CSPI05G28990 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G28990
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 27354291 .. 27355162 (+)
RNA-Seq ExpressionCSPI05G28990
SyntenyCSPI05G28990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGTACTCAAACTTCTTCTTCTATTTATTTTCTAATCCTTTTTTCATGTATATTTCTATATATATATATTCGTCTCCTGAGCTCACATCGTTTATTTTTAATTTTTTTTCTCAAGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGTGTGATTTTCTTTTTGAACAGTTGATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATGATAATAATTTGATTATTGTGTTAACTTAGCAGGGAATTGATGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTAATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAGGGGACCCATTTCTTCCCTGCTCAAAGTTATTAAATACAAAAATTCAAAACTACTTGTTTAGAAAATGAACTAAAATATTTATGAAATTTAGAAGGGTG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTGTCTCAAAGTAACAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGATGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAATTAATTTGTAATAGTTTTTCTTTTCTTTTTCTAATAAAAAGACCACAGCTAATAATATTGTTTAATTTCTGTGAGGTTTTTCATATCTAAGATATATTATGAATATTATTTTTCTTTTAACTAATTTATTCCAAGTGTAATTCATGCATGGTGGTGAGATAAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTCCCTTGTATGTTAAGAAAAATAATAATGGGAGGGGACCCATTTCTTCCCTGCTCAAAGTTATTAAATACAAAAATTCAAAACTACTTGTTTAGAAAATGAACTAAAATATTTATGAAATTTAGAAGGGTG

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTCTTTCTTTCACTCATGGATTAAAAGTGGAAATGATTGAATCTTTGGGACATGGAAGCAATGTTAGAATTAGTCCATCACTCAAGGGAATTGATGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATACTAATACAAGAAGTGGGTATCTTAATCCTCCTCCTCCTCCTTCACCAGCTACTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPGPNTNTRSGYLNPPPPPSPAT*
Homology
BLAST of CSPI05G28990 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.2e-39
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGI GKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 87
          DYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of CSPI05G28990 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-16
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 29 MIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPGPNTNTR-SGYLNPPPPPS 84
          MIESLGHGSNVR S SLKGI GKSRKMMIEIMDYADPGPN NTR SGYL PPPPP+
Sbjct: 1  MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of CSPI05G28990 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPG 66
          F   L++SC L L F+HG   +++E+  HG +  +  S +   GKSRK MI +MDYADP 
Sbjct: 6  FLRFLIVSCLLALCFSHGFGRKLVETAEHGEDSSVLVSREN-HGKSRK-MITMMDYADPE 65

Query: 67 PNTNTRSGYLNPPPP 82
          PN N R+GY+  PPP
Sbjct: 66 PNVNPRTGYIFTPPP 78

BLAST of CSPI05G28990 vs. ExPASy TrEMBL
Match: A0A540L840 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPG 66
          F   L++SC L L F+HGL  +++E+  HG +  +  S +   GKSRKM   +MDYADP 
Sbjct: 6  FLRFLIVSCLLALCFSHGLGRKLVETAEHGDDSSVLVSREN-HGKSRKMN-TMMDYADPE 65

Query: 67 PNTNTRSGYLNPPPP 82
          PN N R+GY+  PPP
Sbjct: 66 PNVNPRTGYIFTPPP 78

BLAST of CSPI05G28990 vs. ExPASy TrEMBL
Match: A0A540M3Y6 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021117 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 7  FSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPG 66
          F   L++SC L L F+HG   +++E+  HG +  +  S +   GKSRKM   +MDYADP 
Sbjct: 6  FLRFLIVSCLLALCFSHGFGRKLVETAEHGDDSSVLVSREN-HGKSRKMN-TMMDYADPE 65

Query: 67 PNTNTRSGYLNPPPP 82
          PN N R+GY+  PPP
Sbjct: 66 PNVNPRTGYIFTPPP 78

BLAST of CSPI05G28990 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGI GKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 87
          DYADPGPNTNTRSGYLNPPPPPSPAT
Sbjct: 61 DYADPGPNTNTRSGYLNPPPPPSPAT 86

BLAST of CSPI05G28990 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 29 MIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYADPGPNTNTR-SGYLNPPPPPS 84
          MIESLGHGSNVR S SLKGI GKSRKMMIEIMDYADPGPN NTR SGYL PPPPP+
Sbjct: 1  MIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPA 55

BLAST of CSPI05G28990 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-09
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 4  PKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYA 63
          PK+F  LLLL  F++  F  G     +E+  H +   IS S K   GK RK+M+E+MDYA
Sbjct: 2  PKIFPILLLL--FIIFGFGVG----AMEAAAH-AGCDISSSQKKSGGKPRKVMMEVMDYA 61

Query: 64 DPGPNTNTRSGYLNPP--PPPSPAT 87
          DPGPNTNTRSGYL PP  PPP P++
Sbjct: 62 DPGPNTNTRSGYLTPPSSPPPPPSS 79

BLAST of CSPI05G28990 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIM 60
          M HPK+F  LLLL  F++L F  G     +E+  H      S S K   GK RK+M+E+M
Sbjct: 1  MDHPKIFPILLLL--FIILGFGVG----AMEAAAH-PGYDTSSSQKKSGGKPRKVMMEVM 60

Query: 61 DYADPGPNTNTRSGYLNPP-PPPSP 85
          DYADPGPNTNTRSGYL PP  PP P
Sbjct: 61 DYADPGPNTNTRSGYLTPPSSPPLP 78

BLAST of CSPI05G28990 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 4  PKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIDGKSRKMMIEIMDYA 63
          PK+F  LLLL  F++  F  G     +E+  H +   IS S K   GK RK+M+E+MDYA
Sbjct: 2  PKIFPILLLL--FIIFGFGVG----AMEAAAH-AGCDISSSQKS-GGKPRKVMMEVMDYA 61

Query: 64 DPGPNTNTRSGYLNPP--PPPSPAT 87
          DPGPNTNTRSGYL PP  PPP P++
Sbjct: 62 DPGPNTNTRSGYLTPPSSPPPPPSS 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSB78.2e-3998.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT59.8e-1687.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A498HG626.4e-0746.67Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1[more]
A0A540L8401.1e-0646.67Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1[more]
A0A540M3Y63.2e-0645.33Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021117 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN52468.11.7e-3898.84hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.12.0e-1587.50hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
XP_023527249.12.8e-0952.94uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6602500.11.1e-0854.12hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527257.12.4e-0852.94uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..86
NoneNo IPR availablePANTHERPTHR37908:SF3TRANSMEMBRANE PROTEINcoord: 5..84
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 5..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G28990.1CSPI05G28990.1mRNA