CSPI06G01980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G01980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor SCREAM2-like isoform X1
Location	Chr6: 1483526 .. 1485076 (+)
RNA-Seq Expression	CSPI06G01980
Synteny	CSPI06G01980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGTCATGTGGGAAGCTAACAAACAGAAAAAAGATCATATAAATTTCAGCCTCCTCCTCATCATACCCTTATAAAACCACACCCCTAACTTTTTATTTCTTTTCATTTTTGTAGATCATATATTACAAAAAAGAAAAAAAGAAAGAAAGAAAAAAAGATATAAAGAGAAACAAAATATTGAAAGAGTTGAATCCATGGTTTCTAGAGAGCACAAGAAGGCTGCAGCTCTTCATGACAACCTCCAATTACTTCGCTCTATTACCAACTCTCATTCTGTAAATATTCTCCTCTCTCTCTATCTCTCTCTCTCTCTCTATTTTTCTTTTAATTATCCCAATTCAGAATTTGCATATATAAAAGCAATATACTTTGTGGGTTTTTTCTTTTTTCATGAAGAAGAAGGAATGATTTTCTAACACAATTTTAAAACAATGGTATTTTGTGTGGTGTGTGGAAGCAGCTAAACAAGGCGTCGATTATAGTGGATGCATCCAAATATATCGAGGAGCTAAAACAAAAAGTAGAAAGATTGAATCAAGATATATCCACTGTTCAAAATTCAAATCCACTTTCTCATCAATATTCTCCCATGGTATATAAATTTTAATTATTTCAAATAATATCATTTTCCTTTCTTTTGGTTTCATTCTATATCTTAACTTTAGAAAAATAAAAAGAAAATTAATTAACCAATATTATTATTTGTTTTTTTTTATTTATATTTATATAGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAGTAAGATTTCCATACACCCTTCTTTCTATATTTATATATACATTCTTTTAATCTATTATTATCATCATTCTAATCATTTCTTTTTATTCATCATTTTAATTATTTCTCCATTTCACCAATTCTAATTAATTTCATCCACACCTTGTACTATACCATACTATTTTTAAATATTTATAAATATAACAAAATATCAAAGGGTAGAAATGATTTAAATAATAGATTAAGAAATTGTGTGTTATATATATTTATAAAAAAAAAATTGTCATTCAGGAGGAATTTGCAAAATTTAACCTTAGGTAATTGAATTTTGGATGTAAGTAATGAATATAATGATAGACTTCAAATGAGATTAATGTTGGGTTTTTGTTTGGGTAGATTGAGGAAGAAGGAGAAGAAGGCATTGATGCACAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAATAAATCAAATATCTACAAGAAGGAGAATTAATTATTCCCCCCCTCCCCAGAAAAAAAAGAAGAAGAAGAAAAAAACCCCTTAATTATTTCTCCAACTTGTTTTAATCGCGGCGTTTTTTTTTTTTCAATTTATTATTATCTCTATCTGTTTGTAATGTGGTAAAAATTAATCAAT

mRNA sequence

AGTGTCATGTGGGAAGCTAACAAACAGAAAAAAGATCATATAAATTTCAGCCTCCTCCTCATCATACCCTTATAAAACCACACCCCTAACTTTTTATTTCTTTTCATTTTTGTAGATCATATATTACAAAAAAGAAAAAAAGAAAGAAAGAAAAAAAGATATAAAGAGAAACAAAATATTGAAAGAGTTGAATCCATGGTTTCTAGAGAGCACAAGAAGGCTGCAGCTCTTCATGACAACCTCCAATTACTTCGCTCTATTACCAACTCTCATTCTCTAAACAAGGCGTCGATTATAGTGGATGCATCCAAATATATCGAGGAGCTAAAACAAAAAGTAGAAAGATTGAATCAAGATATATCCACTGTTCAAAATTCAAATCCACTTTCTCATCAATATTCTCCCATGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAATTGAGGAAGAAGGAGAAGAAGGCATTGATGCACAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAATAAATCAAATATCTACAAGAAGGAGAATTAATTATTCCCCCCCTCCCCAGAAAAAAAAGAAGAAGAAGAAAAAAACCCCTTAATTATTTCTCCAACTTGTTTTAATCGCGGCGTTTTTTTTTTTTCAATTTATTATTATCTCTATCTGTTTGTAATGTGGTAAAAATTAATCAAT

Coding sequence (CDS)

ATGGTTTCTAGAGAGCACAAGAAGGCTGCAGCTCTTCATGACAACCTCCAATTACTTCGCTCTATTACCAACTCTCATTCTCTAAACAAGGCGTCGATTATAGTGGATGCATCCAAATATATCGAGGAGCTAAAACAAAAAGTAGAAAGATTGAATCAAGATATATCCACTGTTCAAAATTCAAATCCACTTTCTCATCAATATTCTCCCATGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAATTGAGGAAGAAGGAGAAGAAGGCATTGATGCACAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAA

Protein sequence

MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQNSNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD*

Homology

[Close]

BLAST of CSPI06G01980 vs. ExPASy Swiss-Prot
Match: Q9LXA9 (Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.6e-06
Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 5   EHKKAAALHDNLQLLRSIT-NSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQNSNP 64
           E ++   L+D L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +++ 
Sbjct: 156 ERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSH 215

Query: 65  LS---HQYSPMQVTVERVVKGFSINVFSEKSC---QGLLVSILEVFEELGLNVIEARVSC 124
           LS      S ++ +++  V    +N   +  C    GL+VS +   E LGL + +  +SC
Sbjct: 216 LSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISC 275

Query: 125 THTFQLQAIGEIEEEGEEG--IDAQTVKEAVVQ 149
              F LQA     E GE+   + ++  K+A+++
Sbjct: 276 FSDFSLQA--SCFEVGEQRYMVTSEATKQALIR 306

[Close]

BLAST of CSPI06G01980 vs. ExPASy Swiss-Prot
Match: Q9LSL1 (Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-05
Identity = 43/160 (26.88%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 5   EHKKAAALHDNLQLLRSITNSHS-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSNP 64
           E ++   L+D L +LRSI    S +++ SI+ DA  Y++EL  K+ +L  +   + NSN 
Sbjct: 183 ERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNN 242

Query: 65  LSH-----------------QYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEEL 124
             H                 + SP +  ++R  +   +++       GLL+S +   E L
Sbjct: 243 SHHSKLFGDLKDLNANEPLVRNSP-KFEIDRRDEDTRVDICCSPK-PGLLLSTVNTLETL 302

Query: 125 GLNVIEARVSCTHTFQLQAIGEIEEEGEEGIDAQTVKEAV 147
           GL + +  +SC   F LQA      E  + I ++ +K+A+
Sbjct: 303 GLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

[Close]

BLAST of CSPI06G01980 vs. ExPASy Swiss-Prot
Match: Q9LPW3 (Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 40/171 (23.39%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 5   EHKKAAALHDNLQLLRSITNSHS-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSNP 64
           E ++   L+D L +LRS+    S +++ASI+ DA  Y++EL Q++  L+ ++ +   S+ 
Sbjct: 272 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSSS 331

Query: 65  LSHQYSPMQVTVE---------------------------RVVKGFSINVFSEKSCQGLL 124
             H  +P   T+                            R  K  +I++F  +   GLL
Sbjct: 332 SLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRR-PGLL 391

Query: 125 VSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEEGEEGIDAQTVKEAVV 148
           +S +   + LGL+V +A +SC + F L      + + +  +  + +K  ++
Sbjct: 392 LSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLL 441

[Close]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL
Match: A0A0A0K8N7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013900 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT
Sbjct: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 160

[Close]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL
Match: A0A1S4E185 (uncharacterized protein LOC103496601 OS=Cucumis melo OX=3656 GN=LOC103496601 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 155/160 (96.88%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKKAAALHDNLQLLRSITNS   NKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSXXXNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           SNPLSHQYSPM VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT
Sbjct: 61  SNPLSHQYSPM-VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQAIGEIEEEGEE IDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 121 FQLQAIGEIEEEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL
Match: A0A6J1JV46 (uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKK AALH+ LQLLRSITNSH+LNK SIIVDASKYIEELKQKVERLNQDI+TVQN
Sbjct: 1   MVSREHKK-AALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           S    H   PMQVTVE +VKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT T
Sbjct: 61  S---IHPNHPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQA  EIEE+GEE +DAQ VKEAVV+AIKSWSQNGEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL
Match: A0A6J1HIH6 (uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKK AALH+ LQLLRSITNSH+LNK SIIVDASKYIEELKQKVERLNQDI+TVQN
Sbjct: 1   MVSREHKK-AALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           S    H   PMQVTVE +VKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT T
Sbjct: 61  S---IHPNHPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQA  EIEE+GEE +DAQ VKEAVV+AIKSWSQNGEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL
Match: A0A6J1JTS8 (uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 134/160 (83.75%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKK AALH+ LQLLRSITNSH+LNK SIIVDASKYIEELKQKVERLNQDI+TVQN
Sbjct: 1   MVSREHKK-AALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           S    H   PM VTVE +VKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT T
Sbjct: 61  S---IHPNHPM-VTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQA  EIEE+GEE +DAQ VKEAVV+AIKSWSQNGEQD
Sbjct: 121 FQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 155

