CSPI05G21300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G21300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cytochrome oxidase assembly protein
Location	Chr5: 22100242 .. 22100430 (+)
RNA-Seq Expression	CSPI05G21300
Synteny	CSPI05G21300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

mRNA sequence

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

Coding sequence (CDS)

ATGGCTGGACTTTTGGGATTTAGTGGCCTTGGACCTAAGACAAAGAATATCGTTGTTGCCGGAGGTTTGACTGCATTTGTCTTCGGGGTATATTTCTACACCATGAGAGCAGTTGGAGGTTCGGATGAACTGCAAGTAGCCATTGACCAGTTTGAATCGCAGAAAAGAAACAAGGAATCGAATGTGTAG

Protein sequence

MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKESNV*

Homology

[Close]

BLAST of CSPI05G21300 vs. ExPASy TrEMBL
Match: A0A0A0KPU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES
Sbjct: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. ExPASy TrEMBL
Match: A0A5A7SUP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002370 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG+SGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FE+QK NKES
Sbjct: 1  MAGLLGYSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. ExPASy TrEMBL
Match: A0A1S4DW05 (uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG+SGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FE+QK NKES
Sbjct: 1  MAGLLGYSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. ExPASy TrEMBL
Match: A0A6J1KHY0 (uncharacterized protein LOC111493381 OS=Cucurbita maxima OX=3661 GN=LOC111493381 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG  GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+S
Sbjct: 1  MAGLLGLRGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. ExPASy TrEMBL
Match: A0A6J1GXM1 (uncharacterized protein LOC111458133 OS=Cucurbita moschata OX=3662 GN=LOC111458133 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG  GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+S
Sbjct: 1  MAGLLGLRGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: XP_011655556.1 (uncharacterized protein LOC105435556 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES
Sbjct: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: XP_016900171.1 (PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo] >KAA0034183.1 uncharacterized protein E6C27_scaffold65G001780 [Cucumis melo var. makuwa] >TYK15737.1 uncharacterized protein E5676_scaffold35G002370 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG+SGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAID+FE+QK NKES
Sbjct: 1  MAGLLGYSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDKFEAQKSNKES 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: XP_038891345.1 (uncharacterized protein LOC120080790 [Benincasa hispida] >XP_038891346.1 uncharacterized protein LOC120080790 [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG+ GLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK +K+S
Sbjct: 1  MAGLLGYRGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKSDKDS 60

Query: 61 N 62
          N
Sbjct: 61 N 61

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: XP_022956375.1 (uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 uncharacterized protein LOC111493381 [Cucurbita maxima] >XP_023522138.1 uncharacterized protein LOC111785987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG  GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+S
Sbjct: 1  MAGLLGLRGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. NCBI nr
Match: KAG6601607.1 (hypothetical protein SDJN03_06840, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKRNKES 60
          MAGLLG  GL PKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFE+QK NK+S
Sbjct: 1  MAGLLGLRGLAPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFEAQKDNKDS 60

Query: 61 NV 63
          NV
Sbjct: 61 NV 62

[Close]

BLAST of CSPI05G21300 vs. TAIR 10
Match: AT2G43780.1 (unknown protein; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 8.0e-20
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKR 57
          MAG  GFS LGPK KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK+
Sbjct: 1  MAGFPGFSYLGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQKQ 56

[Close]

BLAST of CSPI05G21300 vs. TAIR 10
Match: AT2G43780.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 8.0e-20
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MAGLLGFSGLGPKTKNIVVAGGLTAFVFGVYFYTMRAVGGSDELQVAIDQFESQKR 57
          MAG  GFS LGPK KN VVAGGLTAFVFGVYFYTMRAVGG+DELQVAID+FE QK+
Sbjct: 1  MAGFPGFSYLGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQKQ 56

The following BLAST results are available for this feature:

BLAST of CSPI05G21300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G21300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU8	6.4e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589280 PE=4 SV=1	[more]
A0A5A7SUP4	4.6e-23	93.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DW05	4.6e-23	93.55	uncharacterized protein LOC103488878 OS=Cucumis melo OX=3656 GN=LOC103488878 PE=...	[more]
A0A6J1KHY0	1.9e-21	90.32	uncharacterized protein LOC111493381 OS=Cucurbita maxima OX=3661 GN=LOC111493381...	[more]
A0A6J1GXM1	1.9e-21	90.32	uncharacterized protein LOC111458133 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]

BLAST of CSPI05G21300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655556.1	1.3e-24	100.00	uncharacterized protein LOC105435556 [Cucumis sativus]	[more]
XP_016900171.1	9.5e-23	93.55	PREDICTED: uncharacterized protein LOC103488878 [Cucumis melo] >KAA0034183.1 unc...	[more]
XP_038891345.1	3.0e-21	90.16	uncharacterized protein LOC120080790 [Benincasa hispida] >XP_038891346.1 unchara...	[more]
XP_022956375.1	4.0e-21	90.32	uncharacterized protein LOC111458133 [Cucurbita moschata] >XP_022998843.1 unchar...	[more]
KAG6601607.1	4.0e-21	90.32	hypothetical protein SDJN03_06840, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI05G21300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43780.1	8.0e-20	83.93	unknown protein; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bac...	[more]
AT2G43780.2	8.0e-20	83.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	PANTHER	PTHR36744	CYTOCHROME OXIDASE ASSEMBLY PROTEIN	coord: 1..61
None	No IPR available	PANTHER	PTHR36744:SF2	CYTOCHROME OXIDASE ASSEMBLY PROTEIN	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G21300.1	CSPI05G21300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity