CSPI05G26390 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G26390
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 25241180 .. 25241504 (-)
RNA-Seq ExpressionCSPI05G26390
SyntenyCSPI05G26390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCATTAGGTGATCGAGAACGTCGATCGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACATCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTGAATTTTCCGGAGCGATTACGATCACAGCAAGAGAAGAAATGGAGAGAAAATGCATGAAAAAGGAAATCAAAGATATACTTAAGGAATTCAAATTGAAAAAGAATCTCTATGTATGAGGCCAGAGGGTTCCCCTATGGACTAAACTTGGGCGGGAAACTGACGAAGAAGAAAGAGCACGGAAAATGTAATTCAG

mRNA sequence

ATGAAGGCATTAGGTGATCGAGAACGTCGATCGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACATCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTGAATTTTCCGGAGCGATTACGATCACAGCAAGAGAAGAAATGGAGAGAAAATGCATGAAAAAGGAAATCAAAGATATACTTAAGGAATTCAAATTGAAAAAGAATCTCTATGTATGAGGCCAGAGGGTTCCCCTATGGACTAAACTTGGGCGGGAAACTGACGAAGAAGAAAGAGCACGGAAAATGTAATTCAG

Coding sequence (CDS)

ATGAAGGCATTAGGTGATCGAGAACGTCGATCGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACATCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTGAATTTTCCGGAGCGATTACGATCACAGCAAGAGAAGAAATGGAGAGAAAATGCATGA

Protein sequence

MKALGDRERRSHTKSKEIRISESESERTSKLIEGRNLARLMETVNFPERLRSQQEKKWRENA*
Homology
[Close]
BLAST of CSPI05G26390 vs. ExPASy TrEMBL
Match: A0A0A0KRD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615185 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.5e-21
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MKALGDRERRSHTKSKEIRISESESERTSKLIEGRNLARLMETVNFPERLRSQQEKKWRE 60
          MKALGDRERR HTKSKEIRISESESERT KLIEGRNLARLMETVNFPERLRSQ EKKWRE
Sbjct: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60

Query: 61 NA 63
          NA
Sbjct: 61 NA 62

[Close]
BLAST of CSPI05G26390 vs. NCBI nr
Match: KAE8645954.1 (hypothetical protein Csa_018217 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 5.2e-21
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 1  MKALGDRERRSHTKSKEIRISESESERTSKLIEGRNLARLMETVNFPERLRSQQEKKWRE 60
          MKALGDRERR HTKSKEIRISESESERT KLIEGRNLARLMETVNFPERLRSQ EKKWRE
Sbjct: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60

Query: 61 NA 63
          NA
Sbjct: 61 NA 62

The following BLAST results are available for this feature:
BLAST of CSPI05G26390 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G26390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRD62.5e-2195.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615185 PE=4 SV=1[more]
BLAST of CSPI05G26390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645954.15.2e-2195.16hypothetical protein Csa_018217 [Cucumis sativus][more]
BLAST of CSPI05G26390 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26390.1CSPI05G26390.1mRNA