[Close]

BLAST of CSPI06G01980 vs. NCBI nr
Match: XP_011656425.1 (uncharacterized protein LOC101218918 isoform X1 [Cucumis sativus] >KGN45818.1 hypothetical protein Csa_005035 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT
Sbjct: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 160

[Close]

BLAST of CSPI06G01980 vs. NCBI nr
Match: XP_004138402.1 (uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           SNPLSHQYSPM VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT
Sbjct: 61  SNPLSHQYSPM-VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of CSPI06G01980 vs. NCBI nr
Match: XP_016901983.1 (PREDICTED: uncharacterized protein LOC103496601 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 155/160 (96.88%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKKAAALHDNLQLLRSITNS   NKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKKAAALHDNLQLLRSITNSXXXNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           SNPLSHQYSPM VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT
Sbjct: 61  SNPLSHQYSPM-VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           FQLQAIGEIEEEGEE IDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 121 FQLQAIGEIEEEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of CSPI06G01980 vs. NCBI nr
Match: XP_038884497.1 (uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 148/163 (90.80%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHKK A LH+ LQLLRSITNSH+LNKASIIVDASKYIEELKQKVERLNQDISTVQN
Sbjct: 1   MVSREHKK-AVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  S---NPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120
           S   NPLSHQYSPMQVTVER+VKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC
Sbjct: 61  SIHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120

Query: 121 THTFQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           T TFQLQAI EIEEEGEE IDAQ VKEAVVQAIKSW Q+GEQD
Sbjct: 121 TDTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of CSPI06G01980 vs. NCBI nr
Match: XP_038884496.1 (uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 5.0e-68
Identity = 148/164 (90.24%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHS-LNKASIIVDASKYIEELKQKVERLNQDISTVQ 60
           MVSREHKK A LH+ LQLLRSITNSH+ LNKASIIVDASKYIEELKQKVERLNQDISTVQ
Sbjct: 1   MVSREHKK-AVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQ 60

Query: 61  NS---NPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVS 120
           NS   NPLSHQYSPMQVTVER+VKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVS
Sbjct: 61  NSIHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVS 120

Query: 121 CTHTFQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 161
           CT TFQLQAI EIEEEGEE IDAQ VKEAVVQAIKSW Q+GEQD
Sbjct: 121 CTDTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 163

[Close]

BLAST of CSPI06G01980 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 89/155 (57.42%), Postives = 116/155 (74.84%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSRE K+  +L +  QLLRSITNSH+ N  SII+DASKYI++LKQKVER NQD +  Q+
Sbjct: 1   MVSREQKR-GSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQS 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           S+  +   +PM VTVE + KGF INVFS K+  G+LVS+LE FE++GLNV+EAR SCT +
Sbjct: 61  SSEPTDPKTPM-VTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDS 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQ 156
           F L A+G +E E  E +DA+ VK+AV  AI+SW +
Sbjct: 121 FSLHAMG-LENEDGENMDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of CSPI06G01980 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-37
Identity = 84/156 (53.85%), Postives = 115/156 (73.72%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITNSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60
           MVSREHK+ ++L +   LLRSIT+SH+ ++ SIIVDASKYI++LKQKVE++N + +T + 
Sbjct: 1   MVSREHKRGSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKIN-NATTSEQ 60

Query: 61  SNPLSHQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHT 120
           S   S   +PM VTVE + KGF I V S K+  G+LV +LE FE+LGL+V+EARVSCT T
Sbjct: 61  SFRESSDPNPM-VTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDT 120

Query: 121 FQLQAIGEIEEEGEEGIDAQTVKEAVVQAIKSWSQN 157
           F L AIG    +  + IDA+ VK+AV +AI++WS +
Sbjct: 121 FSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

