 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K902	2.0e-86	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A5D3DZ07	2.4e-79	93.21	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CL88	2.4e-79	93.21	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A5D3BV00	2.0e-62	74.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8J1	5.2e-50	65.43	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]

BLAST of CSPI06G02750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743987.1	6.0e-85	100.00	uncharacterized protein LOC116404759 [Cucumis sativus]	[more]
XP_008464344.1	4.9e-79	93.21	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
KAA0045262.1	4.9e-79	93.21	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]
XP_031743957.1	4.2e-62	75.31	uncharacterized protein LOC116404737 [Cucumis sativus]	[more]
TYK02994.1	4.2e-62	74.07	uncharacterized protein E5676_scaffold46G00830 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI06G02750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..162 e-value: 9.7E-16 score: 59.8
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02750.1	CSPI06G02750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane