CSPI05G30750 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G30750
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA-binding protein 7-like isoform X1
Location	Chr5: 28543775 .. 28546595 (-)
RNA-Seq Expression	CSPI05G30750
Synteny	CSPI05G30750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATATTGCACTATTTTTCAAAAGGATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCATGTTAAAAAAACTCCTCCACTTCTCTCCTCAACCTTCCGCCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCACCATTTCCAAGCACAGATCACGCTACTCCTCCGAAGAACAACCAACAACCAAGCTCCTTCTGATTTACCCGTTCCTGGCGCACCCTACGAAGTGACTCCTCTCCTGAAACCCACGAACGAGCGAAACACTCTAAATTCCTTTCGAACTTAGCCTGTGGTGTTCGGTTTTGTGAAATTGAACACAATTAAAGAACTTCTGGCTTCCTTTTTTGGTAAGTTTTAAGTGAGTAAACACTCTAAATTTCTTTCGAACTTCAATAGAGTGGTTTAGAATTATCCCCAACACTTCGAAAAATCTTGTTTGTAGAGACTGCGATTTACTGATTTGGTAAACTTTTTTGAAATACTAATGGGGAATATAGTTGAAATGCAAACCACAATGGGAGAATCGAAATCGAAGCGATACTAAATAAAGGTTTATTGGGTTACTTTTTCTTATCTTTCCTTTTTGCTGCTGAACTTGCAGAGTAATCATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAAGTTTGTTATTATCTGTATCTAACTATCTTAATTCATGTTCTTTGTACTCTAATTTGTTTTTCTTTCATGAGGATTCTGTTTGCGGGTTAAGCTCCATGTTTTTACTTCTGTGAAGCTTCTAGTGAAAATTATGATCTTGAGTGGTTGGTTTTATAATAGTTGTGTTTATTTCTTTCTATTATGATTTGCTATTGGATGTATATGACACATGGCATTTGACATGTTTGTTGCTTCTCTCACACTATTGGATTTCTTCCTCTCCAACCTTTTCCTCTTTTGTAAATATGTTTGATTTCTCTTTATATCATTATTGATTTGGTGGCTTTGGTGAAGAGAGTTGATAGTTAACTTCTTTTTGTTTTTCATTGATCTCTTAGATTTTCTTCATTTTTGCTTCAATTGGTACAATCTAAAATTTTCACTTTCACCATCGTCTTTGATCTGCTTCTATGTGGGCTTTACCTATTTGAGTATTGCCGCCAGTTTGTCTGTAATATTTCTCTAACATAACTGGTTGTTCGGTGAACTTAATTTTTTGGGAAAATTTTCTTCCCCGTTTGTACTTGATACAATGTTATCTATTAAGTTTTAAGGATGCAGTCTACTTGAATTTTAGATGCCACATATTTATCTGAATTTGATTTTGTTACTTTCTTCACATTTTTTAGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCCTTCTCAACTAAATTTTTTCATTTTATCTCCATGTTTCTTGATGAACTTTGTATTCTATTCGAACGTGTACGTTTGCATGCATATATATTTGCTTTATGATCCAGTATCATGTTGTGCACCATCTCCTCTAATTTGATCCATTTTGCTCAGTAACTCAGGTTTTGATCTATATAGTGTCTATTAAAATGTGAGGTGCATTTGAAATTTTTTACCTTTTGTTTTATCTTTAATTAAAAAACCAAGCCTACAAAAAGAGGAAGCTCCCCCTACAAAGAGAGATAGACTAAAATCTCAATCTATAGATGCTTTCCTTTTGATACATTATCGTTTACTGGCAGCTCATTCCAATTTTATAATCAGATAATTGTGTAATCTTCTTGTAGCATCTATGATTGTGAATTGTTTAGTGGGGTACTAAGTTATGGAAATGACACTTTGACATTGTGCGAGCAGGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGGTGATTTTTCTTACTTTTCTTTATTTTTGTCTTTGTGTTAGTTTGCTAAAAAATTGTGTGTTTGTACTTTATTGGCCTTTTTCCACATAGCTCAACAAACTTTTATTTCTTTTATTCAGCGCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTCCATTGTGGTTAATCTTAATGGTAATATAAGTGTTAGGAAAAGTTGGACCTCTTAGATGGTTGTAGAAGGTTTGGAGGAAAATGATGCGATATTTGGCTATTTGCTATGGTGCCTACTAGCTTATGTTATTGAATATGTTGTCATTTTGCTAGGATTATGTGTTCATATGATTTGGCTATGTTGTTGTAAACTTATAGTTGATACCCTAACTAAGTATTGTAACCTATTTGATTAAATATTCAGATTTTCTATAATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATGTTGAGTCTTTACTTTCTTCTGAAGTGTTTTACTTGAGC

mRNA sequence

GTAAAATATTGCACTATTTTTCAAAAGGATCATTTTATCCGAAACCAAAACATAGGGCCATTTTTCATGTTAAAAAAACTCCTCCACTTCTCTCCTCAACCTTCCGCCCGTCAACCTCCTTCCGATCTCCTGCCTCTCTCTTCTCCGGCCACCATTTCCAAGCACAGATCACGCTACTCCTCCGAAGAACAACCAACAACCAAGCTCCTTCTGATTTACCCGTTCCTGGCGCACCCTACGAAGTGACTCCTCTCCTGAAACCCACGAACGAGCGAAACACTCTAAATTCCTTTCGAACTTAGCCTGTGGTGTTCGGTTTTGTGAAATTGAACACAATTAAAGAACTTCTGGCTTCCTTTTTTGAGTAATCATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCGCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTCCATTGTGGTTAATCTTAATGGTAATATAAGTGTTAGGAAAAGTTGGACCTCTTAGATGGTTGTAGAAGGTTTGGAGGAAAATGATGCGATATTTGGCTATTTGCTATGGTGCCTACTAGCTTATGTTATTGAATATGTTGTCATTTTGCTAGGATTATGTGTTCATATGATTTGGCTATGTTGTTGTAAACTTATAGTTGATACCCTAACTAAGTATTGTAACCTATTTGATTAAATATTCAGATTTTCTATAATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATGTTGAGTCTTTACTTTCTTCTGAAGTGTTTTACTTGAGC

Coding sequence (CDS)

ATGTCAGGAAGGTCAAATGGATGCACCATTTACATTGGTAATTTGGATGAAAAAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAGCCTAAGGGTTTTGCTTTTGCAGAGTATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTGGTAGCAATGCAATCACTTCATCATCGAGGTCGCATGAAATATCTCAGTATTCCAATCGCTTTTCCCCATCTTGCAGGTTTCCAACATATCCTGAGAACCATCTTGAAGCGCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCTGTAGATTATCCTCCTTACTAA

Protein sequence

MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY*

Homology

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BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

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BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

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BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+Y+G LDEKVS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

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BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-13
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+G LDEKVS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHKRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

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BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 4  RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDEKV+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVNLHKRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

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BLAST of CSPI05G30750 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 4.8e-97
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 179

[Close]

BLAST of CSPI05G30750 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.5e-95
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPVDYPPY 185
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]

BLAST of CSPI05G30750 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.0e-88
Identity = 167/179 (93.30%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 13  GNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRFSPSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQY+NRFS SCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 185
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]

BLAST of CSPI05G30750 vs. ExPASy TrEMBL
Match: A0A1S3CAK8 (RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 168

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 168

[Close]

BLAST of CSPI05G30750 vs. ExPASy TrEMBL
Match: A0A5D3BMI6 (RNA-binding protein 7-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00920 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.5e-79
Identity = 154/172 (89.53%), Postives = 155/172 (90.12%), Query Frame = 0


Query: 13  GNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFPTYPENHLEALLN 132
           VNLHKRTLKFAVSGQDKPSP SNAITSSS                RFPTYPENHLEALLN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFPTYPENHLEALLN 222

Query: 133 PGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 185
           PGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 223 PGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 258

[Close]

BLAST of CSPI05G30750 vs. NCBI nr
Match: XP_011656074.1 (RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical protein Csa_007721 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 8.7e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 184

[Close]

BLAST of CSPI05G30750 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 9.4e-95
Identity = 178/191 (93.19%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQYSNRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPVDYPPY 185
           DSSFPVDYPPY
Sbjct: 181 DSSFPVDYPPY 191

[Close]

BLAST of CSPI05G30750 vs. NCBI nr
Match: KAA0039300.1 (RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87
Identity = 167/179 (93.30%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 13  GNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRFSPSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQY+NRFS SCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 185
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]

BLAST of CSPI05G30750 vs. NCBI nr
Match: XP_008459561.1 (PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRSHEISQYSNRFSPSCRFP 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSS                RFP
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS----------------RFP 120

Query: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 180
           TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD
Sbjct: 121 TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVD 168

Query: 181 YPPY 185
           YPPY
Sbjct: 181 YPPY 168

[Close]

BLAST of CSPI05G30750 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 165/192 (85.94%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GN DE+VS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSS------------RSHEISQ 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSPGSNAITSSS             S+EISQ
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120

Query: 121 YSNRFSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQP 180
           YSNRFS SCRF TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQP
Sbjct: 121 YSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQP 180

[Close]

BLAST of CSPI05G30750 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.9 bits (416), Expect = 6.4e-41
Identity = 100/187 (53.48%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+YIGN+DE+VSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDK-----------PSPGSNAITSSSRS--HEIS 120
           IA+YAVKLFSGLV+L+ RTLKFA+SGQDK             P S A   S R+  H + 
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLE 120

Query: 121 QYSNR-FSPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFN 174
           ++S++  SP    P    ++ +    PG+ N     G+ L     EYS+R  G+ LDS N
Sbjct: 121 RFSSQLISPPSPLPL---DYTQEPPPPGVSN-----GASL-----EYSRRVLGSALDSIN 173

[Close]

BLAST of CSPI05G30750 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14
Identity = 31/88 (35.23%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 4   RSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   T+Y+G LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHKRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of CSPI05G30750 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 2   SGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEI 61
           SG  +G  +Y+GNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 62  ANYAVKLFSG 72
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of CSPI05G30750 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 3   GRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIA 62
           G SN   I++G L   V++        Q G + D+ +  D  + +P+GF F  Y+SEE  
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160

Query: 63  NYAVKLFSGLVNLHKRTLKFAVS-----GQDKPSPGSNAITSSSRSHEISQYSNRFSPS- 122
           +  ++     +N     +K AV         +     N+  +S  S  +++Y+  FSPS 
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 220

Query: 123 -CRFPTYPE-NHLEALLNPGLVNQF-NGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 177
              +   PE  +  A+ N G  + F +GYG  L N+    +Q Y   +   F +P S  +
Sbjct: 221 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIEL-NFEPNQTQNYGSGSSGGFGRPFSPGY 280

[Close]

BLAST of CSPI05G30750 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 3   GRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIA 62
           G SN   I++G L   V++        Q G + D+ +  D  + +P+GF F  Y+SEE  
Sbjct: 101 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 160

Query: 63  NYAVKLFSGLVNLHKRTLKFAVS-----GQDKPSPGSNAITSSSRSHEISQYSNRFSPS- 122
           +  ++     +N     +K AV         +     N+  +S  S  +++Y+  FSPS 
Sbjct: 161 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 220

Query: 123 -CRFPTYPE-NHLEALLNPGLVNQF-NGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 177
              +   PE  +  A+ N G  + F +GYG  L N+    +Q Y   +   F +P S  +
Sbjct: 221 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIEL-NFEPNQTQNYGSGSSGGFGRPFSPGY 280

The following BLAST results are available for this feature:

BLAST of CSPI05G30750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	1.9e-13	39.51	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	9.3e-13	39.74	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	2.7e-12	39.53	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CSPI05G30750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV1	4.8e-97	99.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
A0A1S3CAZ4	4.5e-95	93.19	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A5A7T7S6	7.0e-88	93.30	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CAK8	5.0e-86	89.13	RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A5D3BMI6	3.5e-79	89.53	RNA-binding protein 7-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CSPI05G30750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656074.1	8.7e-101	100.00	RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical pr...	[more]
XP_008459559.1	9.4e-95	93.19	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ...	[more]
KAA0039300.1	1.4e-87	93.30	RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008459561.1	1.0e-85	89.13	PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 ...	[more]
XP_038890192.1	1.4e-85	85.94	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]

BLAST of CSPI05G30750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	6.4e-41	53.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	3.9e-14	35.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.4e-08	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.1	6.0e-07	26.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.2	6.0e-07	26.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 9.4E-17 score: 71.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..80 e-value: 6.5E-14 score: 51.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.709315
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..91 e-value: 4.6E-19 score: 70.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..106
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..116
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 116..182
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 116..182
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..116
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G30750.1	CSPI05G30750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding