CSPI05G21830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G21830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Location	Chr5: 22448512 .. 22449656 (-)
RNA-Seq Expression	CSPI05G21830
Synteny	CSPI05G21830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTATACTAGTTAGTATTTTTTATTTTAATTATCCCAAAACACATTAGTGAGAAATGAAGATTAAGTTAAATGTTACGTCAAAAGTGTTTGTTATATGGTGAATGAAAATTAGAATTAGAAGAAGATAATATGGATGAGAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCAAAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTGATTAGATGATCCTTAAATTACTTGTAATTTTAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCTTTTTTAGTGTTTATAATCAATATTCACCAACCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATACCACTTTCGTCCAGTTCTATGCTTATTTTCGTTCATTTTTATTACTTTCATCTGTTAATTTATGCATTTACTAGTTG

mRNA sequence

TAGTTATACTAGTTAGTATTTTTTATTTTAATTATCCCAAAACACATTAGTGAGAAATGAAGATTAAGTTAAATGTTACGTCAAAAGTGTTTGTTATATGGTGAATGAAAATTAGAATTAGAAGAAGATAATATGGATGAGAAAGGAATAGTGATGGCAACAAAATTTTGAGGCTCAAAATTTCCCAATCCCACCGTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCAAAATCCTCTCTCAAATTTCCCAAAAACGCTCTTCACATCCCTAATTCCTATTCCCTACACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGAAATGGTGATTAGATGATCCTTAAATTACTTGTAATTTTAAATGCAAATCTCTCTCTCTTATGCTTTATAAATGAAGCGTTGGAGTCTAAGCCCAAACTTGATTTCTTTTTGGGGTCTTTTTTAGTGTTTATAATCAATATTCACCAACCTCAACTTCCAATATACTTTCATTATTCTTATTAATACTTTTAGATACCACTTTCGTCCAGTTCTATGCTTATTTTCGTTCATTTTTATTACTTTCATCTGTTAATTTATGCATTTACTAGTTG

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACTATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCACTTCTCCCTTCAAAACCCGCCACCAAACCCATCTCCCTCCCTCTCCCTATCCTAACCAAACCTTCCCTCGCCGGTACTGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCGTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATAAATAGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTGCTGGCGTCGGGGCTTGTGGGGACTCCGGAGGCAATGGCGGCGGAGGCAGGGAGCGACGGGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTTTAATATATTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGATCGGAGTGA

Protein sequence

MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE*

Homology

[Close]

BLAST of CSPI05G21830 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-49
Identity = 125/199 (62.81%), Postives = 140/199 (70.35%), Query Frame = 0


Query: 1   MAATMA-TMAILNAKCFT-PINKTPLLPSKPATKPISL--------PLPILTKPSLAGTA 60
           MAATMA TMA+LN KC T   NKT     KP +KPISL         LP+   P +   A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTLSSGDAALAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+TL S D A A QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----AGSDGRGQLLLIVVAPAIAW 180
           IN+MR E KA IVGLGL GL  SG L+ TPEA AA      GSD RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of CSPI05G21830 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-43
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL
Match: A0A0A0KTG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.5e-87
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL
Match: A0A5A7SY80 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001810 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTL
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL
Match: A0A1S3BDT7 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488936 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTL
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL
Match: A0A6J1KD85 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493283 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.4e-71
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60
           MAATMATMAILNAKCFTP N+T  PLLPSKP T+PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIP-SPKSSLAGSAIAGAIFST 60

Query: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 180
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 178

[Close]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL
Match: A0A6J1GXR1 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458441 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.6e-71
Identity = 159/181 (87.85%), Postives = 164/181 (90.61%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60
           MAATMATMAILNAKCFTP N+T  PLLPSKP T PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFST 60

Query: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 180
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 178

[Close]

BLAST of CSPI05G21830 vs. NCBI nr
Match: XP_004135291.1 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 3.1e-87
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830 vs. NCBI nr
Match: KGN52335.2 (hypothetical protein Csa_009403 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 7.0e-87
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60
           MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120
           SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL
Sbjct: 61  SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS+
Sbjct: 121 GLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSD 179

[Close]

BLAST of CSPI05G21830 vs. NCBI nr
Match: XP_008446112.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo] >KAA0034237.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa] >TYK15683.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 3.7e-80
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTP-LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTL
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTL 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of CSPI05G21830 vs. NCBI nr
Match: XP_038891337.1 (photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 1.6e-78
Identity = 170/180 (94.44%), Postives = 172/180 (95.56%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKPISLP-LPILTKPSLAGTAIAGAIFSTL 60
           MAATMATMAILNAKCFTP NKTPLLPSKP T+PISLP LP  TKPSLAGTAIAGAIFST 
Sbjct: 1   MAATMATMAILNAKCFTP-NKTPLLPSKP-TRPISLPSLPFPTKPSLAGTAIAGAIFSTF 60

Query: 61  SSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120
           SSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG
Sbjct: 61  SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVG 120

Query: 121 LGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRSE 180
           LGLGGLLASGLVGTPEAMAAEA SDGRGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Sbjct: 121 LGLGGLLASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of CSPI05G21830 vs. NCBI nr
Match: XP_022998705.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 9.2e-71
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKT--PLLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60
           MAATMATMAILNAKCFTP N+T  PLLPSKP T+PISLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTP-NRTPLPLLPSKP-TRPISLPIP-SPKSSLAGSAIAGAIFST 60

Query: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120
            S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  FSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 180
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 178

[Close]

BLAST of CSPI05G21830 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-44
Identity = 111/191 (58.12%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPINKTPLLPSKPATKP-ISLPLPILTKPSLA--GTAIAGAIFS 60
           MAA MAT      KC +     P L ++  +KP ISLP P     SLA   TA+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSSGDAALAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS  + ALA QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIVGLGL-GGLLASGLVGTP-----EAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQ 179
           K ++VGLG+ GGL ASGL+  P      A AA A SD RGQLLLIVV PA+ WVL+NILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

The following BLAST results are available for this feature:

BLAST of CSPI05G21830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	2.7e-49	62.81	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	2.9e-43	58.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CSPI05G21830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG2	1.5e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1	[more]
A0A5A7SY80	1.8e-80	95.00	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BDT7	1.8e-80	95.00	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX...	[more]
A0A6J1KD85	4.4e-71	87.85	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GXR1	7.6e-71	87.85	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita mosch...	[more]

BLAST of CSPI05G21830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135291.1	3.1e-87	100.00	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
KGN52335.2	7.0e-87	99.44	hypothetical protein Csa_009403 [Cucumis sativus]	[more]
XP_008446112.1	3.7e-80	95.00	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
XP_038891337.1	1.6e-78	94.44	photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida...	[more]
XP_022998705.1	9.2e-71	87.85	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CSPI05G21830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	2.1e-44	58.12	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 144..176 e-value: 3.6E-10 score: 39.5 coord: 78..110 e-value: 1.8E-14 score: 53.3
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 78..112 score: 10.827111
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..179
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G21830.1	CSPI05G21830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding