CSPI05G21430 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G21430
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein L22p/L17e family protein isoform 1
LocationChr5: 22171605 .. 22173568 (+)
RNA-Seq ExpressionCSPI05G21430
SyntenyCSPI05G21430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGGAAATTAGATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGTAAGCTTTCGATTGATGTTCGTTTCTTATCGCATTCTCAATTGCCTTTTTCCAATTGAATTCAGAGAGATGTTCTTCAATATTTTTGCAATTTTCGTGTTTTATTAAACTTAGGGCTTTTTCTTGAGAATTTCTCGATCCGGTTTGTTTCTTAGATTATTTCCGAAATAAAAAATTTAGGAAGGAGAAAGGAGATTTCAAGATCCTTATTGTCGCCAATGAACTGAGTTTCTGAATCACCTGGATTTAGTCTCATGATCGAACTGTTTTCTTAGGTTTTCTTGAGCTGAAGCCACGAATTTCGAGTTTTATTGTATGTTCTTTGTTTAATTTGTTAATTTATCAGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGATTTGTGAAGGTACTGTTTCTTATGCTTTTTCATATACAATTTGATTCCTATAAAACTGTTCGAAACTTGAATCCTTTTGTTGAGCATTTTTTGCACGGCTGACCCAGTCTTAGAATAATATGGAATGACCGGTCCTAAAAATCAACGAATATGTTACAAAGCACTTTACTGCTTCGAACTTCTAAAATCAGTTGCAGTAGACCACCCTTCCCCGTTGTTCATTTGCAGTAGAGGGCGCCGTGATCCATCACTGCCTAAAAGATGAGACTTTAGAGCCTCTCAGGATTCTATTTAATTTAAACTAGTCGTGATGACAGTTGAAAACCAATGATCCTGAGTTGTCCTCCATTGTGAAATCACAGCAGAAGCTCTCTAAAGCATTAATATTTTAGAAATTACGATAGGCTTTAAAATCCAACTGGGTTCTGCCATATTTTCGCAGTGTTTGGGTATCAGCGTGGGGGGTTTCTTTGAAAGAAATTGTGATGCTCATGAACTTTGTATTAGCCATCTGATTGTTTCATGTTGTTCCTAACCTAAGCAGAATGACATCGATAATTCTTTACTGGTTTTTAGGATTTGTTCATTGTGCATTGATGCCTCTACTTCTAAGATTTGGTCGTGTATACAAAAATTGCTTCTGTTGATGAGCTAACTCAGTTAGTCAGAGTTCTTATAATCTTATCATACCCTATAAGTAGGAAAAGGGATTATTTGAGTTTGGGAGAGAGATACCTCTAGTTAAATCCCCCTGATGTGGTTGTTGAAATACTATGCAGAATATTTGCAAGACCTCAATAATTCGGTGGTGGAAGCGGGGAAGCTCTCAAGCAATTTGTTTGAACGTTTGTTTATTGCTGTTTAATTTCTCGTGCTGTTAAGGAAGCACTTTGTGGGTTTGTATTGTCAAACAGAGATTTTGGTGCTGGAATAAACATTTTTAGCTCATAAGACTAAAAATTTCAAGTTGGTGAATTTGAGAAACCGATACCATCATTTTGTATTAGTGTTTTAAGTATACATCACTTGGAATTTCTTCTTATAGTTGATATTGATATCAAATGTTATTCATGGAGTTCTTGGTGGATTAATTCCTGATAATTTTTCGTGGAAGCCATCAAAGTAGTTGAAGCTAAGGTAATCTTAAGCCGAGCAGTGGGCTTTTGGAAATTGTACATGCTTTTCTCCTATTTTCTTTACTCTAGTTTTCATCTTTTTCAAG

mRNA sequence

AATGGGAAATTAGATGGATTTTGTTCATTCTTCGAGTTCATTTTCTCCCGCGGGTGAACTTCAGTTTACTGAGGAAGAAATCTCAATTCCTGCAATCGACTTTCGAGGAATATATTAGAAATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGATTTGTGAAGAATATTTGCAAGACCTCAATAATTCGGTGGTGGAAGCGGGGAAGCTCTCAAGCAATTTGTTTGAACGTTTGTTTATTGCTGTTTAATTTCTCGTGCTGTTAAGGAAGCACTTTGTGGGTTTGTATTGTCAAACAGAGATTTTGGTGCTGGAATAAACATTTTTAGCTCATAAGACTAAAAATTTCAAGTTGGTGAATTTGAGAAACCGATACCATCATTTTGTATTAGTGTTTTAAGTATACATCACTTGGAATTTCTTCTTATAGTTGATATTGATATCAAATGTTATTCATGGAGTTCTTGGTGGATTAATTCCTGATAATTTTTCGTGGAAGCCATCAAAGTAGTTGAAGCTAAGGTAATCTTAAGCCGAGCAGTGGGCTTTTGGAAATTGTACATGCTTTTCTCCTATTTTCTTTACTCTAGTTTTCATCTTTTTCAAG

Coding sequence (CDS)

ATGAAGTTCATTATGGAGTTTGCTGAGGATTTGGTATTGAGACTTATGGAGGATCCAAAAGAGAGAGATCGCAGATTCAGAGAGCATATTTATGCGATCAAGGATCGGTGCCAAAAGACAAAGGAGATGTGGAGCTATCCTCTTCGTCCTTATGGATTTTGGACGTTTGACCGCCACAATTCTCAGCTGAAGTGGGACCCACAAATTAGTCAAGTTCCTGGTAGGAGGGATCCTTATGATGATATGCTTCAGGACTTCAACAATAGCTCAAAGTGA

Protein sequence

MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHNSQLKWDPQISQVPGRRDPYDDMLQDFNNSSK*
Homology
BLAST of CSPI05G21430 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

BLAST of CSPI05G21430 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

BLAST of CSPI05G21430 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.2e-42
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKF+MEFAE+LV+RLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQL+WD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

BLAST of CSPI05G21430 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
           QL+WD QISQVPGRRDPYDD+L D NN+SK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

BLAST of CSPI05G21430 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
           QL+WD QISQVPGRRDPYDD+L D NN+SK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

BLAST of CSPI05G21430 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

BLAST of CSPI05G21430 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1   MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
           MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN
Sbjct: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105

Query: 61  SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
           SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK
Sbjct: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136

BLAST of CSPI05G21430 vs. NCBI nr
Match: XP_008446038.1 (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >KAA0034194.1 uncharacterized protein E6C27_scaffold65G001900 [Cucumis melo var. makuwa] >TYK15726.1 uncharacterized protein E5676_scaffold35G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKFIMEFAEDLVLRLMEDPKERDRRFREH+YA+KDRCQKTKEMWS PLRPYGFWTFDRHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWDPQISQVPGRRDPYDD+LQDFNN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

BLAST of CSPI05G21430 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 7.1e-43
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKF+MEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQLKWD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

BLAST of CSPI05G21430 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 4.6e-42
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          MKF+MEFAE+LV+RLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 92
          SQL+WD QISQ PGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

BLAST of CSPI05G21430 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-36
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLME+P+ERDR+ REHIY + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQD 86
          +QL+WDPQISQV GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

BLAST of CSPI05G21430 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-36
Identity = 64/85 (75.29%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60
          M FIMEFAE+LVLRLME+P+ERDR+ REHIY + +RC+K KEMW+ P+RPYGFWTF+RHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLKWDPQISQVPGRRDPYDDMLQD 86
          +QL+WDPQISQV GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BE411.3e-4594.51uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=... [more]
A0A5A7SSK11.3e-4594.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DD922.2e-4286.81uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1K9071.1e-4185.71uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347... [more]
A0A6J1GWE21.1e-4185.71uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
Match NameE-valueIdentityDescription
XP_011655561.13.6e-47100.00uncharacterized protein LOC101213251 [Cucumis sativus][more]
KAE8648679.13.6e-47100.00hypothetical protein Csa_008887 [Cucumis sativus][more]
XP_008446038.12.6e-4594.51PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 P... [more]
XP_038891434.17.1e-4389.01uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara... [more]
XP_022151828.14.6e-4286.81uncharacterized protein LOC111019716 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G67350.12.3e-3675.29unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter... [more]
AT1G67350.22.3e-3675.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035204NADH-ubiquinone oxidoreductase 11kDa subunitPFAMPF17250NDUFB11coord: 33..117
e-value: 2.5E-51
score: 172.2
IPR035204NADH-ubiquinone oxidoreductase 11kDa subunitPANTHERPTHR37709EXPRESSED PROTEINcoord: 33..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21430.1CSPI05G21430.1mRNA
CSPI05G21430.2CSPI05G21430.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005840 ribosome