CSPI05G22550 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G22550
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ubiquitin
Location	Chr5: 22965861 .. 22966739 (+)
RNA-Seq Expression	CSPI05G22550
Synteny	CSPI05G22550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAATGCATTAGTTTTAATTAAAATGGAGACCGGAAACCCTAAAAGAGCGAGTGGTCACCTATAAAAGGCAAGCATTCTTCTCCCCCAAACCCTTGTTATTCCCAATCGGCCGTGCGGCAACCGAAGCCTCTCAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAACATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGGTGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTCCTTCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTTAGGAAGGAGTGCCCTAACGCTGAGTGCGGCGCTGGAACTTTCATGGCCAATCACTTTGACCGCCACTACTGCGGTAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAGGTTTAATCTGTTGTTTTTTTTTTCCCATCATGTTTTCGTTTTATCTAAATGTTTGATGTCGTTGAATTTATCTAGAATTGCTACTCCTGTTTGTGGAGTTTAGTTCTTGACATGGATTTTGTTTTCTTAATGTCGATTTATTATCTTTTTTATTGAGACCCACATACTTAGTCCGTCTTCTTGCGATTATTATCCTTGAAATAACTGTTAAATTTTGGGTTTTGGTTTAATAGATTATATGCTTCTCGTAAACATCATTATTTTTGTAC

mRNA sequence

TTAAAATGCATTAGTTTTAATTAAAATGGAGACCGGAAACCCTAAAAGAGCGAGTGGTCACCTATAAAAGGCAAGCATTCTTCTCCCCCAAACCCTTGTTATTCCCAATCGGCCGTGCGGCAACCGAAGCCTCTCAACCATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAACATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGGTGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTCCTTCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTTAGGAAGGAGTGCCCTAACGCTGAGTGCGGCGCTGGAACTTTCATGGCCAATCACTTTGACCGCCACTACTGCGGTAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAGGTTTAATCTGTTGTTTTTTTTTTCCCATCATGTTTTCGTTTTATCTAAATGTTTGATGTCGTTGAATTTATCTAGAATTGCTACTCCTGTTTGTGGAGTTTAGTTCTTGACATGGATTTTGTTTTCTTAATGTCGATTTATTATCTTTTTTATTGAGACCCACATACTTAGTCCGTCTTCTTGCGATTATTATCCTTGAAATAACTGTTAAATTTTGGGTTTTGGTTTAATAGATTATATGCTTCTCGTAAACATCATTATTTTTGTAC

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAAGTCGAGAGCTCCGATACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACACTAGCCGACTACAACATTCAGAAGGAATCCACGCTCCACCTTGTGCTCCGTCTCAGAGGAGGTGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTCCTTCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTTAGGAAGGAGTGCCCTAACGCTGAGTGCGGCGCTGGAACTTTCATGGCCAATCACTTTGACCGCCACTACTGCGGTAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD*

Homology

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BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot
Match: P62980 (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2)

HSP 1 Score: 308.9 bits (790), Expect = 3.3e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot
Match: P62981 (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2)

HSP 1 Score: 308.9 bits (790), Expect = 3.3e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot
Match: P47905 (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 8.9e-81
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 154
           CPN ECGAGTFMANHFDRHYCGKCG TYVY KA
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 153

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BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 7.5e-80
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot
Match: P59233 (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27AC PE=2 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 9.8e-80
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

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BLAST of CSPI05G22550 vs. ExPASy TrEMBL
Match: A0A6J1HTL0 (Ubiquitin OS=Cucurbita maxima OX=3661 GN=LOC111466472 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy TrEMBL
Match: A0A4D9ASK9 (Ubiquitin OS=Salvia splendens OX=180675 GN=RP-S27Ae PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy TrEMBL
Match: A0A6J1GXP3 (Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111458454 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy TrEMBL
Match: A0A5A7SUY8 (Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001130 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. ExPASy TrEMBL
Match: E5GBI4 (Ubiquitin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. NCBI nr
Match: PHT59822.1 (Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 28  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 87

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 88  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 147

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 148 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 183

[Close]

BLAST of CSPI05G22550 vs. NCBI nr
Match: XP_016554632.1 (PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077.1 ubiquitin extension protein [Capsicum annuum])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 84  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 143

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 144 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179

[Close]

BLAST of CSPI05G22550 vs. NCBI nr
Match: NP_001269170.1 (ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Cucumis melo] >XP_022151041.1 ubiquitin-40S ribosomal protein S27a [Momordica charantia] >XP_022944801.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022956912.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022966908.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_022994820.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_023511766.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_023542935.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_038893211.1 ubiquitin-40S ribosomal protein S27a [Benincasa hispida] >XP_041999464.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042004337.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042063578.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >ADN33826.1 ubiquitin extension protein [Cucumis melo subsp. melo] >KAA0034303.1 ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa] >KAF3629003.1 Ubiquitin-40S ribosomal protein S27a [Capsicum annuum] >KAG6573732.1 Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia] >KAG8387388.1 hypothetical protein BUALT_Bualt02G0016100 [Buddleja alternifolia] >KAG9157188.1 hypothetical protein Leryth_004865 [Lithospermum erythrorhizon] >PHU30403.1 Ubiquitin-40S ribosomal protein S27a [Capsicum chinense] >CAA2994933.1 Ubiquitin-40S ribosomal S27a [Olea europaea subsp. europaea])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CSPI05G22550 vs. NCBI nr
Match: XP_042057148.1 (ubiquitin-40S ribosomal protein S27a-like [Salvia splendens])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 49  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 108

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 109 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 168

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 169 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 204

[Close]

BLAST of CSPI05G22550 vs. NCBI nr
Match: KAG6601511.1 (Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 62  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 121

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 122 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 181

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 182 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 217

[Close]

BLAST of CSPI05G22550 vs. TAIR 10
Match: AT2G47110.1 (ubiquitin 6 )

HSP 1 Score: 297.7 bits (761), Expect = 5.3e-81
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CSPI05G22550 vs. TAIR 10
Match: AT2G47110.2 (ubiquitin 6 )

HSP 1 Score: 297.7 bits (761), Expect = 5.3e-81
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CSPI05G22550 vs. TAIR 10
Match: AT3G62250.1 (ubiquitin 5 )

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-81
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CSPI05G22550 vs. TAIR 10
Match: AT1G23410.1 (Ribosomal protein S27a / Ubiquitin family protein )

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-77
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH HKKVKLAVLQFYKVD SGKVQRL+KE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 154
           CP+  CG GTFMA+HFDRHYCGKCG TYV+ KA
Sbjct: 121 CPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 153

[Close]

BLAST of CSPI05G22550 vs. TAIR 10
Match: AT5G03240.1 (polyubiquitin 3 )

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305

The following BLAST results are available for this feature:

BLAST of CSPI05G22550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62980	3.3e-83	98.72	Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=...	[more]
P62981	3.3e-83	98.72	Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 S...	[more]
P47905	8.9e-81	98.04	Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2	[more]
P59232	7.5e-80	96.75	Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A...	[more]
P59233	9.8e-80	96.10	Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27A...	[more]

BLAST of CSPI05G22550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTL0	4.9e-82	100.00	Ubiquitin OS=Cucurbita maxima OX=3661 GN=LOC111466472 PE=3 SV=1	[more]
A0A4D9ASK9	4.9e-82	100.00	Ubiquitin OS=Salvia splendens OX=180675 GN=RP-S27Ae PE=3 SV=1	[more]
A0A6J1GXP3	4.9e-82	100.00	Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111458454 PE=3 SV=1	[more]
A0A5A7SUY8	4.9e-82	100.00	Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001130 PE=3...	[more]
E5GBI4	4.9e-82	100.00	Ubiquitin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of CSPI05G22550 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT59822.1	1.0e-81	100.00	Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum]	[more]
XP_016554632.1	1.0e-81	100.00	PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077...	[more]
NP_001269170.1	1.0e-81	100.00	ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PRED...	[more]
XP_042057148.1	1.0e-81	100.00	ubiquitin-40S ribosomal protein S27a-like [Salvia splendens]	[more]
KAG6601511.1	1.0e-81	100.00	Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of CSPI05G22550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47110.1	5.3e-81	96.75	ubiquitin 6	[more]
AT2G47110.2	5.3e-81	96.75	ubiquitin 6	[more]
AT3G62250.1	7.0e-81	96.10	ubiquitin 5	[more]
AT1G23410.1	2.1e-77	92.81	Ribosomal protein S27a / Ubiquitin family protein	[more]
AT5G03240.1	1.8e-36	98.70	polyubiquitin 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 11..31 score: 85.2 coord: 53..74 score: 91.18 coord: 32..52 score: 95.05
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 3.0E-35 score: 133.1
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 6.0E-34 score: 115.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452106
IPR002906	Ribosomal protein S27a	SMART	SM01402	Ribosomal_S27_2	coord: 102..147 e-value: 3.1E-28 score: 109.8
IPR002906	Ribosomal protein S27a	PFAM	PF01599	Ribosomal_S27	coord: 102..147 e-value: 1.7E-26 score: 91.9
IPR038582	S27a-like superfamily	GENE3D	6.20.50.150		coord: 81..154 e-value: 2.1E-40 score: 138.9
None	No IPR available	GENE3D	3.10.20.90		coord: 1..80 e-value: 5.6E-46 score: 156.3
None	No IPR available	PANTHER	PTHR10666:SF363	UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1	coord: 1..146
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..146
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 1..76 e-value: 2.15267E-55 score: 166.851
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 100..153
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G22550.1	CSPI05G22550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome