CSPI05G27630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G27630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	Chr5: 26082163 .. 26084199 (+)
RNA-Seq Expression	CSPI05G27630
Synteny	CSPI05G27630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGGTAAATCTCTCTCTAAATCTCTTTTTCCATTCTTCCATTTTTGTTTTCTTGTGCTTCTCAACGAATTCCGAATCATGAGCAGAAATTAATGGGATATCTGTTTACTCTGTTTCTTTCTGTTTAATGATTTGGTTACTTGTTTCTACGTGTATAAATTTGTAAAATTTTTATGAGTAGTTTTTATTTTAGTTCTCTTTGAAGATCTTGCAGCAAATTTAACGAAACATGTTCATTAGGTATGTTGTTCGAAAACTTACCATCCTTTCATGTTATAACTCTGTTTTTCTCCTCTTTCTCTCTCTCCTTTCTCCAACAAGGAGGGAGTGACTTATATATAAAAGTAGAATTTAGGACCGTTTGTAAATGGCATTTCGAGTGCTTAAAAGATAAGTTTTTGTTTTTTTAAGTGTTTGTGTTTAGTAAGGAGCTTAAGTATTTAAAAAGGGGTTCAAGTGTTTAGAAAGCCATTCCAAACAGGCTTTGTGCTGTTAAAACATGCACATCTATATGTATTCTAACTGTGTTTTTTTAGCAACAAGATCATTTTCTAAACCCATCTCTTGGAATTCTCCTCACTTTGAAACCAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAGACATTCCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTTGACTACTTGAAAAAATATGATATCTTTGCTAGATTTCAGAGGTCTGTTATGTTATCTGTAAGTTTCATATAGTTGTTATCATGGTGGTAATGCAATGAATCTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGAATTTTCTGTTCTAGCCTTAAGCTGGGTTTAGTGTAAGATTTATCAAGTTCAAAGATAGTTGGATATTGATCTTCTGTATATTGCTTAGAAGATGTGTAACTTTCATCTATCCAAATATCTGCTGAAACAAGAGTTAGCTTGTCTTATTTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTCAGTCTCTTCTTTTACTGTCTATCTCAAAGAGTTTTACGAAACAAATGAAATCGTTCATCTGAGTAAGTTCTTGCGAAATTCCACGATGGTGAAACAGGCAAAATGTATGTAATGCTTCCTCTTTCTACATTACTGTCATTTGTCTTCATCTTTGAACATTTTCAGTGATTTGGATCGTCTCCAATTATGAGATGGGTTTCATTGAATGGAAGTCATTTATTTGATTGAGACGAATTTGATGGTGAATATGTAGGGAGAACCAGATATAAGTAAAGTCGGGACCCCACATGACACGAACAATATAAGCAGAAGATGAAAGTTAGTGAAGCGTAGTTCCATTCTCATCACATTTTTAGCAAAAAAGAAAGCCAGAGAGCAATGGAGATGAACACTAAAAACTGGAAAGTGGGAAGGAAAGAGCAAAGCAGTGTAAGAATTACCAAAACTTGAGAAGAGTTAAAAGAGAAAAAGAAGCATTGATGATTGATGGAGAAGAGAAAAGGATGAATATGAAAACAGTACCAATTGAGACTCAGTTGTTAAAGGAGAGGGATTTTCTTCTTCCCAGATGACATTAAGAAAAAGGTATGCATTAAAAGGGATGAACAAAATGAATAGGTGAGACCAATAACCCCC

mRNA sequence

ATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAGACATTCCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTTGACTACTTGAAAAAATATGATATCTTTGCTAGATTTCAGAGGTCTGTTATGTTATCTGTAAGTTTCATATAGTTGTTATCATGGTGGTAATGCAATGAATCTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGAATTTTCTGTTCTAGCCTTAAGCTGGGTTTAGTGTAAGATTTATCAAGTTCAAAGATAGTTGGATATTGATCTTCTGTATATTGCTTAGAAGATGTGTAACTTTCATCTATCCAAATATCTGCTGAAACAAGAGTTAGCTTGTCTTATTTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTCAGTCTCTTCTTTTACTGTCTATCTCAAAGAGTTTTACGAAACAAATGAAATCGTTCATCTGAGTAAGTTCTTGCGAAATTCCACGATGGTGAAACAGGCAAAATGGAGAACCAGATATAAGTAAAGTCGGGACCCCACATGACACGAACAATATAAGCAGAAGATGAAAGTTAGTGAAGCGTAGTTCCATTCTCATCACATTTTTAGCAAAAAAGAAAGCCAGAGAGCAATGGAGATGAACACTAAAAACTGGAAAGTGGGAAGGAAAGAGCAAAGCAGTGTAAGAATTACCAAAACTTGAGAAGAGTTAAAAGAGAAAAAGAAGCATTGATGATTGATGGAGAAGAGAAAAGGATGAATATGAAAACAGTACCAATTGAGACTCAGTTGTTAAAGGAGAGGGATTTTCTTCTTCCCAGATGACATTAAGAAAAAGGTATGCATTAAAAGGGATGAACAAAATGAATAGGTGAGACCAATAACCCCC

Coding sequence (CDS)

ATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG

Protein sequence

MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE*

Homology

[Close]

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-25
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 11  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 70
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 163 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 222

Query: 71  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 130
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 223 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 282

Query: 131 HL-DSGNHH 137
           HL  S N+H
Sbjct: 283 HLGGSANNH 291

[Close]

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 20  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVF 79
           SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG + APAVF
Sbjct: 85  SSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKIEAPAVF 144

Query: 80  RCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 127
           +  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 145 KRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-10
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 69  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 128
           LP  + +PAVFRC RV++I   + E AYQ  V+IGGHVFKG LYDQG    +   S S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 129 HLDSGNHH 137
              S  HH
Sbjct: 283 GETSHQHH 290

[Close]

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 58  SSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGE--LAYQATVNIGGHVFKGFLYDQG 117
           +S+      + LP  V +PA+FRC RV++I   E +   AYQ  VNIGGH+FKG LYDQG
Sbjct: 223 NSNSGLEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQG 282

Query: 118 ADDKN 121
            + ++
Sbjct: 283 PEHQD 287

[Close]

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-09
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 70  PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 120
           P  VR  AVF+C ++++I   E +LAYQA V+IGGHVFKG LYDQG + +
Sbjct: 226 PSKVRTSAVFQCIQMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHESQ 275

[Close]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN
Sbjct: 226 QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 285

Query: 121 AFPSISHLHLDSGNHHRE 139
           AFPSISHLHLDSGNHHRE
Sbjct: 286 AFPSISHLHLDSGNHHRE 303

[Close]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN
Sbjct: 226 QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 285

Query: 121 AFPSISHLHLDSGNHHRE 139
           AFPSISHLHLDSGNHHRE
Sbjct: 286 AFPSISHLHLDSGNHHRE 303

[Close]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL
Match: A0A5D3CCT8 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003120 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.1e-64
Identity = 138/154 (89.61%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  Q----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 120
           Q                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG
Sbjct: 226 QDQFLNPPLGILMTLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 285

Query: 121 HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE 139
           HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Sbjct: 286 HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE 319

[Close]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL
Match: A0A6J1CEG6 (protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFE 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAA     ASTSNATTPRSFE
Sbjct: 167 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFE 226

Query: 61  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG 120
           T+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
Sbjct: 227 TSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG 286

Query: 121 ADDKNAFPSISHLHLDSGNHHRE 139
            DDKN FPS+SHLHL+SGNHH +
Sbjct: 287 IDDKNGFPSVSHLHLESGNHHHK 309

[Close]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL
Match: A0A6J1GXY1 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458506 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVAT+    GSSGSSSAGAKRP+VLIPSQ+ AAAAAASTSNATTPRSFETTSSH
Sbjct: 162 MLVVMDGVATS----GSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTSSH 221

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPG V+APAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KN
Sbjct: 222 QDASFKKSLPGQVQAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKN 281

Query: 121 AFPSISHLHLDSGNHHRE 139
           A PSISHLHL+SGNH R+
Sbjct: 282 ALPSISHLHLESGNHLRD 295

[Close]

BLAST of CSPI05G27630 vs. NCBI nr
Match: XP_004142483.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_008495 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 4.8e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN
Sbjct: 226 QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 285

Query: 121 AFPSISHLHLDSGNHHRE 139
           AFPSISHLHLDSGNHHRE
Sbjct: 286 AFPSISHLHLDSGNHHRE 303

[Close]

BLAST of CSPI05G27630 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 4.8e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN
Sbjct: 226 QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 285

Query: 121 AFPSISHLHLDSGNHHRE 139
           AFPSISHLHLDSGNHHRE
Sbjct: 286 AFPSISHLHLDSGNHHRE 303

[Close]

