CSPI05G24510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G24510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 24101746 .. 24103317 (+)
RNA-Seq ExpressionCSPI05G24510
SyntenyCSPI05G24510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTGTTCGAATCGCAAAGCCCATAGCCAGAGAGTGGGTCGGCATCTAACCAGGGTTAGTTATTTTAACCACGCTTCTCTCTCTCACTCTAGTTAAAGAAAGAACGTTCCCAGAAGCCGAATTTCCCAAGAGGCAATCAAACATAAACTCAATTAACACAGCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCAAGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGGTGAATCCGATTCCTTTTTTTTTTTGCTGGGATCTTGAAAGATCTATTAAATTCCGGTGAGTTTTTCTTTTCTGATTTCGTAATTCTTACCGTGTGATGGTTATGTGAGTGTGTGTGTGTGTGTGTTTTTTTTTTTTAACGAGCATGTGTTCAATGAATGATTCTTTTTCTTTACTTGTTTCTCATTGTTGAATTTCATTTCTCTGATCAGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGGTGTGCATCTTTCACAGATTTCGTTTTACTGTTGGGATTTGTTCGAATGAGGATTTCGTTCCGATCATTTGTTTGCTTACACGATGAAGTGGTTAGAGAAGAGATCCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTTCTCTATCTCTGGAAGAGTCTATTTTTGAAAATTATTTGCTCCGGAGCCTTTGAAGTTTTTACTTAAATAGCGAACACTCTTCGCCTTTTTCTCTTTTTGTTAAAGTCTGGACGGCGTGTTAGCTAATCGAAGAATGGGGAGTTCATTCTACCGGAATTCTGCAAATATAGATATTATGGTCTTTTGATAAATTTTGGTTTCTTATGGGAAAGGACCGTAAATAGTGCATCAGTTTGTGTTATTGGTGTATGAATTCTTTTTTTTTTTGTCAAATCACTTCCCAGCTCGTGGCTTGGGGGTTCTTATTGTCGAGTCTAGATAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACTACTATAACATAAAAAAAAGAGTCCTTTTTTTTTTTTTTTTTTTTGGTAGTGATCCATTGGAAGTTAATTCTGTATCAATATTCTTGCTCTTGTGGTCAAGTGTTGATTTTTATGTCCTTGTGTTATTTCCGCAGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAGGTGTAGTTTTCGGCTGGCATCCTTTTGTCTGTGGTGCCGTTTCGGTCACGGGGCTTTGTTTCTTTGA

mRNA sequence

ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCAAGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAGGTGTAGTTTTCGGCTGGCATCCTTTTGTCTGTGGTGCCGTTTCGGTCACGGGGCTTTGTTTCTTTGA

Coding sequence (CDS)

ATGACACCAGGTGTCCCGCCATTCGATGCTGAGCCCTCTGCCACGTCATTCACGAATCTCTTATCTCCACCTCACCCATCTCTTTTTCATCCTACGCTTCTTATTTCCATATATTTCTCTTCATCCAACGGCTCTCCCTTCCCTTCCAGAGTCAAACGAGAGACACAAAAGCCTAAGGGGCTAAAGCAAATTGGGCGAAGGGGATTTTTGTCTGACTTTGCGTTCTTGCTCCGACGATTCTTTCCTGCAATCTTCTTGGATTTTATTTTCATTCATTCAAGCCATCTCATTCTCTTTTGCCGCATCGGTTATGTAACAGATAGCGACGAGTTTTGGTGTCTTCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGAGGGGGAGGGGGGAGGAAGATCATCTGTTGCTGTGAATCTGGCGAAATGGATCTGTAGGTGTAGTTTTCGGCTGGCATCCTTTTGTCTGTGGTGCCGTTTCGGTCACGGGGCTTTGTTTCTTTGA

Protein sequence

MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKGLKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSSHLILFCRIGYVTDSDEFWCLPLQNVVLSLVSFGSSLLPRGEGEGGGRSSVAVNLAKWICRCSFRLASFCLWCRFGHGALFL*
Homology
[Close]
BLAST of CSPI05G24510 vs. ExPASy TrEMBL
Match: A0A0A0KQY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0 

Query: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60
           MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG
Sbjct: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60

Query: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSSHLILFCRIGYVTDSDEFWCLPLQNVV 120
           LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHS HLILFCRIGYVTDSDEFWCLPLQNVV
Sbjct: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWCLPLQNVV 120

Query: 121 LSLVSFGSSLLPRGEGEGGGR 142
           LSLVSFGSSLLPRGEGEGGGR
Sbjct: 121 LSLVSFGSSLLPRGEGEGGGR 141

[Close]
BLAST of CSPI05G24510 vs. NCBI nr
Match: KAE8648774.1 (hypothetical protein Csa_008400 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 141 RSSVAVNLAKWICRCSFRLASFCLWCRFGHGALFL 176
           RSSVAVNLAKWICRCSFRLASFCLWCRFGHGALFL
Sbjct: 84  RSSVAVNLAKWICRCSFRLASFCLWCRFGHGALFL 118

The following BLAST results are available for this feature:
BLAST of CSPI05G24510 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G24510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQY62.7e-7399.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1[more]
BLAST of CSPI05G24510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648774.12.1e-11100.00hypothetical protein Csa_008400 [Cucumis sativus][more]
BLAST of CSPI05G24510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G24510.1CSPI05G24510.1mRNA