CSPI05G22920 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G22920
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LSM12 homolog A
Location	Chr5: 23186693 .. 23188856 (+)
RNA-Seq Expression	CSPI05G22920
Synteny	CSPI05G22920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAACGAGAATAGAAGAGATAGATTAGTAATATAGGGTTATTAATGTAAAGTTAATAAATATATGTATATATAATTAAATTAGAAGGTATTGTTGTTTGAAGAAAAGGGCAAAGCCCTAATTTATATGGGGATTAGATAGTTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAGTTTTTTTTTTTTTTTCTTCACTTTTCGTTATCTTGAATTCCTTGACTGTTTCTTCCTTCTGTTGTTATTTTTGTGCTTTCGATACAGGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGTTTTGGTTTTGTTTTTCGATAACCTATTGTTTCCTCTACATTTGGTTGTTGGGTTTAATTGATTTTTTCTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGTAAGTAATTCTTTTATGGTTTTGAATCCTTTAATGCCATAATGCCATATCAACCTTTGGATATTTCAATCTAGAAATTCAAGCACTTTTATCATGTTAAAGTGAAAATTGGATCCTAAAAGGAATGGAGGATTAGGTAATTGGAACATAATAGACCGCTATTAGATATTTTGAACGGGCTAACCTGACCAGAAGGCTAATTCACCATGTTTGTCTTCCGAATCTGTTTCTTAACATTTATCTATTTATTTTTATCATTCTCCGTTTTTTTTTAAAAAATGAATACATTAGTTTATAATTAAATTCAGTAGGTAAAAGTATTGTATTTGCATCTGTACGGTATGAAAATGGGATGTATCTGCTTTTTGTTATTAGAAATTACTGGGTTGCCAACCCAAGTATGTTCATTGGATTATCTCATTTCATGAGGTATGCTACCTGAATGAGACCCAAAGTGATAGAATTCCATCTTGAAGTTTGTAATATAATTTTTCTACCATACATTTTTGTTTTTACATTTTTACTAACATCATTAGGCTTCCTGTTCGTTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCTGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGGTATGAATGTTCAATAAATATTGAAAAGCTTGTGAATGGATATATGTTTTTCATTTCTTTCTTTGTGATGCCTTACACAAACTGACCTTAAACTTATCAATGTATAAATATTGATGTATTTTTTTCTAAAAGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGATGCTCATTCATCCCTATCCTTTCTTTTCTGGGTGCGGTTAGCTGTACGGAGCCAAGGTATTATCTGATTTAGAGGCATCAGTGTCAGCAATCTCGGAGGAATTTGGTGTTTGAGTGGTAACCTAGTCGAATTTAGTGTAACCTGTTAGCCAAAGTTTTTTGCTTAGTGGTTTCTGGTCGTTGATTTTTTACTGTTTATGGACTGCATTGGACACGACAAAGCACTTTCTGTGTCCATATTTAAAGTTTCCCAAGATTTGCCCTGCAAGTATACAAGCAAATTCAAATGTAATAACTGTACTTATTTCATTTGGTCATAACGTGGAAAAAGAAAAGGTTTTGAAATAGATGACCGGCCCGTCTCATGGTCTAACATTGATATTGTTTGGGCATAAGATTGCCTCTATAGTTTATTTGCCATGTCTTTCAATGCTGTTCGTTGGAGTTTAAAAAGTTGTGTGAAATTACATTTGTAGATGTTGTGGGCATCTTCCTTCAAAAAAAGTAGTAGGCAAATGAAAAGCTTGGACAGCCTATGGCGCCAAAAGAACATTGAT

mRNA sequence

AAAAGAAACGAGAATAGAAGAGATAGATTAGTAATATAGGGTTATTAATGTAAAGTTAATAAATATATGTATATATAATTAAATTAGAAGGTATTGTTGTTTGAAGAAAAGGGCAAAGCCCTAATTTATATGGGGATTAGATAGTTGAGTGGTTACCCAACTCCTTGAGTAGGAGGAAACAAATTTTATAGCGAGGAAGAAGGAAGGGGGAGAAAATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCAGGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCTGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGATGCTCATTCATCCCTATCCTTTCTTTTCTGGGTGCGGTTAGCTGTACGGAGCCAAGGTATTATCTGATTTAGAGGCATCAGTGTCAGCAATCTCGGAGGAATTTGGTGTTTGAGTGGTAACCTAGTCGAATTTAGTGTAACCTGTTAGCCAAAGTTTTTTGCTTAGTGGTTTCTGGTCGTTGATTTTTTACTGTTTATGGACTGCATTGGACACGACAAAGCACTTTCTGTGTCCATATTTAAAGTTTCCCAAGATTTGCCCTGCAAGTATACAAGCAAATTCAAATGTAATAACTGTACTTATTTCATTTGGTCATAACGTGGAAAAAGAAAAGGTTTTGAAATAGATGACCGGCCCGTCTCATGGTCTAACATTGATATTGTTTGGGCATAAGATTGCCTCTATAGTTTATTTGCCATGTCTTTCAATGCTGTTCGTTGGAGTTTAAAAAGTTGTGTGAAATTACATTTGTAGATGTTGTGGGCATCTTCCTTCAAAAAAAGTAGTAGGCAAATGAAAAGCTTGGACAGCCTATGGCGCCAAAAGAACATTGAT

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCAGGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTGATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCTGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGA

Protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ*

Homology

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BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRR--NIRLLKANYI 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L+  S  G     ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64

Query: 67  KEFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L +  +     RAR E   + ++A A  I  GV+ E Q +F  + 
Sbjct: 65  SEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYA--ISAGVSIEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 169
           KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 125 KTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

[Close]

BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14
Identity = 53/166 (31.93%), Postives = 84/166 (50.60%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRR--NIRLLKANYI 66
           G G+ FSVGS  S  T LG   QG+V+ FD PS +L L+     G     ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64

Query: 67  KEFSFL-GHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L +   +    RAR E   + + A A  +  GV+ E Q +F  + 
Sbjct: 65  SEVDIITDRAETPPPLASLNFNKLVNRARAEKEDKLSLAYA--VSAGVSVEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 169
           KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K++E
Sbjct: 125 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVE 168

[Close]

BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot
Match: Q6GP89 (Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 53/180 (29.44%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 6   SGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANY 65
           +G G+ F++G++ S +T      QG+V+ FD PS +L L+  S  G     +I LL  +Y
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKANHADILLLNLDY 61

Query: 66  IKEFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDAL 125
           + +   +    + P  L +  L++  L +R  L   +  ++A  I  GV+ + Q +F  +
Sbjct: 62  VSDVEVINERTQTPPPLAS--LNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTI 121

Query: 126 SKTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 182
            KT+   +W +  IVVM+EV +S PY  E+  G    A   V K++E   + ++ + G Q
Sbjct: 122 HKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVEKHFRDVENQKGVQ 179

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BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 52/164 (31.71%), Postives = 84/164 (51.22%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYIKE 68
           G+ FSVGS  S +T      QG+V+ FD PS +L L+  S  G     +I L+   Y+ E
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQYVSE 64

Query: 69  FSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT 128
              +    E P  L +  L+++ L  +  +   +  ++A  I  GV+ E Q +F  + KT
Sbjct: 65  VEIINDRTETPPPLAS--LNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 124

Query: 129 L-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 125 IKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVE 166

[Close]

BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-13
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYIKE 68
           G+ FSVGS  S +T      QG+V+ FD  S +L L+  S  G     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 69  FSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT 128
              +    E P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHKT 125

Query: 129 L-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.3e-96
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL
Match: A0A6J1DDK3 (protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP RNIRLLK
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPHRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL
Match: A0A6J1GZX6 (protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 176/180 (97.78%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGG 180
           ALSKTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVLE ERKRLQVRGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGG 176

