CSPI06G02140 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G02140
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-H2 finger protein ATL74
Location	Chr6: 1588409 .. 1589083 (+)
RNA-Seq Expression	CSPI06G02140
Synteny	CSPI06G02140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGGAGTCCAATCACCACCGTCCGCGTCCCCCTCGCCTCCTCCTCGACCCCGACACGACGGCACCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAATGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATCCCGGTCGCCGTGTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGCGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGGAATCGAGGCGCCGGACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGTAA

mRNA sequence

ATGAGGATGGAGTCCAATCACCACCGTCCGCGTCCCCCTCGCCTCCTCCTCGACCCCGACACGACGGCACCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAATGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATCCCGGTCGCCGTGTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGCGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGGAATCGAGGCGCCGGACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGTAA

Coding sequence (CDS)

ATGAGGATGGAGTCCAATCACCACCGTCCGCGTCCCCCTCGCCTCCTCCTCGACCCCGACACGACGGCACCACCGTCAAATGGAAGCAGAACGCGAAATTCATATAACAATGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGCTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACCGCTACAGGGCTAAAGAAAAGCGCATTACGCCAAATCCCGGTCGCCGTGTATGGGTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATGGCCGGCGAGAAAATAAAAATACTCCCGAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGGAATCGAGGCGCCGGACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCATCATGTCCGACATGTCGTCAATCACTGCTGGAACAACAATCCGTTTCGGAATCGGCGGTAACCGAGGCGGGTAA

Protein sequence

MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRGAGPRISRSMYRYLVSFPLIMSDMSSITAGTTIRFGIGGNRGG*

Homology

[Close]

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-45
Identity = 96/163 (58.90%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+P   AP +   + +    N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGI-NDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK+++LPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 87/149 (58.39%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE +++LPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-39
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 14  RLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+       ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC 
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 74  RRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIK 133
              +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE+++
Sbjct: 63  FGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERVR 122

Query: 134 ILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +LP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 35  YNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGT-ASRLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLEQ-QSVSESAVTEAGNRGAGPRIS 189
           HSSCPTCR  L++  + +++ + T + N    P+ S
Sbjct: 166 HSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQDS 201

[Close]

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-30
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE 167
           H +CP CR  L+E
Sbjct: 170 HLTCPKCRNCLVE 182

[Close]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.4e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RGAG 185
           RGAG
Sbjct: 181 RGAG 184

[Close]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.8e-91
Identity = 171/182 (93.96%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 3   MESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRG 182
           LGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGNR 
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AG 185
           AG
Sbjct: 181 AG 182

[Close]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.6e-86
Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RP R LLD D TAPPSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESAV EAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RGAG 185
           R AG
Sbjct: 181 RPAG 184

[Close]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.0e-85
Identity = 159/184 (86.41%), Postives = 168/184 (91.30%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES   +AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAG 185
           R AG
Sbjct: 181 RPAG 184

[Close]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.2e-84
Identity = 158/184 (85.87%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES   +AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RGAG 185
           R AG
Sbjct: 181 RPAG 184

[Close]

BLAST of CSPI06G02140 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RGAG 185
           RGAG
Sbjct: 181 RGAG 184

[Close]

BLAST of CSPI06G02140 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 5.8e-91
Identity = 171/182 (93.96%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 3   MESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGNRG 182
           LGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGNR 
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AG 185
           AG
Sbjct: 181 AG 182

[Close]

BLAST of CSPI06G02140 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 168/184 (91.30%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPRP RLLLD DTTA PSNGSRTRNSY+NEANFDTNMVIILAALLCALI AL
Sbjct: 1   MTMESNHHRPRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALIFAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRL ATGLKKSALRQIPVAVYGSE+GL+IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLKIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQS SESA  EAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAEAEAGN 180

Query: 181 RGAG 185
             AG
Sbjct: 181 PPAG 184

[Close]

BLAST of CSPI06G02140 vs. NCBI nr
Match: XP_022134542.1 (RING-H2 finger protein ATL74 [Momordica charantia])

HSP 1 Score: 327.8 bits (839), Expect = 7.4e-86
Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RP R LLD D TAPPSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESAV EAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RGAG 185
           R AG
Sbjct: 181 RPAG 184

[Close]

BLAST of CSPI06G02140 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.3 bits (830), Expect = 8.2e-85
Identity = 159/184 (86.41%), Postives = 168/184 (91.30%), Query Frame = 0


Query: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162

Query: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES   +AGN
Sbjct: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222

Query: 181 RGAG 185
           R AG
Sbjct: 223 RPAG 226

[Close]

BLAST of CSPI06G02140 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-46
Identity = 96/163 (58.90%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+P   AP +   + +    N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANAPANANPKPKGGI-NDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           ATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK+++LPKCNHGFHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of CSPI06G02140 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-44
Identity = 87/149 (58.39%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE +++LPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of CSPI06G02140 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-41
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 0


Query: 14  RLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+       ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC 
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 74  RRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIK 133
              +     GT +     GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE+++
Sbjct: 63  FGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERVR 122

Query: 134 ILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLE 167
           +LP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of CSPI06G02140 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 35  YNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGT-ASRLTATGL 94
           Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E GG     RLT TG+
Sbjct: 46  YVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGV 105

Query: 95  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 154
           K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP C+HGFHVRCID WL+S
Sbjct: 106 KRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSS 165

Query: 155 HSSCPTCRQSLLEQ-QSVSESAVTEAGNRGAGPRIS 189
           HSSCPTCR  L++  + +++ + T + N    P+ S
Sbjct: 166 HSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQDS 201

[Close]

BLAST of CSPI06G02140 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-31
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAT---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    +   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFMAGEKIKILPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLLE 167
           H +CP CR  L+E
Sbjct: 170 HLTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of CSPI06G02140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	1.7e-45	58.90	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.1e-42	58.39	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	1.1e-39	54.25	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	2.1e-38	49.36	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	2.1e-30	47.37	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of CSPI06G02140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH2	7.4e-100	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A5D3BXT6	2.8e-91	93.96	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1BZW4	3.6e-86	88.04	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]
A0A6J1JVF4	4.0e-85	86.41	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A6J1FF16	1.2e-84	85.87	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]

BLAST of CSPI06G02140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656436.1	1.5e-99	100.00	RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protei...	[more]
KAA0052006.1	5.8e-91	93.96	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
XP_038885444.1	1.6e-88	91.30	RING-H2 finger protein ATL74-like [Benincasa hispida]	[more]
XP_022134542.1	7.4e-86	88.04	RING-H2 finger protein ATL74 [Momordica charantia]	[more]
KAG7016045.1	8.2e-85	86.41	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of CSPI06G02140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	1.2e-46	58.90	RING/U-box superfamily protein	[more]
AT5G05280.1	7.5e-44	58.39	RING/U-box superfamily protein	[more]
AT5G01880.1	7.7e-41	54.25	RING/U-box superfamily protein	[more]
AT1G49230.1	1.5e-39	49.36	RING/U-box superfamily protein	[more]
AT1G49220.1	1.5e-31	47.37	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.1E-7 score: 41.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 2.0E-13 score: 50.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 1.6E-22 score: 81.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 14..179
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..179
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 2.39101E-17 score: 70.7937
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02140.1	CSPI06G02140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane