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CSPI06G01480 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACAATTCTTTCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGGTTTGTGATTTTAACTCCGTTTTGTTTCACATTTCCAGCTCCCAACTCCCAAGATCACGATTGATTTCTCGTCTTTAAGATCTTTGTTGTTAAACAGTGTTGGTTCTGGGTGCGTTTATTGGCTTCAGGTTCATGTTTGTTTTGTTGGAATATCATGATCTAATGTTGAATGGGATCGGGAGTTTAAGTTAATCTCTCTCTGGTGGATTTATTATTATTATTATATTTTTTTTTTGCATTTTCTTCTTCATAAAACAGAAGTTGATTTGAAGGGTATCTGTGTTTAGTTTGATTAATGTAGTTTTTTTATGATTGTGATCTAACAAAACAGAGAAGGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGGTATTGATTTGTATGTTTTGAGCTGGATTCTCATCTTTGAACCAAAGGGTTAAGATATATTTATTCTTTTGTATGTGTTTTAGAAACTCTGATAGCTATACCATGTTAATTGACAACCAAATTTATAAGTTTAAGTTTATTGGTTATAATGCATATAGATATTCTTATACACGTATTCTTGATATGCTTTCTGCTCTTGCCAAACTAATTTTTAAAGGATATTTGATTGTGGTATTAACCTCTGCCTCAAGTATATCTATCACAACCTACATATCAAATGTTCCCAAGTATCGTTTAACTGTTCAAAGGAGGTAAAATATTAAATACAATAACTCCTGATCTTGATTTGAACAATAGCAAGAGATTTTCTACAAGGATTGGATGGTGGTTTTTATTTTAAAGATGGAACTTTATCGTACTGTTTATAACACTGGCCTCTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACGTACGTTTTGATCTTCTTTCAGTTAGATTTACGTTTCACTCTGCAAAAATTTTGCTTTCACATGTTTAATTGTTTTTGAGTGTTATTTTCAACAGCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATTTGATATTTGGGAGCTCTCTCCAAGTAGATAAAATTATGCTGTGTATTGCCTCTGATTCTTGTAACCACTAACATGTTGCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTGTTGAGATCTTGACAAATAATTCATTGTCCCCTTCTTCCCCTTCAACAAAAGGAAGAGGGAACATCTGTTGGAGCAGACTAATTAGTTGGGTTCAATGTTAAAAATATTTATAAGTTTTGCTATAAAGCTGTGATACAAAATTTGAACAGTGTCATTTGGGATCAGTGAATATTCTTAGTTGCATACATTCCAATATTCATCTCATATTACTTTTAGAAAAAACAGTAGATAGTTTTATAGAGGATTATATGAATTTGTTATTAAAAATACTTGCAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGAGATGAAACATATTCTGGAATGATTTTTTGGGCAATGTGATATTATGATATATGGG CACAATTCTTTCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGAGAAGGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGAGATGAAACATATTCTGGAATGATTTTTTGGGCAATGTGATATTATGATATATGGG ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA* Homology
BLAST of CSPI06G01480 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 8.5e-94 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 8.7e-91 Identity = 155/190 (81.58%), Postives = 172/190 (90.53%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71 Identity = 122/184 (66.30%), Postives = 152/184 (82.61%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 6.5e-70 Identity = 115/184 (62.50%), Postives = 154/184 (83.70%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69 Identity = 125/189 (66.14%), Postives = 147/189 (77.78%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 3.1e-107 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 3.1e-107 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 3.2e-104 Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 3.2e-104 Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of CSPI06G01480 vs. ExPASy TrEMBL
Match: A0A6J1JU67 (LIM domain-containing protein WLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111487536 PE=4 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 2.0e-101 Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0
BLAST of CSPI06G01480 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus]) HSP 1 Score: 397.5 bits (1020), Expect = 6.4e-107 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
BLAST of CSPI06G01480 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida]) HSP 1 Score: 394.4 bits (1012), Expect = 5.4e-106 Identity = 186/189 (98.41%), Postives = 188/189 (99.47%), Query Frame = 0
BLAST of CSPI06G01480 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 387.5 bits (994), Expect = 6.6e-104 Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of CSPI06G01480 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103 Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of CSPI06G01480 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]) HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103 Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0
BLAST of CSPI06G01480 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
BLAST of CSPI06G01480 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
BLAST of CSPI06G01480 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
BLAST of CSPI06G01480 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
BLAST of CSPI06G01480 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95 Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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