[Close]

BLAST of CSPI06G01980 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-10
Identity = 44/129 (34.11%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MVSREHKKAAALHDNLQLLRSITN-SHSLNKASIIV-DASKYIEELKQKVERLNQDISTV 60
           MV+ E KK A+       L+++T+   S+++ S+++ +A  YI  LK ++E L ++   +
Sbjct: 1   MVASEQKKRAS-QGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDL 60

Query: 61  QNSNPLS-HQYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120
           + +   S HQ+   +V VE++ + F + + S +  +  LV+ILE FEE+GLNV +AR SC
Sbjct: 61  KITKKESLHQF--QEVKVEKIGEMFQVKIKSPRG-ENNLVNILEAFEEMGLNVAQARASC 120

Query: 121 THTFQLQAI 127
             +F ++AI
Sbjct: 121 LDSFAMEAI 125

[Close]

BLAST of CSPI06G01980 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 4.0e-07
Identity = 44/153 (28.76%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 5   EHKKAAALHDNLQLLRSIT-NSHSLNKASIIVDASKYIEELKQKVERLNQDISTVQNSNP 64
           E ++   L+D L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +++ 
Sbjct: 156 ERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSH 215

Query: 65  LS---HQYSPMQVTVERVVKGFSINVFSEKSC---QGLLVSILEVFEELGLNVIEARVSC 124
           LS      S ++ +++  V    +N   +  C    GL+VS +   E LGL + +  +SC
Sbjct: 216 LSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISC 275

Query: 125 THTFQLQAIGEIEEEGEEG--IDAQTVKEAVVQ 149
              F LQA     E GE+   + ++  K+A+++
Sbjct: 276 FSDFSLQA--SCFEVGEQRYMVTSEATKQALIR 306

[Close]

BLAST of CSPI06G01980 vs. TAIR 10
Match: AT5G65640.1 (beta HLH protein 93 )

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 43/160 (26.88%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 5   EHKKAAALHDNLQLLRSITNSHS-LNKASIIVDASKYIEELKQKVERLNQDISTVQNSNP 64
           E ++   L+D L +LRSI    S +++ SI+ DA  Y++EL  K+ +L  +   + NSN 
Sbjct: 183 ERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNN 242

Query: 65  LSH-----------------QYSPMQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEEL 124
             H                 + SP +  ++R  +   +++       GLL+S +   E L
Sbjct: 243 SHHSKLFGDLKDLNANEPLVRNSP-KFEIDRRDEDTRVDICCSPK-PGLLLSTVNTLETL 302

Query: 125 GLNVIEARVSCTHTFQLQAIGEIEEEGEEGIDAQTVKEAV 147
           GL + +  +SC   F LQA      E  + I ++ +K+A+
Sbjct: 303 GLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

The following BLAST results are available for this feature:

BLAST of CSPI06G01980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXA9	5.6e-06	28.76	Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1	[more]
Q9LSL1	2.8e-05	26.88	Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1	[more]
Q9LPW3	1.8e-04	23.39	Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1	[more]

BLAST of CSPI06G01980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N7	1.4e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013900 PE=4 SV=1	[more]
A0A1S4E185	1.0e-74	96.88	uncharacterized protein LOC103496601 OS=Cucumis melo OX=3656 GN=LOC103496601 PE=...	[more]
A0A6J1JV46	1.5e-62	84.38	uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HIH6	1.5e-62	84.38	uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JTS8	1.4e-60	83.75	uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI06G01980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656425.1	2.8e-79	100.00	uncharacterized protein LOC101218918 isoform X1 [Cucumis sativus] >KGN45818.1 hy...	[more]
XP_004138402.1	2.6e-77	99.38	uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus]	[more]
XP_016901983.1	2.1e-74	96.88	PREDICTED: uncharacterized protein LOC103496601 [Cucumis melo]	[more]
XP_038884497.1	2.0e-69	90.80	uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]	[more]
XP_038884496.1	5.0e-68	90.24	uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]	[more]

BLAST of CSPI06G01980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	3.0e-39	57.42	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	4.8e-37	53.85	transcription regulators	[more]
AT1G29270.1	8.6e-10	34.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10570.1	4.0e-07	28.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G65640.1	2.0e-06	26.88	beta HLH protein 93	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..157
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 1..157
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 3..72 e-value: 1.2E-5 score: 27.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G01980.1	CSPI06G01980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding