CSPI05G23380 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G23380
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 23459939 .. 23460291 (-)
RNA-Seq Expression	CSPI05G23380
Synteny	CSPI05G23380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTGGAAACTGATTCAGGGGATGATAATAGAAGAGGGTTTAGAGGAGATTCGTCCAATGTCAATCGAAGGGGTTGGAGCGGAGATGTTGAATCTTTGCAAATTGTGATGAACTGGAAAGGGCATTGCTGATTTTAGGGTAGGAAGAGTATGATGAAGTCACTGGGAATTTGTTAGAGAGGAAAGTGGGAAGAAACGGCATAAGCAACAAGAGGAAGGATTTATCGAGGTTTTTGGTTTGGCTTAATTTGGATAAGATTAAGAGACAAAGAAGAAGAAGATGTGATGCAATAATGATAATCAAACTACATACTCAGGTCACCAATGTTGGGCTGACGAACGTGAGTTAG

mRNA sequence

ATGGCATTGGAAACTGATTCAGGGGATGATAATAGAAGAGGGTTTAGAGGAGATTCGTCCAATGTCAATCGAAGGGGTTGGAGCGGAGATGTTGAATCTTTGCAAATTGAAGAGTATGATGAAGTCACTGGGAATTTGTTAGAGAGGAAAGTGGGAAGAAACGGCATAAGCAACAAGAGGAAGGATTTATCGAGGTTTTTGGTTTGGCTTAATTTGGATAAGATTAAGAGACAAAGAAGAAGAAGATGTGATGCAATAATGATAATCAAACTACATACTCAGGTCACCAATGTTGGGCTGACGAACGTGAGTTAG

Coding sequence (CDS)

ATGGCATTGGAAACTGATTCAGGGGATGATAATAGAAGAGGGTTTAGAGGAGATTCGTCCAATGTCAATCGAAGGGGTTGGAGCGGAGATGTTGAATCTTTGCAAATTGAAGAGTATGATGAAGTCACTGGGAATTTGTTAGAGAGGAAAGTGGGAAGAAACGGCATAAGCAACAAGAGGAAGGATTTATCGAGGTTTTTGGTTTGGCTTAATTTGGATAAGATTAAGAGACAAAGAAGAAGAAGATGTGATGCAATAATGATAATCAAACTACATACTCAGGTCACCAATGTTGGGCTGACGAACGTGAGTTAG

Protein sequence

MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDEVTGNLLERKVGRNGISNKRKDLSRFLVWLNLDKIKRQRRRRCDAIMIIKLHTQVTNVGLTNVS*

Homology

[Close]

BLAST of CSPI05G23380 vs. ExPASy TrEMBL
Match: A0A0A0KSK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604250 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 55/104 (52.88%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDEVTGNLLERKVGRNGISNKR 60
           MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDE     +  + G+       
Sbjct: 1   MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDEGHWEFVREESGK------- 60

Query: 61  KDLSRFLVWLNLDKIKRQRRRRCDAIMIIKLHTQVTNVGLTNVS 105
                          KR +++    I       +VTNVGLTNVS
Sbjct: 61  ---------------KRHKQQEEGFI-------EVTNVGLTNVS 75

[Close]

BLAST of CSPI05G23380 vs. NCBI nr
Match: KGN51879.1 (hypothetical protein Csa_008552 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 55/104 (52.88%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 1   MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDEVTGNLLERKVGRNGISNKR 60
           MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDE     +  + G+       
Sbjct: 1   MALETDSGDDNRRGFRGDSSNVNRRGWSGDVESLQIEEYDEGHWEFVREESGK------- 60

Query: 61  KDLSRFLVWLNLDKIKRQRRRRCDAIMIIKLHTQVTNVGLTNVS 105
                          KR +++    I       +VTNVGLTNVS
Sbjct: 61  ---------------KRHKQQEEGFI-------EVTNVGLTNVS 75

The following BLAST results are available for this feature:

BLAST of CSPI05G23380 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G23380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSK3	7.7e-15	52.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604250 PE=4 SV=1	[more]

BLAST of CSPI05G23380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51879.1	1.6e-14	52.88	hypothetical protein Csa_008552 [Cucumis sativus]	[more]

BLAST of CSPI05G23380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G23380.1	CSPI05G23380.1	mRNA