CSPI05G30440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G30440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30-kDa cleavage and polyadenylation specificity factor 30-like
Location	Chr5: 28349163 .. 28355241 (+)
RNA-Seq Expression	CSPI05G30440
Synteny	CSPI05G30440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATACAAATATGAATAGTAAGACCGACGATTTATAAAAACCGAAATTCTTCTCTTTTTTCACTCGCCGATTTAACTTAACTCCGTTCAACTTCATTGCCTACTCTCCGGTAACTGCTTCTTCCTTTTGAGCTATGATCTTCTTCTTCACAACCCTAATTGCTTAACCATTCCCTTCCCTAATGGAAGATTCCGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGTCCCACGAACCCTGCCGCCACCTCCTCCTTACCCATCATCAATTCCGACTCTTCTGCCCCACCCGCTGCCTCTGCCGTCTCCAACCCCCTCTCCGGTGCCCTTGGTCCTGCTGTTTCAGCTGAACCTACGGGCGCCCCACATGGTAACGTCGGAAACCGGAGGAGCTTCCGGCAAACGGTCTGCCGGCATTGGCTTCGTAGCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGTGAGCAGGATTGCGTCTATAAGCATACCAACGAAGATATCAAGGAGTGTAATATGTAAGTTTTGAGAATTGGAATTTGGAATCTGATTGGTTTTCGTCTGATTTACGTTCTTGCTTGTTTAATTTATGTGTATTTTTCTTTTCATCGGAGGTGATCAATGTCTGTTTTCAGCTTTTATGCTTTTCTTTATCTCTAGTTGTTGAATTTTTTTAAGTATCATATGCGGTTCATCGATTTCAGACTGGAAAATTTATTTTCTTTTGAACTCTTTTTCATTTATGAATTTCTGTTGAGGATGCAGTTTTCTTTAATCTTTAATATATGAAATTATACAAACAAAATCTACTCTCCCAGGGGAAATATACAAAAGAACATCAAATTAACAGTTACATAAGTCTCCTCCTGATTTTTTTTTTTCATTCTTCGTCATTCTTGAATTCCTTGTTAACCGTAAAGCCCATGAAATGGTAGCTGCATTGATCGAACGAGTTTTTGAGCCTTTTCTTCAAAAGTTTTTGCCACCCAACAACTGTATCATTGTTTTCTAATGGATCAAAGTACATAGGAAATTGTTATCTAAAAAAAGAAAAAGAAAAAAGGGACCTAAGAGAGAGAAAAATATTGAAAAGGAATATCCCTACATCTCTTCTATATGAGCAAAGTAGTTGTAGGGAATGTTGGGCATGGTTTGTATGCACTTCTTTGATCTTTCCTTCAGTTTTCCCTTCATCAATGAAATTAATGATTCTTAAAAGGATATTCAAGTTTTAAGTTTAAGCTATGTGTATGACCGTATTATGAACATGCGTGATACATGTAAAGTTGATGTTATCATTAGACATATTTACAGCACTGGATCTTGAGGAATCCTTGTTCAAGTTTCTACAAAATCTATTGCAATAGCATGATATTTTATGTTAATTTCTGTAGTACATCTTTTTACACCCATTTTTGTCCTTTCAGAACCATGATATTATACATCTAAAGGTTAAACGCTGTAACTGCAGGTACAAGTTTGGATTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTCCACTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGTCCCTCAAACAAATTCTTTACACAACGTGGAGTTGGCTTATCCCAACAGAATGAGAAATCTCAATTTCCTCAGGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCAGCAGCAGAATCTGTTAATGTCCAACAACAGCAAGGCCAACAGTCTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAAATGCAACGTCTTTGCCTCAAGGAATATCTAGGTGTGTCTGAAGAGACCTGAAGTTTTTCTGCATGTTACTTTAACTAAATTTTTGTATCATATGAACACAGTGTTGCAGAGATATGTTATTTAACCTTCACTGTTCAAATCATATTTGTGCTTTCTTTTGGTTACTCTAAGTTCCCACTAGTCATTAGTCCGCAATGTTTTTCTTCATATCAATGTGTAGTCCATGGGACTACAAGAATTTTTAGGTAGAATAAGATTCTAACTCAGTACCTTTTAAGAGTTTAAGATGAGTACATGTAAATATTTTTTATATCAGAAAAATCACTTTCACTGAGAAGAAATAAAGAATTCAGAAGAGCATGAATTGTATCGTCTTAAGGTATTTGCAGTTTAACATGTTCTGTATCAAGCTATTAAATGCTATGTCTCTGATGTCAATTGCCAAGTTATAGAAACTGATTTTCCCTTCACGTTTATGGCTTTATTATAGATCAGCTAGAATCTGTTGGCTGAAAGCTCATACTCTGTTATAGATTGTCTTCTAACGGACTTTTTTTATGTAGTTTGGTTTAATACTTGAAAATTATGTGGTCTCTCCAGCTTCTGTAATTATACTTGCTTTGTGATTTATGCTAAATGGAGTTGGAGTTCTTTTCTGTAGAACTCAATCAGCAAGGGCTTACCCTTCTTTGGTTCTGCAACCTTTTCCATTCTTCTCCTGATAATGACTAGCAGTTGCCCATTTTTAATACAATGTGGCAAACAGAATAAAAAATCTGATTTTACGTCAACCTTTTAAATACTCTGAATGCTGTAATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTGCAATCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGTGCTAATCATTCACTCTTGTGTATGTGCACGTGTACGAGTTATGACACTATTTGGTCATTGAGGACCAAAAGTATGTTTGTTTGCGAGAATCATACTGATTTGCTATTGGCTGCTTAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTCCACATTATGGGCAAAACTTTTCACTCAAATGGCTGAAGGTTGATATTTCATTTCTTAGATCTATAGTTTTATGCAGAAATTTATCACAATTGCGTGTCTCATCATGTTGTTGCCATTTAGGGTATAGATGTTTAGGATGATTTTAATGCCATCAATTTGAGCCCTCCGTGTTGTGATGAATAATTTTAATTCATTACTTGCAGTTATGTGAGCTCTCCTTTCAGAAAACGCGTCATTTGAGGAATCCATATAATGAAAATTTACCAGTAAAGGTATAGTATCTCAAGCTTGATGAAGAAAGATTTCCATTTATATTTACATCTGCAGATGTCTTTGTCATGCTTCTTCTTTTACTTGTTTTGTGAGCTGTTGAAAATATTTTCTGCTTCTTTTGTCTTTTATGTTTATGATCCATATTTTGTTTTGCACTTTCTGGTGATAATACATAGTGCCGGTTTTGTTGAAGTCAAATCATCTGAAAGCATACGTAAGAACTTGCAATCTTGTCTTGTGCATGAAAGTTTATCCTTTTTCCCCCTCCTTTTTGGATGGGTGTGGGCGTGGGATTCTCTGGGAGCTTTCCGTAGGATTTAGTTTCTAGAAATTACATTCTGCCCTGTGTGGACTGCGATCTTTATATTATGTACGTTCCATGAATCATCTGGCAGAGAGTTCTAAAATGGTTGATACAATCCTATGAGGATTGCAATCCTGATTGACCTCACACTCTAACATTCAGCATACCTACGATTACCATCCTTGTTTACATGGCTTTCTTTTGTTTTTTAAGCTACTGTCTTGTTGCTTGTTTCATCGTGGTGACTTGTGACCCTCTATTAGTTTCACTGCTGCTAATCCTATTACTAGCAACTTCTTTGGTCTGGTAAGTTTGTTTGTTGTTCCAAAACTGGATTTTAGCCTATAAATAGTTTGTCCTTTGTTGTTATGAAAGGACATTTTAGTAAAGAATGCTTCAATATTTCTCCAATGATACTGTTACACTATCCAGATTGCTAATGTCGCATGCTAGAAGGTCTTCTGCGGAAAGACGCAGTGCAGGATAATCATTTTGTGACTAGAAAATCGGTGGATTTACTTTGGTATTTAGGAGAATTGAAAAATCCAGCAAAAGGCCACGATCTTTTATTAGATAGTGGCATGATAGTTTGATTGAGAGGGAACGAGATGACTTTCCGGAAAATTGATGATGCTGATTGTGTATCACATGAGATGGCTTTGATACCTTCACTATGCTTCAACTTTGAAGGATTTGGAAGCCATCCTGTTTATCTTTTAAAATCGTTTAATTGGCACCCTGTCTTTACTTATTTGGTTTGAAACTGCTCGTTGTCTTCGTTTGTTTCATGTCTACCATCCACATGTTCATTTCCTGGAGGATGATTTTTTGAAACTATGATATTCTTCCCTATATGTCTTGTTCTGCAATCAGTGTTAGCATTGGATACTAATTTAGCCGTCATTTTTATCACTCTTCCAACTGCAGATCAGTAGAGATTGTCAAGAGCTAGAGCCCTCTGTTGGTGAGCAGCTGGCATCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGTATGCTTGCTTTGTTCATCTTGGTCCAATAAAAAAAATTCGAAATGCACTCCCAATACAAGGTTTTGTACACATGCAAGCAGGCGAGGAAGAAAATAAAATAGGAGAAAATGCATTTTGGCAGTTCCAGGATGTGTAATTGTGTGGGTTAGCTTTAGCTGGATTTCTCAACTGTATTTTCTTTTCCTTTTTTTTTTTTATTAGGCTGTCTCAGTAGCGGCAGAATCGAAACGAGAAGAGGAAAAAGCCAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGCTGGCTTACCACCTCAGGGTAGAGGAAGGGGCAGGGGAATGATGTGGCCACCACACATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTCCCTCCTGGGATGATGGGTCCGGATGGGCTTTCTTATGGTCCTGTTACACCCGATGGATTTCCCATGCCTGACATTTTTGGTATGACCCCTCGTGGCTTTGGCCCGTACGGTCCTACTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGAGGACGACCTTCTCAACCTGCGGCTATGTTCCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGGCGTGGTCCATTCATGGGTGGGATGGGGGTTGCCGGTGCTAACCCAGCTCGTCCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCGTCTCAGAACATGAATCGAACTATTAAGAGGGATCAAAGGGGACTAACCAATGATAGATATATAGTTGGCATGGATCAAAACAAAGGCGTGGAAATTCAAAGTAGTGGACGCGATGAAGAAATGCAATATAAGCAGGGCTCAAAAGCCTATTCTGATGAGCAATATGGAACAGGAACCACCTTCAGGAATGAAGAAAGCGAAAGCGAAGACGAGGCACCTCGACGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCAACTGCAATCTCTAATCAGTGATTACTTGTAGTTAGTTCTAATATTGGAGTACTCTTTTTTTGTTTCTCTTTTAATTTTATAGGCAACTTCTTGTGACGAAAGTTATACATTTCTAAGTATTGTCGTAATTCATACATTATCTTACAAATTTGTAAGTGAACTTTCATATGAAGGGAAGAATCTCATAACTTCAATATTCGATTATGTGAAGCTGCTATGTCTTCCTCCCTTGGCCCCCTCCATTGTTGATCCCCACTTTCACCTTCTCCCTGTAAAAGAAAGGGAAGAAGAGGGAGAGTTTTCACTTGATGACAGA

mRNA sequence

CAAATACAAATATGAATAGTAAGACCGACGATTTATAAAAACCGAAATTCTTCTCTTTTTTCACTCGCCGATTTAACTTAACTCCGTTCAACTTCATTGCCTACTCTCCGGTAACTGCTTCTTCCTTTTGAGCTATGATCTTCTTCTTCACAACCCTAATTGCTTAACCATTCCCTTCCCTAATGGAAGATTCCGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGTCCCACGAACCCTGCCGCCACCTCCTCCTTACCCATCATCAATTCCGACTCTTCTGCCCCACCCGCTGCCTCTGCCGTCTCCAACCCCCTCTCCGGTGCCCTTGGTCCTGCTGTTTCAGCTGAACCTACGGGCGCCCCACATGGTAACGTCGGAAACCGGAGGAGCTTCCGGCAAACGGTCTGCCGGCATTGGCTTCGTAGCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGTGAGCAGGATTGCGTCTATAAGCATACCAACGAAGATATCAAGGAGTGTAATATGTACAAGTTTGGATTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTCCACTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGTCCCTCAAACAAATTCTTTACACAACGTGGAGTTGGCTTATCCCAACAGAATGAGAAATCTCAATTTCCTCAGGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCAGCAGCAGAATCTGTTAATGTCCAACAACAGCAAGGCCAACAGTCTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAAATGCAACGTCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAATCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTCCACATTATGGGCAAAACTTTTCACTCAAATGGCTGAAGTTATGTGAGCTCTCCTTTCAGAAAACGCGTCATTTGAGGAATCCATATAATGAAAATTTACCAGTAAAGATCAGTAGAGATTGTCAAGAGCTAGAGCCCTCTGTTGGTGAGCAGCTGGCATCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGCTGTCTCAGTAGCGGCAGAATCGAAACGAGAAGAGGAAAAAGCCAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGCTGGCTTACCACCTCAGGGTAGAGGAAGGGGCAGGGGAATGATGTGGCCACCACACATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTCCCTCCTGGGATGATGGGTCCGGATGGGCTTTCTTATGGTCCTGTTACACCCGATGGATTTCCCATGCCTGACATTTTTGGTATGACCCCTCGTGGCTTTGGCCCGTACGGTCCTACTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGAGGACGACCTTCTCAACCTGCGGCTATGTTCCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGGCGTGGTCCATTCATGGGTGGGATGGGGGTTGCCGGTGCTAACCCAGCTCGTCCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCGTCTCAGAACATGAATCGAACTATTAAGAGGGATCAAAGGGGACTAACCAATGATAGATATATAGTTGGCATGGATCAAAACAAAGGCGTGGAAATTCAAAGTAGTGGACGCGATGAAGAAATGCAATATAAGCAGGGCTCAAAAGCCTATTCTGATGAGCAATATGGAACAGGAACCACCTTCAGGAATGAAGAAAGCGAAAGCGAAGACGAGGCACCTCGACGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCAACTGCAATCTCTAATCAGTGATTACTTGTAGTTAGTTCTAATATTGGAGTACTCTTTTTTTGTTTCTCTTTTAATTTTATAGGCAACTTCTTGTGACGAAAGTTATACATTTCTAAGTATTGTCGTAATTCATACATTATCTTACAAATTTGTAAGTGAACTTTCATATGAAGGGAAGAATCTCATAACTTCAATATTCGATTATGTGAAGCTGCTATGTCTTCCTCCCTTGGCCCCCTCCATTGTTGATCCCCACTTTCACCTTCTCCCTGTAAAAGAAAGGGAAGAAGAGGGAGAGTTTTCACTTGATGACAGA

Coding sequence (CDS)

ATGGAAGATTCCGAGGGCGTTCTCAGCTTCGATTTCGAGGGCGGTCTCGATGCCGGTCCCACGAACCCTGCCGCCACCTCCTCCTTACCCATCATCAATTCCGACTCTTCTGCCCCACCCGCTGCCTCTGCCGTCTCCAACCCCCTCTCCGGTGCCCTTGGTCCTGCTGTTTCAGCTGAACCTACGGGCGCCCCACATGGTAACGTCGGAAACCGGAGGAGCTTCCGGCAAACGGTCTGCCGGCATTGGCTTCGTAGCTTGTGTATGAAGGGTGATGCTTGTGGTTTCCTTCATCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTCCGTCTCTATGGCGAGTGCCGTGAGCAGGATTGCGTCTATAAGCATACCAACGAAGATATCAAGGAGTGTAATATGTACAAGTTTGGATTCTGTCCAAATGGTCCTGATTGTCGGTATAGGCATGCAAAGCTGCCTGGACCTCCACCTCCACTGGAAGAAATCCTTCAGAAAATACAGCATTTAGGTTCATACAATTATGGTCCCTCAAACAAATTCTTTACACAACGTGGAGTTGGCTTATCCCAACAGAATGAGAAATCTCAATTTCCTCAGGTTCCAGCCCTCGTCACTCAAGGAGTGACAGGAAAACCTTCAGCAGCAGAATCTGTTAATGTCCAACAACAGCAAGGCCAACAGTCTGCACCACAAGCCAGCCAGACTCCAGTACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAGAAATGCAACGTCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGTTGCAATCGTGAGAATTTGGAATTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTCCACATTATGGGCAAAACTTTTCACTCAAATGGCTGAAGTTATGTGAGCTCTCCTTTCAGAAAACGCGTCATTTGAGGAATCCATATAATGAAAATTTACCAGTAAAGATCAGTAGAGATTGTCAAGAGCTAGAGCCCTCTGTTGGTGAGCAGCTGGCATCTTTGCTTTATCTTGAGCCAGATGGTGAACTCATGGCTGTCTCAGTAGCGGCAGAATCGAAACGAGAAGAGGAAAAAGCCAAGGGAGTTAATCCTGATATTGGAAGTGAGAACCCAGATATTGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAGTCCGCTGGCTTACCACCTCAGGGTAGAGGAAGGGGCAGGGGAATGATGTGGCCACCACACATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAGGGTTTCCCTCCTGGGATGATGGGTCCGGATGGGCTTTCTTATGGTCCTGTTACACCCGATGGATTTCCCATGCCTGACATTTTTGGTATGACCCCTCGTGGCTTTGGCCCGTACGGTCCTACTCCTAGGTTTTCCGGTGATTTTATGGGTCCTCCAACTGCTATGATGTTTCGAGGACGACCTTCTCAACCTGCGGCTATGTTCCCCCCTAGTGGGTTTGGCATGATGATGGGTCAAGGGCGTGGTCCATTCATGGGTGGGATGGGGGTTGCCGGTGCTAACCCAGCTCGTCCTGGTCGTCCTGTGGGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCGTCTCAGAACATGAATCGAACTATTAAGAGGGATCAAAGGGGACTAACCAATGATAGATATATAGTTGGCATGGATCAAAACAAAGGCGTGGAAATTCAAAGTAGTGGACGCGATGAAGAAATGCAATATAAGCAGGGCTCAAAAGCCTATTCTGATGAGCAATATGGAACAGGAACCACCTTCAGGAATGAAGAAAGCGAAAGCGAAGACGAGGCACCTCGACGATCAAGGCATGGAGAGGGTAAGAAGAAGCGGAGAGGCTCAGAAGGAGATGCAACTGCAATCTCTAATCAGTGA

Protein sequence

MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAEPTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ*

Homology

[Close]

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 770.4 bits (1988), Expect = 1.8e-221
Identity = 444/702 (63.25%), Postives = 501/702 (71.37%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MED++G LSFDFEGGLD+GP     T+S+P+      APP      N  S A+  A + +
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYD 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
            + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQ
Sbjct: 61  HSSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPP+EE+LQKIQ L +YNYG +
Sbjct: 121 DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-T 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           N+ +  R V    Q+      QVP      + G+P   ES N+QQQQ QQ  PQ SQ  V
Sbjct: 181 NRLYQARNVAPQLQDRPQ--GQVP------MQGQPQ--ESGNLQQQQQQQ--PQQSQHQV 240

Query: 241 -QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
            Q+L     +Q NR +  LPQG++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 SQTLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCEL 360
           DS +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGT  YG+NFS+KWLKLCEL
Sbjct: 301 DSVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREE 420
           SF KTR+LRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPD ELMA+S+AAE+KREE
Sbjct: 361 SFHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREE 420

Query: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPP 480
           EKAKGVNP+  +ENPDIVPFEDNEEEEEEE E EEEE   +S    PQGRGRGRG+MWPP
Sbjct: 421 EKAKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRF 540
            MP+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYG  PRF
Sbjct: 481 QMPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYG--PRF 540

Query: 541 SGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGV 600
            GDF GP   MMF GRP Q    FP  G+G MMG GRGP MGGMG A         P G 
Sbjct: 541 GGDFRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMGNA---------PRGG 600

Query: 601 SPLYPPPAV----PSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQ 660
            P+Y PPA     P   N     + D+RG++ D+      QN+                 
Sbjct: 601 RPMYYPPATSSARPGPSNRKTPERSDERGVSGDQ------QNQ----------------- 631

Query: 661 GSKAYSDEQYGTGTTFRNEESES--EDEAPRRSRHGEGKKKR 695
              ++  EQ+  G + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 -DASHDMEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 704.9 bits (1818), Expect = 9.2e-202
Identity = 409/707 (57.85%), Postives = 479/707 (67.75%), Query Frame = 0


Query: 5   EGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAEPTGA 64
           +G LSFDFEGGLD  P             +     PA  + S+P     G        G 
Sbjct: 3   DGDLSFDFEGGLDQPP-------------AGGGGGPAPHS-SDPGGVGGGGGGGGPGDGG 62

Query: 65  PHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVY 124
            HG    R S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RMP+CRFFR +GECRE DC Y
Sbjct: 63  GHGRGRGRGSYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAY 122

Query: 125 KHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFF 184
           KH+ +D+KECNMYK GFCPNGP+CRY+H KLPGPPPP+EE+LQKI  + S+     NKF 
Sbjct: 123 KHSYDDVKECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSF-----NKFN 182

Query: 185 TQRGVGLSQQNEKSQFPQVPALVTQG-------VTGKPSAAESVNV------QQQQGQQS 244
             R    +QQ E+ Q PQ   L  Q         T +P+  +          QQQQ QQ 
Sbjct: 183 QHRHNNYNQQGERPQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQ 242

Query: 245 APQASQTP-----VQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWA 304
             Q  Q P     VQS+ NG  NQ  R AT LPQG SRYFIVKSCNRENLE+SVQQG+WA
Sbjct: 243 QQQQQQKPNTNDQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWA 302

Query: 305 TQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYG 364
           TQRSNEAKLNEAF+S +NVILIFS+NRTR+FQGCAKM SRIGG + GGNWK AHGT HYG
Sbjct: 303 TQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYG 362

Query: 365 QNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGEL 424
           +NFS++WLKLCELSFQKT HLRNPYN+NLPVKISRDCQELEP +GEQLASLLYLEPD EL
Sbjct: 363 RNFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSEL 422

Query: 425 MAVSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPP 484
            A+ +AAE+K+EEEKAKGV+ D  ++N DIV F+DNEEEEEEESEEEEE +     G   
Sbjct: 423 TAILIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGN-----GQES 482

Query: 485 QGRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTP 544
           QGRGRGRGMMWPP MPM RG  P  G +GFPP M+G DG  +G     GF MPD FG+ P
Sbjct: 483 QGRGRGRGMMWPPQMPMLRGVGPMMGGRGFPPNMIG-DGFGFG----GGFGMPDPFGV-P 542

Query: 545 RGFGPYGPTPRFSGDFM--GPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGV 604
           RGF P+G  PRF GDF   GP   M+F GRP QP  MF P G  MMMG GRGP MGG+G+
Sbjct: 543 RGFPPFG--PRFPGDFARGGPMPGMVFPGRPPQPGGMF-PMGLEMMMGPGRGPLMGGLGM 602

Query: 605 AGANPARPGRPVGVSPLYPPPAVPSSQNMNRTIKRDQR---GLTNDRYIVGMDQNKGVEI 664
            G  P RP RPVG++P  PPP  P+    NR  KR+QR   G   DRY    DQ      
Sbjct: 603 GG--PGRPNRPVGMAPFMPPPPPPN----NRGTKREQRRPGGERGDRYETTSDQG----- 662

Query: 665 QSSGRDEE-MQYKQGSKAYSDEQYGTGTTFRNEESESEDE-APRRSR 687
            S G D       +G+++ S ++YG  +  R+++SES++E APRRSR
Sbjct: 663 -SRGHDATGNSGAEGARSQSGDRYGR-SALRDDDSESDEEAAPRRSR 663

[Close]

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot
Match: Q5R746 (3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-27
Identity = 74/168 (44.05%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 238  TPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNE 297
            +P  S S     + +++ +  P    RYFI+KS N  NLE+S Q+G+W+T  SNE KLN 
Sbjct: 1263 SPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNR 1322

Query: 298  AFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLC 357
            AF  +  V L+FSV  + HFQG ++M S IG   S  +W    G+   G  F ++W++  
Sbjct: 1323 AFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW----GSAGLGGVFKVEWIRKE 1382

Query: 358  ELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGE 406
             L FQ   HL NP+N+N  V+ISRD QELEP VGEQL  L    P GE
Sbjct: 1383 SLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGE 1425

[Close]

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot
Match: Q9H6S0 (3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-26
Identity = 74/168 (44.05%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 238  TPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNE 297
            +P  S S     + +++ +  P    RYFI+KS N  NLE+S Q+G+W+T  SNE KLN 
Sbjct: 1263 SPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNR 1322

Query: 298  AFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLC 357
            AF  +  V L+FSV  + HFQG ++M S IG   S  +W    G+   G  F ++W++  
Sbjct: 1323 AFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW----GSAGLGGVFKVEWIRKE 1382

Query: 358  ELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGE 406
             L FQ   HL NP+N+N  V+ISRD QELEP VGEQL  L    P GE
Sbjct: 1383 SLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLWERLPLGE 1425

[Close]

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot
Match: B2RR83 (3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-25
Identity = 77/188 (40.96%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 220  SVNVQQQQGQQSAPQASQTPVQSLSNGQPN--QLNRNATSLPQGISRYFIVKSCNRENLE 279
            S + +  Q    +  +S  P    S   P+  + +++ +  P    RYFI+KS N  NLE
Sbjct: 1258 STDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLE 1317

Query: 280  LSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWK 339
            +S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S  +W 
Sbjct: 1318 ISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS-QDW- 1377

Query: 340  YAHGTPHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASL 399
               G+   G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP VGEQL  L
Sbjct: 1378 ---GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQL 1437

Query: 400  LYLEPDGE 406
                P GE
Sbjct: 1438 WERLPLGE 1440

[Close]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL
Match: A0A0A0KSR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1)

HSP 1 Score: 1411.7 bits (3653), Expect = 0.0e+00
Identity = 706/707 (99.86%), Postives = 706/707 (99.86%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS
Sbjct: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420
           FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420

Query: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480
           KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH
Sbjct: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480

Query: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540
           MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG
Sbjct: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540

Query: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP 600
           DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP
Sbjct: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS 660
           LYPPPAVPSSQNMNR IKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS
Sbjct: 601 LYPPPAVPSSQNMNRAIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS 660

Query: 661 DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 661 DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 707

[Close]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL
Match: A0A1S3CAV8 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo OX=3656 GN=LOC103498632 PE=4 SV=1)

HSP 1 Score: 1365.9 bits (3534), Expect = 0.0e+00
Identity = 681/708 (96.19%), Postives = 693/708 (97.88%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLP+INSDSSAPPAASAVSN LSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           P GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PPGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPP+EEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPA+ TQGVTGKPSAAES NVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           Q+LSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QNLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           +ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELS
Sbjct: 301 TADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420
           FQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAESKREEE
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEE 420

Query: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480
           KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQGRGRGRGMMWPP 
Sbjct: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGMMWPPQ 480

Query: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540
           MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYGPTPRFS 
Sbjct: 481 MPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSS 540

Query: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGR-GPFMGGMGVAGANPARPGRPVGVS 600
           DFMGPPTAMMFRGRPSQP AMFPP GFGMMMGQGR GPFMGGMGV GANPARPGRPVGVS
Sbjct: 541 DFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGANPARPGRPVGVS 600

Query: 601 PLYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAY 660
           PLYPPPAVPSSQNMNR IKRDQRGLTND+YIVG+DQNKG+EIQSSGRD+EMQYKQGSKAY
Sbjct: 601 PLYPPPAVPSSQNMNRAIKRDQRGLTNDKYIVGIDQNKGLEIQSSGRDDEMQYKQGSKAY 660

Query: 661 SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 661 SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708

[Close]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL
Match: A0A5A7T8Q5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001410 PE=4 SV=1)

HSP 1 Score: 1350.5 bits (3494), Expect = 0.0e+00
Identity = 678/721 (94.04%), Postives = 691/721 (95.84%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLP+INSDSSAPPAASAVSN LSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           P GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PPGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPP+EEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPA+ TQGVTGKPSAAES NVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           Q+LSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QNLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           +ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELS
Sbjct: 301 TADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMA------------ 420
           FQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMA            
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMARKKIKYEEMHFG 420

Query: 421 -VSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQ 480
              ++AESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQ
Sbjct: 421 SSRMSAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQ 480

Query: 481 GRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPR 540
           GRGRGRGMMWPP MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PR
Sbjct: 481 GRGRGRGMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPR 540

Query: 541 GFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGR-GPFMGGMGVAG 600
           GFGPYGPTPRFS DFMGPPTAMMFRGRPSQP AMFPP GFGMMMGQGR GPFMGGMGV G
Sbjct: 541 GFGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTG 600

Query: 601 ANPARPGRPVGVSPLYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGR 660
           ANPARPGRPVGVSPLYPPPAVPSSQNMNR IKRDQRGLTND+YIVG+DQNKG+EIQSSGR
Sbjct: 601 ANPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGLTNDKYIVGIDQNKGLEIQSSGR 660

Query: 661 DEEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN 708
           D+EMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN
Sbjct: 661 DDEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN 720

[Close]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 1256.5 bits (3250), Expect = 0.0e+00
Identity = 638/715 (89.23%), Postives = 658/715 (92.03%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAA-----TSSLPIINSDSSAPPAASAVSNPLSGALGP 60
           MEDSEGVLSFDFEGGLDA PTNPAA     +SSLP+I SDSSAPP    +SN L G+LGP
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPP---PLSNSLPGSLGP 60

Query: 61  AVSAEPTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120
            ++ EP GAP  NVG RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG
Sbjct: 61  TLAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120

Query: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSY 180
           ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP +EEILQKIQHLGSY
Sbjct: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSY 180

Query: 181 NYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQA 240
           NYG SNKFF+QRGVGL QQNEKSQFPQ PA VTQGV GKPS AES NVQQQQ QQ A Q 
Sbjct: 181 NYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQT 240

Query: 241 SQTPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300
           SQT +QS+SNGQPNQLNR ATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL
Sbjct: 241 SQTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300

Query: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLK 360
           NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLK
Sbjct: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360

Query: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAES 420
           LCELSFQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAES
Sbjct: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAES 420

Query: 421 KREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGM 480
           KREEEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQS GLP QGRGRGRG+
Sbjct: 421 KREEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGI 480

Query: 481 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPT 540
           MWPPHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  
Sbjct: 481 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG-- 540

Query: 541 PRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRP 600
           PRFSGDFMGPP+AMMFRGRPSQP AMF P GFGMMMGQGRGPFMGGMGV G +PARPGRP
Sbjct: 541 PRFSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRP 600

Query: 601 VGVSPLYPPPAVPSSQNMNRTIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQY 660
           VGVSPLYPPPAVPS+QN+NR IKRDQRG T   NDRYIVG DQNKG E+ SSG DE MQY
Sbjct: 601 VGVSPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQY 660

Query: 661 KQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           KQGSKAY DEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAIS+Q
Sbjct: 661 KQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 1256.5 bits (3250), Expect = 0.0e+00
Identity = 638/715 (89.23%), Postives = 658/715 (92.03%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAA-----TSSLPIINSDSSAPPAASAVSNPLSGALGP 60
           MEDSEGVLSFDFEGGLDA PTNPAA     +SSLP+I SDSSAPP    +SN L G+LGP
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPP---PLSNSLPGSLGP 60

Query: 61  AVSAEPTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120
            ++ EP GAP  NVG RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG
Sbjct: 61  TLAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120

Query: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSY 180
           ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP +EEILQKIQHLGSY
Sbjct: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSY 180

Query: 181 NYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQA 240
           NYG SNKFF+QRGVGL QQNEKSQFPQ PA VTQGV GKPS AES NVQQQQ QQ A Q 
Sbjct: 181 NYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQT 240

Query: 241 SQTPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300
           SQT +QS+SNGQPNQLNR ATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL
Sbjct: 241 SQTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300

Query: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLK 360
           NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLK
Sbjct: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360

Query: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAES 420
           LCELSFQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAES
Sbjct: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAES 420

Query: 421 KREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGM 480
           KREEEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQS GLP QGRGRGRG+
Sbjct: 421 KREEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGI 480

Query: 481 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPT 540
           MWPPHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  
Sbjct: 481 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG-- 540

Query: 541 PRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRP 600
           PRFSGDFMGPP+AMMFRGRPSQP AMF P GFGMMMGQGRGPFMGGMGV G +PARPGRP
Sbjct: 541 PRFSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRP 600

Query: 601 VGVSPLYPPPAVPSSQNMNRTIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQY 660
           VGVSPLYPPPAVPS+QN+NR IKRDQRG T   NDRYIVG DQNKG E+ SSG DE MQY
Sbjct: 601 VGVSPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQY 660

Query: 661 KQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           KQGSKAY DEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAIS+Q
Sbjct: 661 KQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of CSPI05G30440 vs. NCBI nr
Match: XP_004141524.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN52613.1 hypothetical protein Csa_008573 [Cucumis sativus])

HSP 1 Score: 1411.7 bits (3653), Expect = 0.0e+00
Identity = 706/707 (99.86%), Postives = 706/707 (99.86%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS
Sbjct: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420
           FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420

Query: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480
           KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH
Sbjct: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480

Query: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540
           MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG
Sbjct: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540

Query: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP 600
           DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP
Sbjct: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS 660
           LYPPPAVPSSQNMNR IKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS
Sbjct: 601 LYPPPAVPSSQNMNRAIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAYS 660

Query: 661 DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 661 DEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 707

[Close]

BLAST of CSPI05G30440 vs. NCBI nr
Match: XP_008459517.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo])

HSP 1 Score: 1365.9 bits (3534), Expect = 0.0e+00
Identity = 681/708 (96.19%), Postives = 693/708 (97.88%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLP+INSDSSAPPAASAVSN LSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           P GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PPGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPP+EEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPA+ TQGVTGKPSAAES NVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           Q+LSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QNLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           +ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELS
Sbjct: 301 TADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREEE 420
           FQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAESKREEE
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEE 420

Query: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPPH 480
           KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQGRGRGRGMMWPP 
Sbjct: 421 KAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGMMWPPQ 480

Query: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFSG 540
           MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYGPTPRFS 
Sbjct: 481 MPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPTPRFSS 540

Query: 541 DFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGR-GPFMGGMGVAGANPARPGRPVGVS 600
           DFMGPPTAMMFRGRPSQP AMFPP GFGMMMGQGR GPFMGGMGV GANPARPGRPVGVS
Sbjct: 541 DFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTGANPARPGRPVGVS 600

Query: 601 PLYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQGSKAY 660
           PLYPPPAVPSSQNMNR IKRDQRGLTND+YIVG+DQNKG+EIQSSGRD+EMQYKQGSKAY
Sbjct: 601 PLYPPPAVPSSQNMNRAIKRDQRGLTNDKYIVGIDQNKGLEIQSSGRDDEMQYKQGSKAY 660

Query: 661 SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 661 SDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708

[Close]

BLAST of CSPI05G30440 vs. NCBI nr
Match: KAA0039343.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa])

HSP 1 Score: 1350.5 bits (3494), Expect = 0.0e+00
Identity = 678/721 (94.04%), Postives = 691/721 (95.84%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLP+INSDSSAPPAASAVSN LSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLINSDSSAPPAASAVSNSLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           P GAP GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PPGAPPGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPP+EEILQKIQHLGSYNYGPS
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGPS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           NKFFTQRGVGLSQQNEKSQFPQVPA+ TQGVTGKPSAAES NVQQQQGQQSAPQASQTPV
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQVPAITTQGVTGKPSAAESANVQQQQGQQSAPQASQTPV 240

Query: 241 QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           Q+LSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QNLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCELS 360
           +ADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCELS
Sbjct: 301 TADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMA------------ 420
           FQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMA            
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMARKKIKYEEMHFG 420

Query: 421 -VSVAAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQ 480
              ++AESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQ
Sbjct: 421 SSRMSAESKREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQ 480

Query: 481 GRGRGRGMMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPR 540
           GRGRGRGMMWPP MP+GRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PR
Sbjct: 481 GRGRGRGMMWPPQMPIGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPR 540

Query: 541 GFGPYGPTPRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGR-GPFMGGMGVAG 600
           GFGPYGPTPRFS DFMGPPTAMMFRGRPSQP AMFPP GFGMMMGQGR GPFMGGMGV G
Sbjct: 541 GFGPYGPTPRFSSDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGGPFMGGMGVTG 600

Query: 601 ANPARPGRPVGVSPLYPPPAVPSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGR 660
           ANPARPGRPVGVSPLYPPPAVPSSQNMNR IKRDQRGLTND+YIVG+DQNKG+EIQSSGR
Sbjct: 601 ANPARPGRPVGVSPLYPPPAVPSSQNMNRAIKRDQRGLTNDKYIVGIDQNKGLEIQSSGR 660