BLAST of CSPI05G27630 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 6.9e-66
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAAASTSNATTPRSFETTSSH
Sbjct: 165 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAASTSNATTPRSFETTSSH 224

Query: 61  QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 120
           QDASFKKSLPGHVRAPAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDKN
Sbjct: 225 QDASFKKSLPGHVRAPAVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 284

Query: 121 AFPSISHLHLDSGNHHRE 139
           AFPSISHLHLDSGNHHR+
Sbjct: 285 AFPSISHLHLDSGNHHRD 302

[Close]

BLAST of CSPI05G27630 vs. NCBI nr
Match: KAA0034761.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.4e-64
Identity = 138/154 (89.61%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH
Sbjct: 166 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSH 225

Query: 61  Q----------------DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 120
           Q                DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG
Sbjct: 226 QDQFLNPPLGILMTLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 285

Query: 121 HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE 139
           HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE
Sbjct: 286 HVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE 319

[Close]

BLAST of CSPI05G27630 vs. NCBI nr
Match: XP_022138928.1 (protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-60
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFE 60
           MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS AAAAA     ASTSNATTPRSFE
Sbjct: 167 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFE 226

Query: 61  TTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG 120
           T+S+HQDASFKKSLPG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
Sbjct: 227 TSSNHQDASFKKSLPGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG 286

Query: 121 ADDKNAFPSISHLHLDSGNHHRE 139
            DDKN FPS+SHLHL+SGNHH +
Sbjct: 287 IDDKNGFPSVSHLHLESGNHHHK 309

[Close]

BLAST of CSPI05G27630 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 11  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 70
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 163 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 222

Query: 71  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 130
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 223 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 282

Query: 131 HL-DSGNHH 137
           HL  S N+H
Sbjct: 283 HLGGSANNH 291

[Close]

BLAST of CSPI05G27630 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 11  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 70
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 163 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 222

Query: 71  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 130
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 223 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 282

Query: 131 HL-DSGNHH 137
           HL  S N+H
Sbjct: 283 HLGGSANNH 291

[Close]

BLAST of CSPI05G27630 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 11  ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 70
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 250 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 309

Query: 71  LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 130
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 310 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 369

Query: 131 HL-DSGNHH 137
           HL  S N+H
Sbjct: 370 HLGGSANNH 378

[Close]

BLAST of CSPI05G27630 vs. TAIR 10
Match: AT3G54430.1 (SHI-related sequence 6 )

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-15
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 20  SSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVF 79
           SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG + APAVF
Sbjct: 85  SSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKIEAPAVF 144

Query: 80  RCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 127
           +  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 145 KRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of CSPI05G27630 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-10
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 10  TASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSL 69
           + SG GG SGS  AG       IP +        ++S++  P S        +ASF    
Sbjct: 145 STSGGGGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLP-SHSAGLEMGEASF---- 204

Query: 70  PGHVRAPAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 118
           PG V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 205 PGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

The following BLAST results are available for this feature:

BLAST of CSPI05G27630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	2.7e-25	53.49	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
Q9M2U4	8.3e-14	42.59	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
Q9FXH7	3.3e-10	50.00	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]
Q9LQZ5	1.6e-09	46.15	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
K4B6C9	2.1e-09	56.00	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]

BLAST of CSPI05G27630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX6	2.3e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1	[more]
A0A1S3BFS5	2.3e-67	100.00	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S...	[more]
A0A5D3CCT8	3.1e-64	89.61	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1CEG6	1.2e-60	89.51	protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988...	[more]
A0A6J1GXY1	6.9e-56	87.68	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of CSPI05G27630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142483.1	4.8e-67	100.00	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical pro...	[more]
XP_008446964.1	4.8e-67	100.00	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
XP_038892899.1	6.9e-66	97.83	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]
KAA0034761.1	6.4e-64	89.61	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein...	[more]
XP_022138928.1	2.5e-60	89.51	protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]	[more]

BLAST of CSPI05G27630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	1.9e-26	53.49	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	1.9e-26	53.49	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	1.9e-26	53.49	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	5.9e-15	42.59	SHI-related sequence 6	[more]
AT4G36260.1	4.4e-10	40.37	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 69..115 e-value: 8.4E-27 score: 90.8
None	No IPR available	PFAM	PF05142	DUF702	coord: 16..117 e-value: 3.5E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..65
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 10..135
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 10..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G27630.1	CSPI05G27630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding