CSPI05G22200 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G22200
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 22672095 .. 22672762 (-)
RNA-Seq ExpressionCSPI05G22200
SyntenyCSPI05G22200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGATTCAAATCTCATCCTCATGGAATAAAATTGTTCTTTACATGACCACTTTACGAGGCATTCAAATATACATTCACAAAAAAGAAACCATCATATTTGCTTCTCTAGCCGATTAGAAATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAGCCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACCGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAAATTCTAATAGAAACAAACTGTTCCAATTGGTGATATTCACAAGACCCAATAATGCTCTGATGCTACAGAGCTCCTTGCAATTGTTAAAATATTTATAGTTCCTATGTGAACATTTCAAAGTTCCAGCAATAATACAGACTGTTTATGTTAGTCTTTTTATGGCACTGAGAACTATGAGAATTATAAAAAATAATTAAACTGTGGACTTCATATACCATTATGTTATTATTTCTTTCTAATTGGCCAAAGGTTTCAGGTCTGTCTGTTTGGG

mRNA sequence

ATTGGATTCAAATCTCATCCTCATGGAATAAAATTGTTCTTTACATGACCACTTTACGAGGCATTCAAATATACATTCACAAAAAAGAAACCATCATATTTGCTTCTCTAGCCGATTAGAAATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAGCCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACCGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAAATTCTAATAGAAACAAACTGTTCCAATTGGTGATATTCACAAGACCCAATAATGCTCTGATGCTACAGAGCTCCTTGCAATTGTTAAAATATTTATAGTTCCTATGTGAACATTTCAAAGTTCCAGCAATAATACAGACTGTTTATGTTAGTCTTTTTATGGCACTGAGAACTATGAGAATTATAAAAAATAATTAAACTGTGGACTTCATATACCATTATGTTATTATTTCTTTCTAATTGGCCAAAGGTTTCAGGTCTGTCTGTTTGGG

Coding sequence (CDS)

ATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAGCCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACCGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAA

Protein sequence

MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKSQKPHVTFSYGNNKVSDVHKTSKHHHAHFYTDDINDEAEEFIRLKQNQMSIDF*
Homology
BLAST of CSPI05G22200 vs. ExPASy TrEMBL
Match: A0A0A0KQ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.2e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKSQKPHVTFSYGNNKVSDVHKTS 60
          MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHK+QKPHVTFSYGNNKVSDVHKTS
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60

Query: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 92
          KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF
Sbjct: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 91

BLAST of CSPI05G22200 vs. ExPASy TrEMBL
Match: A0A5A7SUE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001490 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.5e-34
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 0

Query: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKSQKPHVTFS-YGNNKVSDVHKT 60
          MS RNS+LKFNVD GT SSDDYGGYISDSVLETRK+HK+QKPHVTFS   NN+V DVHKT
Sbjct: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60

Query: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMSID 91
          SKH HAHFYT+DINDEAEEFIRLK NQMSID
Sbjct: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQMSID 91

BLAST of CSPI05G22200 vs. NCBI nr
Match: KAA0034268.1 (hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK15652.1 hypothetical protein E5676_scaffold35G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 0

Query: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKSQKPHVTFS-YGNNKVSDVHKT 60
          MS RNS+LKFNVD GT SSDDYGGYISDSVLETRK+HK+QKPHVTFS   NN+V DVHKT
Sbjct: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60

Query: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMSID 91
          SKH HAHFYT+DINDEAEEFIRLK NQMSID
Sbjct: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQMSID 91

BLAST of CSPI05G22200 vs. NCBI nr
Match: KAG6573703.1 (hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 1  MSFRNSKLK-FNVDHGTHSSDDYGGYISDSVLETRKYHKSQKPHVTFSYGNNKVSDVHKT 60
          MSFR+S+LK F+V HG HSSD+YGGY+SDS+L TR++ KS + HVTFS   N++SDV++ 
Sbjct: 1  MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA 60

Query: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMS 89
          S+       T++I+D AEEFIRLK NQMS
Sbjct: 61 SRRCR----TENIDDVAEEFIRLKHNQMS 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQ476.2e-4598.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1[more]
A0A5A7SUE36.5e-3484.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0034268.11.3e-3384.62hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK1565... [more]
KAG6573703.18.7e-1758.43hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G22200.1CSPI05G22200.1mRNA