CSPI05G30580 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G30580
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPrv splice variant B
LocationChr5: 28439043 .. 28439348 (-)
RNA-Seq ExpressionCSPI05G30580
SyntenyCSPI05G30580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

mRNA sequence

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

Coding sequence (CDS)

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCCTCTCCCGTATTACACCACCAAAAACT

Protein sequence

MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTLSRITPPKT
Homology
BLAST of CSPI05G30580 vs. ExPASy TrEMBL
Match: A0A0A0KSQ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647520 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.9e-52
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0

Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTLSRITPPKT 103
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNT SRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

BLAST of CSPI05G30580 vs. ExPASy TrEMBL
Match: A0A5A7TDI7 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001270 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 3  LAGSSSHASHLPFNVFIGFNRHE-----EDNKYKSSTRDLYKILCIQGMKVFMDDDGGGG 62
          +A SS+H SH+ ++ FI FNR +     +   Y+  T+ LY+ LC  GMKVFM DDGGG 
Sbjct: 1  MAASSAHPSHMTYDTFISFNREQTFQAKDHLMYELFTKQLYESLCRWGMKVFMADDGGGS 60

Query: 63 GGSKKKVLMD-EDNVSDKIVKAIE 81
           G  KKV  D E N++DKIVKAIE
Sbjct: 61 SGDTKKVFTDYESNLNDKIVKAIE 84

BLAST of CSPI05G30580 vs. ExPASy TrEMBL
Match: A0A1S4E2G9 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CSPI05G30580 vs. ExPASy TrEMBL
Match: Q5DMW3 (MRGH10 OS=Cucumis melo OX=3656 GN=MRGH10 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CSPI05G30580 vs. ExPASy TrEMBL
Match: M4QW81 (Resistance gene-like protein OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 81
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

BLAST of CSPI05G30580 vs. NCBI nr
Match: KGN52630.1 (hypothetical protein Csa_008636 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-51
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0

Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTLSRITPPKT 103
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNT SRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

BLAST of CSPI05G30580 vs. NCBI nr
Match: KAA0039329.1 (TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 3  LAGSSSHASHLPFNVFIGFNRHE-----EDNKYKSSTRDLYKILCIQGMKVFMDDDGGGG 62
          +A SS+H SH+ ++ FI FNR +     +   Y+  T+ LY+ LC  GMKVFM DDGGG 
Sbjct: 1  MAASSAHPSHMTYDTFISFNREQTFQAKDHLMYELFTKQLYESLCRWGMKVFMADDGGGS 60

Query: 63 GGSKKKVLMD-EDNVSDKIVKAIE 81
           G  KKV  D E N++DKIVKAIE
Sbjct: 61 SGDTKKVFTDYESNLNDKIVKAIE 84

BLAST of CSPI05G30580 vs. NCBI nr
Match: AAU04758.1 (MRGH10 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CSPI05G30580 vs. NCBI nr
Match: XP_016902418.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 81
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CSPI05G30580 vs. NCBI nr
Match: XP_038890436.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 3  LAGSSSH-ASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSK 62
          +AGSSS+  S + F+VFI FNR EED  Y+   ++LY+ L   GMKVFMDDD        
Sbjct: 1  MAGSSSNPKSQMVFDVFISFNRDEEDENYRRFRKELYENLRGWGMKVFMDDDHDN----- 60

Query: 63 KKVLMDEDNVSDKIVKAIE 81
               DED VSDKIVKAIE
Sbjct: 61 ----HDEDKVSDKIVKAIE 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSQ69.9e-5299.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647520 PE=4 SV=1[more]
A0A5A7TDI72.0e-1251.19TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A1S4E2G93.6e-0949.35TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1[more]
Q5DMW33.6e-0949.35MRGH10 OS=Cucumis melo OX=3656 GN=MRGH10 PE=4 SV=1[more]
M4QW811.4e-0847.06Resistance gene-like protein OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN52630.12.1e-5199.02hypothetical protein Csa_008636 [Cucumis sativus][more]
KAA0039329.14.2e-1251.19TMV resistance protein N-like [Cucumis melo var. makuwa][more]
AAU04758.17.4e-0949.35MRGH10 [Cucumis melo][more]
XP_016902418.17.4e-0949.35PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
XP_038890436.11.3e-0853.16LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035897Toll/interleukin-1 receptor homology (TIR) domain superfamilyGENE3D3.40.50.10140coord: 14..96
e-value: 4.5E-5
score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G30580.1CSPI05G30580.1mRNA