[Close]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL
Match: A0A6J1ILU4 (protein LSM12 homolog A OS=Cucurbita maxima OX=3661 GN=LOC111476439 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 174/180 (96.67%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNC LDLNTLRAREELAIRQAE EAERIGVGVT EAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCCLDLNTLRAREELAIRQAEIEAERIGVGVTGEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of CSPI05G22920 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of CSPI05G22920 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 352.8 bits (904), Expect = 1.7e-93
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGSG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of CSPI05G22920 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 178

Query: 181 Q 182
           Q
Sbjct: 181 Q 178

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BLAST of CSPI05G22920 vs. NCBI nr
Match: XP_022151106.1 (protein LSM12 homolog [Momordica charantia])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP RNIRLLK
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPHRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of CSPI05G22920 vs. NCBI nr
Match: XP_022956734.1 (protein LSM12 homolog A [Cucurbita moschata] >XP_023540548.1 protein LSM12 homolog A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90
Identity = 176/180 (97.78%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of CSPI05G22920 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 199.9 bits (507), Expect = 1.8e-51
Identity = 103/174 (59.20%), Postives = 132/174 (75.86%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYI 66
           G G+ F+VG+ +S+K   GDEF+G V+ +D   N +  +EG+KP P   +N R++ A++I
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNASFI 73

Query: 67  KEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 126
              S+LG  EDPLD  N  +DLN LRA+E LAIRQAEA+AER+GVGVT+EAQSIFDALSK
Sbjct: 74  TGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSK 133

Query: 127 TLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRG 179
           TLPV+W+ + I+VM EVRV SPYL + V GGT AAN RVKKVLE ER+RLQ+ G
Sbjct: 134 TLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]

BLAST of CSPI05G22920 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 121.7 bits (304), Expect = 6.1e-28
Identity = 76/216 (35.19%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 3   LDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSN---------------------- 62
           +D  G  + F VG  +++K T GD+F G V+ +D   N                      
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  ------------------ILVLQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLK 122
                             +++LQEG+KP P   +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 123 NCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNE 177
           N  ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +
Sbjct: 131 NTLVNLDGLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGD 190

The following BLAST results are available for this feature:

BLAST of CSPI05G22920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	2.6e-15	33.13	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6NSN1	3.7e-14	31.93	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q6GP89	1.4e-13	29.44	Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1	[more]
Q5ZML5	2.4e-13	31.71	Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1	[more]
Q0VCF9	5.4e-13	32.32	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]

BLAST of CSPI05G22920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9	5.3e-96	100.00	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A6J1DDK3	8.7e-91	95.58	protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1	[more]
A0A6J1GZX6	1.1e-90	97.78	protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1	[more]
A0A5A7SWT7	2.1e-89	96.65	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1ILU4	3.7e-89	96.67	protein LSM12 homolog A OS=Cucurbita maxima OX=3661 GN=LOC111476439 PE=3 SV=1	[more]

BLAST of CSPI05G22920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135229.1	1.1e-95	100.00	protein LSM12 homolog A [Cucumis sativus]	[more]
XP_038892233.1	1.7e-93	98.90	protein LSM12 homolog A-like [Benincasa hispida]	[more]
KGN52415.2	1.5e-92	98.34	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
XP_022151106.1	1.8e-90	95.58	protein LSM12 homolog [Momordica charantia]	[more]
XP_022956734.1	2.3e-90	97.78	protein LSM12 homolog A [Cucurbita moschata] >XP_023540548.1 protein LSM12 homol...	[more]

BLAST of CSPI05G22920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	1.8e-51	59.20	RNA-processing, Lsm domain	[more]
AT1G70220.1	6.1e-28	35.19	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 80..166 e-value: 7.4E-33 score: 125.2
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 84..166 e-value: 8.9E-24 score: 83.4
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G22920.1	CSPI05G22920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding