CSPI05G20620 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G20620
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein, chloroplastic
LocationChr5: 21644894 .. 21645106 (-)
RNA-Seq ExpressionCSPI05G20620
SyntenyCSPI05G20620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGGACCTTCAATGGATCACTATGGGCACTATGGGCGCTATGGACGATCTTCCTGGTCGAGCTCGCAGGATCAAAGAAGCCTGGGATTTTATAGAAAACATGCCTATAGTCCAGGGTTTAGTGTATATGGTGCCATGTTGGGTGCTTGTAAAATTCACAAAAATGATGAATTGGGAGAGAAAGCAGCTAACAAATTGTTTGAGTTGA

mRNA sequence

ATGGACAAGGACCTTCAATGGATCACTATGGGCACTATGGGCGCTATGGACGATCTTCCTGGTCGAGCTCGCAGGATCAAAGAAGCCTGGGATTTTATAGAAAACATGCCTATAGTCCAGGGTTTAGTGTATATGGTGCCATGTTGGGTGCTTGTAAAATTCACAAAAATGATGAATTGGGAGAGAAAGCAGCTAACAAATTGTTTGAGTTGA

Coding sequence (CDS)

ATGGACAAGGACCTTCAATGGATCACTATGGGCACTATGGGCGCTATGGACGATCTTCCTGGTCGAGCTCGCAGGATCAAAGAAGCCTGGGATTTTATAGAAAACATGCCTATAGTCCAGGGTTTAGTGTATATGGTGCCATGTTGGGTGCTTGTAAAATTCACAAAAATGATGAATTGGGAGAGAAAGCAGCTAACAAATTGTTTGAGTTGA

Protein sequence

MDKDLQWITMGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCLS*
Homology
BLAST of CSPI05G20620 vs. ExPASy TrEMBL
Match: A0A438DMZ6 (Pentatricopeptide repeat-containing protein, chloroplastic OS=Vitis vinifera OX=29760 GN=PCMP-H40_9 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 10  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCL 69
           M   GAM DL GRA R+ EAWDFI+ MPI   +        L  FTKM++W R+Q T  L
Sbjct: 299 MDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGLAGFTKMLSWGRRQQTEYL 358

Query: 70  S 71
           +
Sbjct: 359 T 359

BLAST of CSPI05G20620 vs. NCBI nr
Match: RVW36829.1 (Pentatricopeptide repeat-containing protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 10  MGTMGAMDDLPGRARRIKEAWDFIENMPIVQGLVYMVPCWVLVKFTKMMNWERKQLTNCL 69
           M   GAM DL GRA R+ EAWDFI+ MPI   +        L  FTKM++W R+Q T  L
Sbjct: 299 MDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGLAGFTKMLSWGRRQQTEYL 358

Query: 70  S 71
           +
Sbjct: 359 T 359

BLAST of CSPI05G20620 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.1e-04
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 0

Query: 8   ITMGTMGAMDDLPGRARRIKEAWDFIENMPI 39
           ++M   GAM DL GRA R+ EAWDFI  MP+
Sbjct: 573 LSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438DMZ61.7e-0547.54Pentatricopeptide repeat-containing protein, chloroplastic OS=Vitis vinifera OX=... [more]
Match NameE-valueIdentityDescription
RVW36829.13.4e-0547.54Pentatricopeptide repeat-containing protein, chloroplastic [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT1G11290.13.1e-0458.06Pentatricopeptide repeat (PPR) superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G20620.1CSPI05G20620.1mRNA