CSPI05G23750 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G23750
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 23705669 .. 23705887 (-)
RNA-Seq Expression	CSPI05G23750
Synteny	CSPI05G23750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAATAGATGAAAAGGGAAAAGGTGTTGGAGAAAATCACCTTCAGATCAAAATTTTGATAGATGCAACAAAACTGTTAGATATGAGATATTCTGATCAAGAATGGATTCACGGGCGAAGAACAATGGATTCTCGTCTCTTATGGAAAGCTATTGGATTTTTATTAGAACGGCAAAATTTATCGTTTGTGATAGAATGGTATAATATGGTTTGA

mRNA sequence

ATGGAGGAAATAGATGAAAAGGGAAAAGGTGTTGGAGAAAATCACCTTCAGATCAAAATTTTGATAGATGCAACAAAACTGTTAGATATGAGATATTCTGATCAAGAATGGATTCACGGGCGAAGAACAATGGATTCTCGTCTCTTATGGAAAGCTATTGGATTTTTATTAGAACGGCAAAATTTATCGTTTGTGATAGAATGGTATAATATGGTTTGA

Coding sequence (CDS)

ATGGAGGAAATAGATGAAAAGGGAAAAGGTGTTGGAGAAAATCACCTTCAGATCAAAATTTTGATAGATGCAACAAAACTGTTAGATATGAGATATTCTGATCAAGAATGGATTCACGGGCGAAGAACAATGGATTCTCGTCTCTTATGGAAAGCTATTGGATTTTTATTAGAACGGCAAAATTTATCGTTTGTGATAGAATGGTATAATATGGTTTGA

Protein sequence

MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRLLWKAIGFLLERQNLSFVIEWYNMV*

Homology

[Close]

BLAST of CSPI05G23750 vs. ExPASy TrEMBL
Match: A0A0A0KQM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605120 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRLLWKAIGFLLERQ 60
          MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRL WKAIGFLLERQ
Sbjct: 1  MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRLSWKAIGFLLERQ 60

Query: 61 NLSFVIEWYNM 72
          NLSFVIEWYNM
Sbjct: 61 NLSFVIEWYNM 71

[Close]

BLAST of CSPI05G23750 vs. NCBI nr
Match: KGN51918.1 (hypothetical protein Csa_008704 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRLLWKAIGFLLERQ 60
          MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRL WKAIGFLLERQ
Sbjct: 1  MEEIDEKGKGVGENHLQIKILIDATKLLDMRYSDQEWIHGRRTMDSRLSWKAIGFLLERQ 60

Query: 61 NLSFVIEWYNM 72
          NLSFVIEWYNM
Sbjct: 61 NLSFVIEWYNM 71

The following BLAST results are available for this feature:

BLAST of CSPI05G23750 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G23750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQM8	1.3e-32	98.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605120 PE=4 SV=1	[more]

BLAST of CSPI05G23750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51918.1	2.6e-32	98.59	hypothetical protein Csa_008704 [Cucumis sativus]	[more]

BLAST of CSPI05G23750 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G23750.1	CSPI05G23750.1	mRNA