Query: 661 DEEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN 708
           D+EMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN
Sbjct: 661 DDEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISN 720

[Close]

BLAST of CSPI05G30440 vs. NCBI nr
Match: XP_038889902.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 1316.6 bits (3406), Expect = 0.0e+00
Identity = 665/711 (93.53%), Postives = 679/711 (95.50%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MEDSEGVLSFDFEGGLDAGPTNPAATSSLP+ +SDSSAPPAASAVSN LSGALGPAVSAE
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPLNHSDSSAPPAASAVSNSLSGALGPAVSAE 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           P GA  GNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  PPGASTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPP+EEILQKIQHLGSYNYG S
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGSS 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQG-VTGKPSAAESVNVQQQQGQQSAPQASQTP 240
           NKFFTQRGVGLSQQNEKSQFPQ   LVTQG VTGKPSAAES NV QQQGQQSA Q SQTP
Sbjct: 181 NKFFTQRGVGLSQQNEKSQFPQGQPLVTQGVVTGKPSAAESANVPQQQGQQSAQQTSQTP 240

Query: 241 VQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           +QSLSNGQPNQLNR ATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREE 420

Query: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPP 480
           EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQS GLPPQGRGRGRG++WPP
Sbjct: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIVWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRFS 540
           HMPMGRGARPF GMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  PRFS
Sbjct: 481 HMPMGRGARPFPGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG--PRFS 540

Query: 541 GDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGVS 600
           GDFMGPPTAMMFRGRPSQP AMFPP GFGMMMGQGRGPFMGGMG+AG NP+RPGRPVGVS
Sbjct: 541 GDFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGIAGTNPSRPGRPVGVS 600

Query: 601 PLYPPPAVPSSQNMNRTIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQYKQGS 660
           PLYPPPAVPSSQNMNR IKRDQRG     NDRYIVG+DQNKG+E+ SSGRD+EMQYKQGS
Sbjct: 601 PLYPPPAVPSSQNMNRAIKRDQRGPASERNDRYIVGLDQNKGLEMPSSGRDDEMQYKQGS 660

Query: 661 KAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           KAYSDEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ
Sbjct: 661 KAYSDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 709

[Close]

BLAST of CSPI05G30440 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 1256.5 bits (3250), Expect = 0.0e+00
Identity = 638/715 (89.23%), Postives = 658/715 (92.03%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAA-----TSSLPIINSDSSAPPAASAVSNPLSGALGP 60
           MEDSEGVLSFDFEGGLDA PTNPAA     +SSLP+I SDSSAPP    +SN L G+LGP
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPP---PLSNSLPGSLGP 60

Query: 61  AVSAEPTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120
            ++ EP GAP  NVG RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG
Sbjct: 61  TLAPEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYG 120

Query: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSY 180
           ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP +EEILQKIQHLGSY
Sbjct: 121 ECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSY 180

Query: 181 NYGPSNKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQA 240
           NYG SNKFF+QRGVGL QQNEKSQFPQ PA VTQGV GKPS AES NVQQQQ QQ A Q 
Sbjct: 181 NYGSSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQT 240

Query: 241 SQTPVQSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300
           SQT +QS+SNGQPNQLNR ATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL
Sbjct: 241 SQTQIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKL 300

Query: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLK 360
           NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGT HYGQNFSLKWLK
Sbjct: 301 NEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLK 360

Query: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAES 420
           LCELSFQKTRHLRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPDGELMAVS+AAES
Sbjct: 361 LCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAES 420

Query: 421 KREEEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGM 480
           KREEEKAKGVNPDIG+ENPDIVPFEDNEEEEEEESEEEEEESFGQS GLP QGRGRGRG+
Sbjct: 421 KREEEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGI 480

Query: 481 MWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPT 540
           MWPPHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGM PRGFGPYG  
Sbjct: 481 MWPPHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYG-- 540

Query: 541 PRFSGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRP 600
           PRFSGDFMGPP+AMMFRGRPSQP AMF P GFGMMMGQGRGPFMGGMGV G +PARPGRP
Sbjct: 541 PRFSGDFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRP 600

Query: 601 VGVSPLYPPPAVPSSQNMNRTIKRDQRGLT---NDRYIVGMDQNKGVEIQSSGRDEEMQY 660
           VGVSPLYPPPAVPS+QN+NR IKRDQRG T   NDRYIVG DQNKG E+ SSG DE MQY
Sbjct: 601 VGVSPLYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQY 660

Query: 661 KQGSKAYSDEQYGTGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 708
           KQGSKAY DEQYG GTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAIS+Q
Sbjct: 661 KQGSKAYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]

BLAST of CSPI05G30440 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 770.4 bits (1988), Expect = 1.3e-222
Identity = 444/702 (63.25%), Postives = 501/702 (71.37%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MED++G LSFDFEGGLD+GP     T+S+P+      APP      N  S A+  A + +
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYD 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
            + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQ
Sbjct: 61  HSSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPP+EE+LQKIQ L +YNYG +
Sbjct: 121 DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-T 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           N+ +  R V    Q+      QVP      + G+P   ES N+QQQQ QQ  PQ SQ  V
Sbjct: 181 NRLYQARNVAPQLQDRPQ--GQVP------MQGQPQ--ESGNLQQQQQQQ--PQQSQHQV 240

Query: 241 -QSLSNGQPNQLNRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
            Q+L     +Q NR +  LPQG++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 SQTLIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPHYGQNFSLKWLKLCEL 360
           DS +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGT  YG+NFS+KWLKLCEL
Sbjct: 301 DSVENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDGELMAVSVAAESKREE 420
           SF KTR+LRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPD ELMA+S+AAE+KREE
Sbjct: 361 SFHKTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREE 420

Query: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSAGLPPQGRGRGRGMMWPP 480
           EKAKGVNP+  +ENPDIVPFEDNEEEEEEE E EEEE   +S    PQGRGRGRG+MWPP
Sbjct: 421 EKAKGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMTPRGFGPYGPTPRF 540
            MP+GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYG  PRF
Sbjct: 481 QMPLGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYG--PRF 540

Query: 541 SGDFMGPPTAMMFRGRPSQPAAMFPPSGFGMMMGQGRGPFMGGMGVAGANPARPGRPVGV 600
            GDF GP   MMF GRP Q    FP  G+G MMG GRGP MGGMG A         P G 
Sbjct: 541 GGDFRGPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMGNA---------PRGG 600

Query: 601 SPLYPPPAV----PSSQNMNRTIKRDQRGLTNDRYIVGMDQNKGVEIQSSGRDEEMQYKQ 660
            P+Y PPA     P   N     + D+RG++ D+      QN+                 
Sbjct: 601 RPMYYPPATSSARPGPSNRKTPERSDERGVSGDQ------QNQ----------------- 631

Query: 661 GSKAYSDEQYGTGTTFRNEESES--EDEAPRRSRHGEGKKKR 695
              ++  EQ+  G + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 -DASHDMEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]

BLAST of CSPI05G30440 vs. TAIR 10
Match: AT1G30460.2 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 280.4 bits (716), Expect = 4.0e-75
Identity = 158/265 (59.62%), Postives = 185/265 (69.81%), Query Frame = 0


Query: 1   MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIINSDSSAPPAASAVSNPLSGALGPAVSAE 60
           MED++G LSFDFEGGLD+GP     T+S+P+      APP      N  S A+  A + +
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQ--NTASVPV------APP-----ENSSSAAVNVAPTYD 60

Query: 61  PTGAPHGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
            + A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQ
Sbjct: 61  HSSATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPS 180
           DCVYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPPP+EE+LQKIQ L +YNYG +
Sbjct: 121 DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-T 180

Query: 181 NKFFTQRGVGLSQQNEKSQFPQVPALVTQGVTGKPSAAESVNVQQQQGQQSAPQASQTPV 240
           N+ +  R V    Q+      QVP      + G+P   ES N+QQQQ QQ  PQ SQ  V
Sbjct: 181 NRLYQARNVAPQLQDRPQ--GQVP------MQGQPQ--ESGNLQQQQQQQ--PQQSQHQV 238

Query: 241 -QSLSNGQPNQLNRNATSLPQGISR 265
            Q+L     +Q NR +  LPQG++R
Sbjct: 241 SQTLIPNPADQTNRTSHPLPQGVNR 238

[Close]

BLAST of CSPI05G30440 vs. TAIR 10
Match: AT4G11970.1 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 248 PNQL---NRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 307
           P+QL     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 308 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPH-YGQNFSLKWLKLCELSFQK 367
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 368 TRHLRNPYNENLPVKISRDCQELEPSVGEQLASLL 399
           T HL+NP N+  PVKISRDCQEL   +GE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]

BLAST of CSPI05G30440 vs. TAIR 10
Match: AT4G11970.2 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 248 PNQL---NRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 307
           P+QL     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 308 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPH-YGQNFSLKWLKLCELSFQK 367
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 368 TRHLRNPYNENLPVKISRDCQELEPSVGEQLASLL 399
           T HL+NP N+  PVKISRDCQEL   +GE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]

BLAST of CSPI05G30440 vs. TAIR 10
Match: AT4G11970.3 (YTH family protein )

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-32
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 248 PNQL---NRNATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 307
           P+QL     N  S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 308 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTPH-YGQNFSLKWLKLCELSFQK 367
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 368 TRHLRNPYNENLPVKISRDCQELEPSVGEQLASLL 399
           T HL+NP N+  PVKISRDCQEL   +GE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

The following BLAST results are available for this feature:

BLAST of CSPI05G30440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LNK9	1.8e-221	63.25	30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian...	[more]
Q0DA50	9.2e-202	57.85	Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX...	[more]
Q5R746	5.1e-27	44.05	3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2	[more]
Q9H6S0	1.1e-26	44.05	3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2	[more]
B2RR83	1.3e-25	40.96	3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1	[more]

BLAST of CSPI05G30440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSR6	0.0e+00	99.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647360 PE=4 SV=1	[more]
A0A1S3CAV8	0.0e+00	96.19	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo O...	[more]
A0A5A7T8Q5	0.0e+00	94.04	30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucumis melo v...	[more]
A0A5D3C2W1	0.0e+00	89.23	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m...	[more]
A0A1S3BC28	0.0e+00	89.23	30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365...	[more]

BLAST of CSPI05G30440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141524.1	0.0e+00	99.86	30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis sativus] >KGN...	[more]
XP_008459517.1	0.0e+00	96.19	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucum...	[more]
KAA0039343.1	0.0e+00	94.04	30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var...	[more]
XP_038889902.1	0.0e+00	93.53	30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid...	[more]
XP_008445183.1	0.0e+00	89.23	PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me...	[more]

BLAST of CSPI05G30440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30460.1	1.3e-222	63.25	cleavage and polyadenylation specificity factor 30	[more]
AT1G30460.2	4.0e-75	59.62	cleavage and polyadenylation specificity factor 30	[more]
AT4G11970.1	2.4e-32	49.03	YTH family protein	[more]
AT4G11970.2	2.4e-32	49.03	YTH family protein	[more]
AT4G11970.3	2.4e-32	49.03	YTH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 436..456
None	No IPR available	GENE3D	3.10.590.10	ph1033 like domains	coord: 241..401 e-value: 1.7E-53 score: 182.4
None	No IPR available	GENE3D	4.10.1000.10		coord: 66..132 e-value: 1.2E-15 score: 59.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 656..671
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..426
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 672..699
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..458
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 412..494
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 641..655
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 605..707
None	No IPR available	PANTHER	PTHR12357:SF106	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45	coord: 1..705
None	No IPR available	PANTHER	PTHR12357	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	coord: 1..705
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 74..100 e-value: 3.5E-4 score: 29.9 coord: 130..154 e-value: 0.052 score: 22.7 coord: 102..128 e-value: 0.051 score: 22.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 128..155 score: 12.089031
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 74..101 score: 12.83077
IPR007275	YTH domain	PFAM	PF04146	YTH	coord: 263..326 e-value: 1.1E-26 score: 94.1 coord: 342..397 e-value: 2.5E-18 score: 66.9
IPR007275	YTH domain	PROSITE	PS50882	YTH	coord: 263..398 score: 58.633511
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 74..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G30440.1	CSPI05G30440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:1990247	N6-methyladenosine-containing RNA binding
molecular_function	GO:0003723	RNA binding