CSPI05G30660 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G30660
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 28500434 .. 28500802 (+)
RNA-Seq Expression	CSPI05G30660
Synteny	CSPI05G30660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACAACGAAGAACTTCATAGAGAGAGAGAGAGAGAAAGAGATAAGGAAGAGAAGCTTACCGGCGGAGCGGTGGCGGTTTTGCTTCGCGAACGGAGAGAAGGGGAAGGATGGGGCGGCTGGGCTGCGGCGGAAAGAAAGACGGAAGGGAACGGCGGAAGGAAAAGAGAAAAGAGAAGGAAAGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAGGGAAAAGAAAGAAAAAGGAAAAAGAAAAGAAAAGGAAAAAAGAAAAAAATTTTAACCCTAACATTCTATGACAGT

mRNA sequence

ATGGAGACAACGAAGAACTTCATAGAGAGAGAGAGAGAGAAAGAGATAAGGAAGAGAAGCTTACCGGCGGAGCGGTGGCGGTTTTGCTTCGCGAACGGAGAGAAGGGGAAGGATGGGGCGGCTGGGCTGCGGCGGAAAGAAAGACGGAAGGGAACGGCGGAAGGAAAAGAGAAAAGAGAAGGAAAGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAGGGAAAAGAAAGAAAAAGGAAAAAGAAAAGAAAAGGAAAAAAGAAAAAAATTTTAACCCTAACATTCTATGACAGT

Coding sequence (CDS)

ATGGAGACAACGAAGAACTTCATAGAGAGAGAGAGAGAGAAAGAGATAAGGAAGAGAAGCTTACCGGCGGAGCGGTGGCGGTTTTGCTTCGCGAACGGAGAGAAGGGGAAGGATGGGGCGGCTGGGCTGCGGCGGAAAGAAAGACGGAAGGGAACGGCGGAAGGAAAAGAGAAAAGAGAAGGAAAGGAGAAGGAGACGGTGGAGTCGTCGCGGCGTACGGGAGGAAGGAGAAGAGGCGCGGCGGTTGCGGCTGGGGAGAAGGGGAAGGACGCACGGGGAGGAAGAAGGAAATAG

Protein sequence

METTKNFIEREREKEIRKRSLPAERWRFCFANGEKGKDGAAGLRRKERRKGTAEGKEKREGKEKETVESSRRTGGRRRGAAVAAGEKGKDARGGRRK*

Homology

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BLAST of CSPI05G30660 vs. ExPASy TrEMBL
Match: A0A0A0KE93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051530 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 25 RWRFCFANGEKGKDGAAGLRRKERRKGTAEGKEKREGKEKETVESSRRTGGRRRGAAVAA 84
          RWRFCFANGEKGKDGAAGLRRKERRKGTAEGKEKREGKEKETVESS+RT GRRRGAAVAA
Sbjct: 5  RWRFCFANGEKGKDGAAGLRRKERRKGTAEGKEKREGKEKETVESSQRTRGRRRGAAVAA 64

Query: 85 GEKGKDARGGRRK 98
          GEKGK+ARGGRRK
Sbjct: 65 GEKGKEARGGRRK 77

The following BLAST results are available for this feature:

BLAST of CSPI05G30660 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G30660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE93	5.3e-26	95.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G051530 PE=4 SV=1	[more]

BLAST of CSPI05G30660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI05G30660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G30660.1	CSPI05G30660.1	mRNA