CSPI06G01030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G01030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Actin-related protein 2/3 complex subunit 5
Location	Chr6: 765569 .. 769971 (+)
RNA-Seq Expression	CSPI06G01030
Synteny	CSPI06G01030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTTTAAATGAACTATTAATAAACAAAACCATCGCAACCCAAAAGACCATTCGGCGGCGAGAAAACTTGCCATCTCTTCTTTTCACAAATCACATTTAGCTCCGATTTCGTTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCGGTTTTTAGTTTAGCTCCATCAAATCCTACTGCAAGTAGGGTGATACCGCAAAGGCGAAAATGGCGACTACATGCGATTTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATTGAGAGCTTACTTAAACAGTAATGATTCCTATACCTTCTCTTTGATTTACATCATTTAATTTATTTAACTCCTCTTATTGAAGACGCCCCATTTGTCAACTTTTGTTTTCTTCCGTAAAAGGTTAAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGGGACGAGCGTTGTAAGGTATCCTTTCTTTCTTACTGCCTACTGAGCTGTCGTCTCTTGTTCAGAGCTAATGACGGTGTAGGATCGATATTCATTTTGGTTCCTTGCATTTTTTCTGTGATTATGTGTTTTGTTTTTATTATTTTATCTGTGGGTAATGCTAGAAATGTTTAGGGAAATTATTGGAGAATCCTTGTTTTTTAGTTATCATTAAATCTATTTGTTATGCTTTCTTATGTTTTCTTAATGATGATGCCAATTAGGATTTTTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTGTTTGTTTGCAGCCACTGAAAATGAATAGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTTGGTCTGCTTGACATTGGGAGGATGAGTTAATCTGATGTGATTATTTGGACTTCTTCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTGAGTTTATGCGGTATTTAACTGCAAAAATATCAATTCTCATTACTTCTACTTATTTCATTCTCATCAGGAATGTTTAAATAGTTCCAAGTTTACTTTCTGATATTATTCTTTTGCTATGAAATTTATACTTAAGTGATTGGGTTGATCCTACTATGAGCTATGTAAACAAACATTCTGTTTCTTTTTATTTTTTTAATCCCTTCAGATTTCTACTGCTAGCTGTGTTCTTGTCAGTAGGACATATGGTAGTCTTTAGATACTTGGAAGATTGGTTCACTGATATGATTTTTTTTGCTTGTGTAAGGAGTCTTCAATGGTTTATCCTTGGCTAACTTGTATTGCTTCACCCCTTTATGGTTTGGTTTTTGTCCATTGGAATGTAGAGACTTGTTCACGGCATCCTACTTTTTGAAAAGCTAGGTGTTGGCCTTTGAACGCCTTTGGAAATTAGAAATATATCAGGTTTTATGAAATTCTAAAAGTTCCAAGTGATTCAATGTTTTTGAGTGAAGAATGTTCCCCTCCTGTCTTCAAGGTTTCATTTTAATGGTTCAATGAAGTCAAAAGTCTTCCTTCAGAGATTTGGTTTGATTGTAATTAGAGGGCTCCTTCTCTCCTATCAGTTGTCCTCACCACATGGTTACTTGTTCTCAGAGTTTCAATTTCGGTGGTGTTTGTATTTGCTTTTATTTTCTGAGCAAGTCCAGTGTTGGGATATATTCCGATGCATTTGCTTTATCTTGCTTTTATGTCTCTTTGTATTTCAAGCTCTAGCCTCTCTTTGTTCATTCAGTGAAAAGTTTTGTTTCTGTTAAAAAGAAAAATTATATTTTAGCTAGGAGTCTTTGTGAAAGTGGAAATCTCTCTAACCATCTTGCTTGAAATATCTCATCACATCTTCTGAATCTAGCAAGTCATGTCCAACCCTTCTGCCGATGGGTTTTGTAAAATTTATTATTTTTGTCCTATATTATCATGTGTCTATTTAGCATGCTTAACAAGTGTTCAATACATGTCTAATAATGTGAGACATATATTGACTTTGTAGTTTATATAACTAGTTTGTAACACATGCTAACAAACATCTGACACATGTCAAACAAGTGTGGAGTGTCTGAATCATTCCAACACATACACATTAGTCAAATTAAAATGTTTGTATTTCTTTAAGGCCTTGTCTTCCAGCAGTCTCTCAATTTGTTTTCCAACACATTCCCTAATTTTCAAGGATTATGAACACCAACAAGAAATAAGTGAGGATGCTTGACAATACTAATTTGGCCAATGCTAATCCTTCCCTTTGGAACATCAGGACTGTTTCTCGTGGAGCATTTTTTGAGATTAATGACAGGGTTTCAAAAGCCAATTGGCCTCAATTAGTCTCCAAGCATAGGCACCATGTGAATCATTGGTGGGGAAGTAGTGGGGGATCGCTTTTTCTGAGATTAATGACAGTGTTTCAAAAGCCCATGACCTCGATTGTCCTCCAAGCATCAAATGGAAGGTTTTCTCTCCTGAGTATATGTTTGTTCCTCGTGTTTTAAGTACCACCAAGAATATTTGTTCATGCGATCTTATAACACTTAACCTTTTCTTTTCTTTGAAAGGATTCACCAAGAGAGAAATCGACAAACTAAAATAACTAAACAAAAAGCCTGCATTTTAAGCATGGTTGCAATAGAATAAAATATGATCTTTGTTTTCTTCTTACTATATGCATATGGCATCATACCAACTGGACGAAATGGAGAATTAGATTTCTAGCTTGGATTTTTATCTTGGGCACTATACCGATAATATCATGGAGAAGGTCCCATATGAACCAAGAGAGAAGGGAAGCTTCGTGAGAGTCATTGAGGCATTCCATTGTGAAATTTTTGGACTTTACCTTGCACTAAGATCAGAAACCATCTCAATATTCCAAAGAGATAACTATAGAAGATTTAAAAAATTACTCCAAATGGTGTATTGTTCAGTTAAGTTAACCATTTGGCCATGAACGTGATATTTCTTTTCCTTGAGATTACTAAGACTAAACTTTCCAAGATGAAGAGGAAGCTTACTCTTTTCCAAATGACAATGTATGATAGACCTTCAGTATCCATTCAGTTCCAGAAGTCCAGGAAAGACATCAGCACGTTTCAAAATTTTAGCACAAACCAAATTAATTGACAAAATATGGCTTGAAAAGGTATTCTTTAAGTTGAGAAAATTCTCTTTGCCAAAAAAAGAAAAAGGAAAAATGATGGTGTTGGGAGTCTTGTTCAAGCAGAAAAATCTCTTTGGAAGATGGTTATTTCCAGTAAATATGGGGTTAAAACTCGGTGCTTGAAAAAGTAAAGTTCCATAGAAAATCAAGATCTTCCTTTGGCCCTTGCTTGAAGAGGAGACACAAAAAAGCTCGTAGGAGACGAATCCAAAATAGGTTCTTTCTTCACTTGATTGTGGCTTATGACTTGATGGAAAAAAATCATTCTTCCACTGTCACTTTTATACTGGCTTAATTATTCAGCCTTTTCAATGTCTTCTTATGCCTTCCCCGGAACATCGAAGATTGGGTATACGAAGTGTTCTTCAATCGGTAGTTGAAAGGGAAACTGGACATCTTGGGACATGCACATTTTGATTGCCCTACACAAAGCATTATTTGATAACCATAATATTTCTTTTATCATCATTTCCAACTTGAACGCCATCCATGTAAAACCTGTGAGTAGGCCTCTAGGAAGGAGCATGATGAAGCAATTAGATACTAAAATGAATAGGAAGTGCAGAAAATATTTCCATAAACTCATCCAAAGGCAAGCGTTCTCTTTCCAGGGTTGCTGCTAGTATGATGGAATGACTATCTTCCAAAACACTAGCATGAATTCGCCTCCTTCATCGAGTGCAAAAACAACATCAAGATAGTATCAAGAAACTTTCACTAAACAAGCATTCACGGATTTTGAATCCAAATATTATGCCACATCCAACATGTGATGGGGAGCTATGCTGTTTTCTTGCCAAAACTTGAGTATTTATATGTATAACCATTTGCAGGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTGTTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTAACGTTGGATATATGTCAAACTAAGAGCTGAAAATTTACTCAATTCTTTCGAGTTTTGACAGCTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACATTTGAATGTAAATGACTGAAATTGAATATAACCTTTGGACTGGACCAAGTTAGAGCATGG

mRNA sequence

AAAATTTTAAATGAACTATTAATAAACAAAACCATCGCAACCCAAAAGACCATTCGGCGGCGAGAAAACTTGCCATCTCTTCTTTTCACAAATCACATTTAGCTCCGATTTCGTTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCGGTTTTTAGTTTAGCTCCATCAAATCCTACTGCAAGTAGGGTGATACCGCAAAGGCGAAAATGGCGACTACATGCGATTTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATTGAGAGCTTACTTAAACAGTTAAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGGGACGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTGTTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTAACGTTGGATATATGTCAAACTAAGAGCTGAAAATTTACTCAATTCTTTCGAGTTTTGACAGCTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACATTTGAATGTAAATGACTGAAATTGAATATAACCTTTGGACTGGACCAAGTTAGAGCATGG

Coding sequence (CDS)

ATGGCGACTACATGCGATTTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATTGAGAGCTTACTTAAACAGTTAAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGGGACGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTGTTAATACTGTTTGA

Protein sequence

MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADTVNTV*

Homology

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BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 8.0e-62
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 6   DFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           +FVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTVNTV 136
           R L DT+NTV
Sbjct: 123 RCLTDTINTV 132

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BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.2e-56
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]

BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 26  KIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++SL++Q + + A ++AL  SP N++++  K     +V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVL 146

[Close]

BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 26  KIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 26  KIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL
Match: A0A0A0KD59 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.4e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL
Match: A0A1S3B407 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL
Match: A0A6P4A354 (Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC107424250 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T +FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL
Match: A0A6J1BVD6 (Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LOC111006055 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.6e-67
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA   +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of CSPI06G01030 vs. NCBI nr
Match: XP_004138489.1 (actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypothetical protein Csa_005374 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 9.0e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of CSPI06G01030 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of CSPI06G01030 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 9.4e-68
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MATT +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]

BLAST of CSPI06G01030 vs. NCBI nr
Match: XP_015889484.1 (actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba])

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T +FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

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BLAST of CSPI06G01030 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILRSLADTVNTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]

BLAST of CSPI06G01030 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 237.7 bits (605), Expect = 5.7e-63
Identity = 115/130 (88.46%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 6   DFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           +FVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTVNTV 136
           R L DT+NTV
Sbjct: 123 RCLTDTINTV 132

[Close]

BLAST of CSPI06G01030 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-57
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTVNTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

The following BLAST results are available for this feature:

BLAST of CSPI06G01030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M117	8.0e-62	88.46	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
B3H6Y2	2.2e-56	79.26	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q6DE18	3.5e-09	31.43	Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5...	[more]
O15511	4.6e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=...	[more]
Q5R516	4.6e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=...	[more]

BLAST of CSPI06G01030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD59	4.4e-71	100.00	Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]
A0A1S3B407	8.3e-70	97.78	Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485...	[more]
A0A6P4A354	1.3e-67	96.30	Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC1...	[more]
W9R3V7	2.9e-67	97.04	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484...	[more]
A0A6J1BVD6	8.6e-67	94.07	Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CSPI06G01030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138489.1	9.0e-71	100.00	actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypot...	[more]
XP_008441367.1	1.7e-69	97.78	PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]	[more]
XP_038884940.1	9.4e-68	96.30	actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1...	[more]
XP_015889484.1	2.7e-67	96.30	actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]	[more]
XP_010089302.1	6.1e-67	97.04	actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin...	[more]

BLAST of CSPI06G01030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01710.1	5.7e-63	88.46	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]
AT5G65274.1	1.6e-57	79.26	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 11..131 e-value: 3.3E-22 score: 79.5
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 5..133
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	GENE3D	1.25.40.190		coord: 17..132 e-value: 1.1E-30 score: 108.1
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	SUPERFAMILY	69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 7..131
None	No IPR available	PANTHER	PTHR12644:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5	coord: 5..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G01030.1	CSPI06G01030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding