CSPI06G01880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G01880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RRM domain-containing protein
Location	Chr6: 1404742 .. 1407302 (-)
RNA-Seq Expression	CSPI06G01880
Synteny	CSPI06G01880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCGTCTAATTCGTTTATTATCAGATGACTGCCATTCCACTTTTTTAATCTGTACCCGCAACGCACCGATTCAAATCCTCTTCCGGGCCTCTCTCCTCTTTTCTATAGCCCATTTCAACTATTAAGGCCCAAAAGCCCATTAGAAGTTACAAACAAAACCCTAATCCTAATTAGCGTTCCCTTTTCCGCGATTTCTCTCTCACGTTCCCCAATTCTGCTCTCCCTTCACCGCCAATTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCGCCGCCCTCAAAGTTGTTCGATCCCCCTCCGTAAGTGGAGATGCGCATAAGCTAGGCCAGACACTCGCGATACCAAAATGATCTGAAAGCTCGTTTGTTCTTCATGGTGAATCTTTTTCTCTTTTGTTGTGTCATGTAGTTTTTAACCTTAGTTTACAGTATGAAAAATTAGGCTAACTCCTTTAATCGCCGTATTAGATCTCTTATTAGAGATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGGTATGAGTTTCAGAATCTCAGTCTCTCAACTTGAATTTCAATTTAGTGCTTAAATAATTGCATTTTGTTAACTTTAATTTGTGATTCTTAGGCGATGGTTGATATTTATTAGATGGATGTTTGTTAATTTAGCACAACGTGGCATGGCTGACAAAAGTAAGAGGCTAGTTAGACAAATGAAGGGACAAATTCAATATGCCTTATGGATTCTTGTCACTGGATTCTGTTTATAGCTATCCTCTCTCTTGTCATCCGTTTATTTGCCATATTCTGCTAAATCAATCTATTACCTTTTGTTTATCTACTAAACATATCATCGAAAGTTAATGTATGTAATTAGATCTTTTTAAGTTTTAAAATTAAATAAACACGACCATTAACCTTCGGACTTGATTTTTAATTTGGTCAAATTATAAGATTGGTTTCACAACTTTGAGAATGTCTCTTGATTATCTAGTTCGTATTAGTGTTGTTGATGCGTAGCCGGCGCTGGCCAGAAGGGATCACCTTTTGCACCTTTTAGTTGCCTTGAACATATGTGCAAGGTGACGCAGATGCTCGCCTTGTTCAATTGTTCAACTTAGTTTTTTACAAAAGGAAAAAAATTCTTCTCCAATACTTTGATAAGAGAAAGTATAGAAGTTTGTAAAGGTAGAATTCAAAAAATCAAAGGAAGGAAGAAAATTTGAAGAAAAAAAGAGTGAAAGAAGTAGAAACAAAATTGAAGCGCTCTTTTCATACATTCCTAGAATTTTCTTTCAAGCTTTCCTTTAAGAATTTATAATTTAATATTATTATTTATTATTTTATTAACTGCATCCCGCTTCGCTCCAATAATAGACTCTTTTTCATACATTCCTAGAGTTTATAACCTTTAGGTGGCACCTTGGATCTTGAAAACACCGATTCATATAATTTTAAATCTCTTTGGTAGGTCTCTTCAACTTTTCTGTTCTGTTTTATAGGTGTCTACTGTGAATCCCATATTCCCATAGGTTTAGGTTTCATGCTTTTGCACCAAACACCTTTGAAAATTGAAACCAACCGATATGGATACCGGCGTACTGCTCAAGTAAGTATTAAGCTAGTGGAGTTAACAACAGATTTATTAGGCTTGAAGTTAAAATGTTCGACACTTATTGAAGTACAAACATTAAATAGATACAAACTTGGAAGTGGGGAATCTATTAGAAAACCTTTAGAATACAGGGCTAAGTAAATGGATTCTAAAAGTTTAGGGATGATATTGGTAATTTGGTCTCGGTCAGATAATTCTTAACGCTGAAAAGTGGTTTGTCCAATTTCTTTGCAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAATTAAAGCCTCTGAAGCTTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGTATGAATAGAGATGAATTACAGACTTTTGTGATTTAGAGGGAGAAAAATAGATACTTGGTATAATACTCCTAACAACAAGG

mRNA sequence

TCCTCGTCTAATTCGTTTATTATCAGATGACTGCCATTCCACTTTTTTAATCTGTACCCGCAACGCACCGATTCAAATCCTCTTCCGGGCCTCTCTCCTCTTTTCTATAGCCCATTTCAACTATTAAGGCCCAAAAGCCCATTAGAAGTTACAAACAAAACCCTAATCCTAATTAGCGTTCCCTTTTCCGCGATTTCTCTCTCACGTTCCCCAATTCTGCTCTCCCTTCACCGCCAATTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCGCCGCCCTCAAAGTTGTTCGATCCCCCTCCGTAAGTGGAGATGCGCATAAGCTAGGCCAGACACTCGCGATACCAAAATGATCTGAAAGCTCGTTTGTTCTTCATGGTGAATCTTTTTCTCTTTTGTTGTGTCATGTAGTTTTTAACCTTAGTTTACAGTATGAAAAATTAGGCTAACTCCTTTAATCGCCGTATTAGATCTCTTATTAGAGATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAATTAAAGCCTCTGAAGCTTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGTATGAATAGAGATGAATTACAGACTTTTGTGATTTAGAGGGAGAAAAATAGATACTTGGTATAATACTCCTAACAACAAGG

Coding sequence (CDS)

ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA

Protein sequence

MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVMADGTARRLAKHYNMRISDD*

Homology

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BLAST of CSPI06G01880 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.2e-105
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAKHYNMRISDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of CSPI06G01880 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAK+YNMR+SDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of CSPI06G01880 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 163/199 (81.91%), Postives = 183/199 (91.96%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
             +DPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LKGNYKKYEI++ VM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
            DGTARRLA+ YNMR++DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of CSPI06G01880 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.2e-86
Identity = 163/199 (81.91%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
            DGTARRLA+ YNMR++DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of CSPI06G01880 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.6e-83
Identity = 157/199 (78.89%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  +EQFA FEEKVKRTVYVDNLS QVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAEVEMFDDRP+KPG KISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDF+VA+++K  ++KH AE AFL+KQ + EEEKLAKQQQE LKGNYKK+EIV+SVM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
            DGTARRLAK Y+MR+ DD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

[Close]

BLAST of CSPI06G01880 vs. NCBI nr
Match: XP_004138411.1 (uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical protein Csa_005005 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAKHYNMRISDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of CSPI06G01880 vs. NCBI nr
Match: XP_008441485.1 (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 4.0e-99
Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAK+YNMR+SDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of CSPI06G01880 vs. NCBI nr
Match: XP_038886330.1 (uncharacterized protein LOC120076542 [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 8.6e-94
Identity = 178/199 (89.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KDEQFAMFEEKVKRTVYVDNLS  VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+S
Sbjct: 1   MGSMKDEQFAMFEEKVKRTVYVDNLSPHVTEPVLRTALDQFGTVVSVHFIPNYTEPINTS 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           E DDPDFEVA+++K L++KHVAEAAFL+K H+AEEEKLAKQQQE LKGNYKKYEIV+SVM
Sbjct: 121 EKDDPDFEVAKKMKLLTRKHVAEAAFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180

Query: 181 ADGTARRLAKHYNMRISDD 200
           ADGTARRLAK YNMR+SDD
Sbjct: 181 ADGTARRLAKRYNMRVSDD 199

[Close]

BLAST of CSPI06G01880 vs. NCBI nr
Match: KAG6592987.1 (hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 59  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 118

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 119 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 178

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 179 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 238

Query: 181 ADGTARRLAKHYNMRISDD 200
            DGTARRLA+ YNMR++DD
Sbjct: 239 TDGTARRLARRYNMRVADD 257

[Close]

BLAST of CSPI06G01880 vs. NCBI nr
Match: KAG7025396.1 (hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 58  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 117

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 118 QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 177

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 178 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 237

Query: 181 ADGTARRLAKHYNMRISDD 200
            DGTARRLA+ YNMR++DD
Sbjct: 238 TDGTARRLARRYNMRVADD 256

[Close]

BLAST of CSPI06G01880 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-49
Identity = 92/195 (47.18%), Postives = 140/195 (71.79%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDF+ AR++KRL++KH AE +F++K+ + E EKL+KQQ ET   ++KK+E++D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKHYNMR 196
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]

BLAST of CSPI06G01880 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-47
Identity = 92/195 (47.18%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+   T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180
           + +DPDF+ AR++KRL++KH AE +F++K  + E EKL+KQQ ET   ++KK+E++D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLK--LEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKHYNMR 196
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 193

The following BLAST results are available for this feature:

BLAST of CSPI06G01880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI06G01880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7	5.2e-105	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]
A0A1S3B3J3	1.9e-99	93.97	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A6J1KVQ1	1.4e-86	81.91	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A6J1H6P8	3.2e-86	81.91	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1DB90	9.6e-83	78.89	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CSPI06G01880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138411.1	1.1e-104	100.00	uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical ...	[more]
XP_008441485.1	4.0e-99	93.97	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
XP_038886330.1	8.6e-94	89.45	uncharacterized protein LOC120076542 [Benincasa hispida]	[more]
KAG6592987.1	1.0e-86	82.91	hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025396.1	1.0e-86	82.91	hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI06G01880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	8.9e-49	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	2.9e-47	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 144..164
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..198
None	No IPR available	CDD	cd00590	RRM_SF	coord: 20..77 e-value: 2.82977E-8 score: 46.9145
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 e-value: 3.3E-4 score: 30.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..77 e-value: 8.9E-7 score: 28.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..101 score: 11.093571
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..95 e-value: 5.1E-12 score: 47.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G01880.2	CSPI06G01880.2	mRNA
CSPI06G01880.1	CSPI06G01880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding