CSPI05G26080 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G26080
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear pore complex protein NUP1 isoform X1
LocationChr5: 25090441 .. 25090973 (+)
RNA-Seq ExpressionCSPI05G26080
SyntenyCSPI05G26080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACTGCGAGGCAACAGAAAAACCTTGAAGAAGAAGATGAAGAAGGGTTGGGAAGGGTTAGGAAGTTAGTAGATGAAAGATTCGTTAAGAAATCACCGCCGAAACCTTATGATCGGCCGCCAGATGGCATAAGAACGTCTGGAAACAATTCGTGGATCTTGAAGCTCGTTGATCCAGGTCAAAGGCTCATTTCCTCCGTGATCCGAAAATTTCCTCACCATTTAACGTCTCGTGTTTCGTCTCAAGGTTTGTTATGTTAAAACTTGTGTATGATTTTCCTTATGGCTCTGTAGTGGATCATTCACAGACGTTACTACTGGAGTTCGTTTTTCTGATCATCCATCTAAGAATACTTACGTACTATATTTAAGACTGTTTTTCTTTTACGAACTTTATTAGATAAGTAGCATCTGATTTTGTTATTTCCAAGAGTAATCTGCTCGTTTATTATTATTTTTTCTTTCATGCATCAGAATCAAGCCAGTCAAGAAAGGATGACAACAAGGTCGATGTAACAGTAAGTAGATGA

mRNA sequence

ATGGTGACTGCGAGGCAACAGAAAAACCTTGAAGAAGAAGATGAAGAAGGGTTGGGAAGGGTTAGGAAGTTAGTAGATGAAAGATTCGTTAAGAAATCACCGCCGAAACCTTATGATCGGCCGCCAGATGGCATAAGAACGTCTGGAAACAATTCGTGGATCTTGAAGCTCGTTGATCCAGGTCAAAGGCTCATTTCCTCCGTGATCCGAAAATTTCCTCACCATTTAACGTCTCGTGTTTCGTCTCAAGAATCAAGCCAGTCAAGAAAGGATGACAACAAGGTCGATGTAACAGTAAGTAGATGA

Coding sequence (CDS)

ATGGTGACTGCGAGGCAACAGAAAAACCTTGAAGAAGAAGATGAAGAAGGGTTGGGAAGGGTTAGGAAGTTAGTAGATGAAAGATTCGTTAAGAAATCACCGCCGAAACCTTATGATCGGCCGCCAGATGGCATAAGAACGTCTGGAAACAATTCGTGGATCTTGAAGCTCGTTGATCCAGGTCAAAGGCTCATTTCCTCCGTGATCCGAAAATTTCCTCACCATTTAACGTCTCGTGTTTCGTCTCAAGAATCAAGCCAGTCAAGAAAGGATGACAACAAGGTCGATGTAACAGTAAGTAGATGA

Protein sequence

MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDPGQRLISSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVTVSR*
Homology
BLAST of CSPI05G26080 vs. ExPASy TrEMBL
Match: A0A0A0KRB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613430 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.2e-46
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 0

Query: 1   MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60
           MVTARQQKNLEEEDEEGLGRVRKL+DERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP
Sbjct: 1   MVTARQQKNLEEEDEEGLGRVRKLIDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60

Query: 61  GQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVTVSR 102
           GQRLI        SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVTVSR
Sbjct: 61  GQRLISSGSRMLFSSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVTVSR 109

BLAST of CSPI05G26080 vs. ExPASy TrEMBL
Match: A0A1S3BFS9 (nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489364 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MVTARQQKN---LEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKL 60
           MVTARQQKN    EE++EE LG V K +DERFVKKSP KPYDRPP+GIRT+GNNSWILKL
Sbjct: 1   MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61  VDPGQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           VDP QRLI        SSVIR FP HLTSRVSSQESSQSRKDD K DVT
Sbjct: 61  VDPAQRLISSGSRMLFSSVIRNFPTHLTSRVSSQESSQSRKDDKKADVT 109

BLAST of CSPI05G26080 vs. ExPASy TrEMBL
Match: A0A5D3CFP1 (Nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001780 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MVTARQQKN---LEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKL 60
           MVTARQQKN    EE++EE LG V K +DERFVKKSP KPYDRPP+GIRT+GNNSWILKL
Sbjct: 1   MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61  VDPGQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           VDP QRLI        SSVIR FP HLTSRVSSQESSQSRKDD K DVT
Sbjct: 61  VDPAQRLISSGSRMLFSSVIRNFPTHLTSRVSSQESSQSRKDDKKADVT 109

BLAST of CSPI05G26080 vs. ExPASy TrEMBL
Match: A0A5A7SZK9 (Nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G006520 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.1e-33
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MVTARQQKN---LEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKL 60
           MVTARQQKN    EE++EE LG V K +DERFVKKSP KPYDRPP+GIRT+GNNSWILKL
Sbjct: 1   MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61  VDPGQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           VDP QRLI        SSVIR FP HLTSRVSSQESSQSRKDD K DVT
Sbjct: 61  VDPAQRLISSGSRMLFSSVIRNFPTHLTSRVSSQESSQSRKDDKKADVT 109

BLAST of CSPI05G26080 vs. ExPASy TrEMBL
Match: A0A6J1GZB0 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 67/108 (62.04%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60
           M TAR++K+ E   EEGL    K  D+RF +K P KPYDRPP  +RTSGNNSWILKLVDP
Sbjct: 1   MATARERKSRE---EEGLRTAGKFADKRFFRKPPKKPYDRPPTTLRTSGNNSWILKLVDP 60

