CSPI06G00300 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G00300
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr6: 263517 .. 263852 (-)
RNA-Seq ExpressionCSPI06G00300
SyntenyCSPI06G00300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG

mRNA sequence

ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG

Coding sequence (CDS)

ATGTTCGTCTTCATACTCGACGAAATCCACAGCTTCGTCGATGCCGTCTCCGCCCTCGCCGGCCTTGGCTACGTATTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTTCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCACTTTTTCCCCGAAATGTTCCATTTGGAACGAACCGGTTTTTCTTCGCTCACATTCTCTTTCGCAGATTCGCATCATGCCGACCTCACATTTTGCAGCCGTGATGGTTAG

Protein sequence

MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG*
Homology
BLAST of CSPI06G00300 vs. ExPASy TrEMBL
Match: A0A0A0K833 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.0e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 111

BLAST of CSPI06G00300 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.4e-53
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG 111

BLAST of CSPI06G00300 vs. ExPASy TrEMBL
Match: A0A6J1KWL1 (uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 9   IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA S LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD 104
           HY +IYI  F+  M + ER GFSSLTF+F +    D
Sbjct: 61  HYKFIYIESFYDFMHNFERKGFSSLTFTFPEPDRVD 95

BLAST of CSPI06G00300 vs. ExPASy TrEMBL
Match: A0A6J1H4N0 (uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC111460009 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.4e-16
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 9   IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA S LA     +F++KFSP MFSIMA  TPS  C I LQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD 104
           HY +IYI  F+  M + ER GFSSLTF+F +    D
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVD 95

BLAST of CSPI06G00300 vs. ExPASy TrEMBL
Match: A0A6J1L2R2 (uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           +F F+L+++   VDA S +A    + ++KFS EMF+IMA+  P+    IAL L+P FF+ 
Sbjct: 6   IFKFVLNQMQDLVDAASVVASADDMADMKFSREMFAIMADSYPALGGVIALHLWPQFFD- 65

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           +Y C +L  SW ++ + FP M  +E +GF+SL+F+      A+L F + +G
Sbjct: 66  EYVCNELLKSWTFVKNLFPLMIDMEESGFNSLSFTVTYPESAELKFQAPNG 115

BLAST of CSPI06G00300 vs. NCBI nr
Match: KGN45638.2 (hypothetical protein Csa_005465, partial [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD 111
           QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD 110

BLAST of CSPI06G00300 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 9.2e-53
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 112
           QYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG 111

BLAST of CSPI06G00300 vs. NCBI nr
Match: WP_217833378.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 134.0 bits (336), Expect = 7.8e-28
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 0

Query: 5  ILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSC 64
          +LDEIH FVDA+S LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSC
Sbjct: 1  MLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSC 60

Query: 65 QQLHYSWIYINHFFPE 81
          QQLHYSWIYIN FFPE
Sbjct: 61 QQLHYSWIYINQFFPE 76

BLAST of CSPI06G00300 vs. NCBI nr
Match: KAG6575236.1 (hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-17
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0

Query: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MF FILD+ H   +A+  +A +  +  LKFS E  SIM + +P  +C IA+QL PP+F Q
Sbjct: 1   MFFFILDQTHELAEALYVIASVTDIAYLKFSMENMSIMGSASPETACIIAIQLCPPYF-Q 60

Query: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTF 107
            Y+C  LHYSWI I+  FP M  L R GFSSL+FSF   + A+L F
Sbjct: 61  TYTCDHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLVF 105

BLAST of CSPI06G00300 vs. NCBI nr
Match: XP_023548336.1 (uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 9   IHSFVDAVSALA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA S LA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETFDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHAD 104
           HY +IYI  F+  M + ER GFSSLTF+F +    D
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVD 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8331.0e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1[more]
A0A5D3BU354.4e-5394.59LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1KWL11.9e-1655.21uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888... [more]
A0A6J1H4N07.4e-1654.17uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1L2R22.9e-1238.74uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308... [more]
Match NameE-valueIdentityDescription
KGN45638.21.0e-56100.00hypothetical protein Csa_005465, partial [Cucumis sativus][more]
TYK02997.19.2e-5394.59LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
WP_217833378.17.8e-2882.89hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KAG6575236.14.7e-1749.06hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548336.13.1e-1655.21uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G00300.1CSPI06G00300.1mRNA