CSPI06G02170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr6: 1605216 .. 1605536 (-)
RNA-Seq Expression	CSPI06G02170
Synteny	CSPI06G02170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA

mRNA sequence

ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA

Coding sequence (CDS)

ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA

Protein sequence

MAGKDLPSFYEWRMEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRSALIISFLRLRYVRRDDEVQTGSIFFKRKYLSTQ*

Homology

[Close]

BLAST of CSPI06G02170 vs. ExPASy TrEMBL
Match: A0A0A0KBS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014575 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 14  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 73
           MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS
Sbjct: 1   MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74  ALIISFLRLRYVRRDDEVQTGSIFFKRKYLSTQ 107
           A+IISFLRLRYVRRDDEVQ+GSIF+KRKYLSTQ
Sbjct: 61  AVIISFLRLRYVRRDDEVQSGSIFYKRKYLSTQ 93

[Close]

BLAST of CSPI06G02170 vs. ExPASy TrEMBL
Match: A0A5A7U9Z3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001910 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MAGKDLPSFYEWRMEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERER 60
          MAGK+LPSFY+ R+EQKR EIE AETGQIG+G EFKEED W+KKLS+EKSKSTRE + + 
Sbjct: 1  MAGKNLPSFYDRRIEQKRNEIEMAETGQIGKGFEFKEEDGWEKKLSIEKSKSTRERKTQA 60

Query: 61 GRERRRRATGTRSALIISFLRLRYVRRDDEVQTGSIF 98
          G          +   +ISFLRLRYVRRDD+V++GS+F
Sbjct: 61 GPPE-------QDLQLISFLRLRYVRRDDKVRSGSVF 90

[Close]

BLAST of CSPI06G02170 vs. NCBI nr
Match: KGN45837.1 (hypothetical protein Csa_004958 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-38
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 14  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 73
           MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS
Sbjct: 1   MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74  ALIISFLRLRYVRRDDEVQTGSIFFKRKYLSTQ 107
           A+IISFLRLRYVRRDDEVQ+GSIF+KRKYLSTQ
Sbjct: 61  AVIISFLRLRYVRRDDEVQSGSIFYKRKYLSTQ 93

[Close]

BLAST of CSPI06G02170 vs. NCBI nr
Match: KAA0052000.1 (hypothetical protein E6C27_scaffold60G004850 [Cucumis melo var. makuwa] >TYK04559.1 hypothetical protein E5676_scaffold409G001910 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-21
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MAGKDLPSFYEWRMEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERER 60
          MAGK+LPSFY+ R+EQKR EIE AETGQIG+G EFKEED W+KKLS+EKSKSTRE + + 
Sbjct: 1  MAGKNLPSFYDRRIEQKRNEIEMAETGQIGKGFEFKEEDGWEKKLSIEKSKSTRERKTQA 60

Query: 61 GRERRRRATGTRSALIISFLRLRYVRRDDEVQTGSIF 98
          G          +   +ISFLRLRYVRRDD+V++GS+F
Sbjct: 61 GPPE-------QDLQLISFLRLRYVRRDDKVRSGSVF 90

The following BLAST results are available for this feature:

BLAST of CSPI06G02170 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G02170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBS8	1.3e-38	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014575 PE=4 SV=1	[more]
A0A5A7U9Z3	1.5e-21	63.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI06G02170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45837.1	2.7e-38	96.77	hypothetical protein Csa_004958 [Cucumis sativus]	[more]
KAA0052000.1	3.0e-21	63.92	hypothetical protein E6C27_scaffold60G004850 [Cucumis melo var. makuwa] >TYK0455...	[more]

BLAST of CSPI06G02170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02170.1	CSPI06G02170.1	mRNA