Query: 61  GQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVTVS 101
            QRLI        SSV R FPH L SR SS ESSQSR+DD K DVTV+
Sbjct: 61  AQRLISSGSQMLFSSVFRNFPHRLPSRTSSPESSQSRRDDKKADVTVA 105

BLAST of CSPI05G26080 vs. NCBI nr
Match: XP_011656263.1 (nuclear pore complex protein NUP1 [Cucumis sativus] >XP_031741373.1 nuclear pore complex protein NUP1 [Cucumis sativus] >KAE8648811.1 hypothetical protein Csa_009344 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44
Identity = 97/106 (91.51%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60
           MVTARQQKNLEEEDEEGLGRVRKL+DERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP
Sbjct: 1   MVTARQQKNLEEEDEEGLGRVRKLIDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60

Query: 61  GQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           GQRLI        SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT
Sbjct: 61  GQRLISSGSRMLFSSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 106

BLAST of CSPI05G26080 vs. NCBI nr
Match: XP_008446727.1 (PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo] >XP_008446728.1 PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo] >KAA0034635.1 nuclear pore complex protein NUP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MVTARQQKN---LEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKL 60
           MVTARQQKN    EE++EE LG V K +DERFVKKSP KPYDRPP+GIRT+GNNSWILKL
Sbjct: 1   MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61  VDPGQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           VDP QRLI        SSVIR FP HLTSRVSSQESSQSRKDD K DVT
Sbjct: 61  VDPAQRLISSGSRMLFSSVIRNFPTHLTSRVSSQESSQSRKDDKKADVT 109

BLAST of CSPI05G26080 vs. NCBI nr
Match: TYK09186.1 (nuclear pore complex protein NUP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 0

Query: 1   MVTARQQKN---LEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKL 60
           MVTARQQKN    EE++EE LG V K +DERFVKKSP KPYDRPP+GIRT+GNNSWILKL
Sbjct: 1   MVTARQQKNPEEKEEDEEERLGTVGKFIDERFVKKSPAKPYDRPPNGIRTTGNNSWILKL 60

Query: 61  VDPGQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDVT 99
           VDP QRLI        SSVIR FP HLTSRVSSQESSQSRKDD K DVT
Sbjct: 61  VDPAQRLISSGSRMLFSSVIRNFPTHLTSRVSSQESSQSRKDDKKADVT 109

BLAST of CSPI05G26080 vs. NCBI nr
Match: XP_038893389.1 (nuclear pore complex protein NUP1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 8.7e-26
Identity = 72/105 (68.57%), Postives = 78/105 (74.29%), Query Frame = 0

Query: 1   MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60
           M TAR+QK+  E  +EGL  V K  DERFV+K P KPYDRP   +RTSGNNSWILKLVDP
Sbjct: 1   MATAREQKSPVE--KEGLETVGKFRDERFVRKPPVKPYDRPLTTLRTSGNNSWILKLVDP 60

Query: 61  GQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDV 98
            QRLI        SSVIR FPHHLTSRVSSQESSQSRKDD K +V
Sbjct: 61  AQRLISSGSRMLFSSVIRNFPHHLTSRVSSQESSQSRKDDKKANV 103

BLAST of CSPI05G26080 vs. NCBI nr
Match: XP_038893390.1 (nuclear pore complex protein NUP1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 8.7e-26
Identity = 72/105 (68.57%), Postives = 78/105 (74.29%), Query Frame = 0

Query: 1   MVTARQQKNLEEEDEEGLGRVRKLVDERFVKKSPPKPYDRPPDGIRTSGNNSWILKLVDP 60
           M TAR+QK+  E  +EGL  V K  DERFV+K P KPYDRP   +RTSGNNSWILKLVDP
Sbjct: 1   MATAREQKSPVE--KEGLETVGKFRDERFVRKPPVKPYDRPLTTLRTSGNNSWILKLVDP 60

Query: 61  GQRLI--------SSVIRKFPHHLTSRVSSQESSQSRKDDNKVDV 98
            QRLI        SSVIR FPHHLTSRVSSQESSQSRKDD K +V
Sbjct: 61  AQRLISSGSRMLFSSVIRNFPHHLTSRVSSQESSQSRKDDKKANV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KRB26.2e-4691.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613430 PE=4 SV=1[more]
A0A1S3BFS96.1e-3375.23nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A5D3CFP16.1e-3375.23Nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5A7SZK96.1e-3375.23Nuclear pore complex protein NUP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1GZB01.4e-2462.04nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 ... [more]
Match NameE-valueIdentityDescription
XP_011656263.14.1e-4491.51nuclear pore complex protein NUP1 [Cucumis sativus] >XP_031741373.1 nuclear pore... [more]
XP_008446727.11.3e-3275.23PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Cucumis melo] >XP_00844... [more]
TYK09186.11.3e-3275.23nuclear pore complex protein NUP1 isoform X1 [Cucumis melo var. makuwa][more]
XP_038893389.18.7e-2668.57nuclear pore complex protein NUP1-like isoform X1 [Benincasa hispida][more]
XP_038893390.18.7e-2668.57nuclear pore complex protein NUP1-like isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G26080.1CSPI05G26080.1mRNA