CSPI05G20590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G20590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transcription termination factor MTERF5
Location	Chr5: 21630341 .. 21631598 (+)
RNA-Seq Expression	CSPI05G20590
Synteny	CSPI05G20590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTTTCCGCTTTCCACTATGTGAGGATGTTCGTTTCGTGGAGCTCAAAACCCTAACCAAAACCCTTCCTTCAATCTCTTCATTCTAATCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTTCATTTCATCCAAAAACGTTTTCTCAACACCATTTCTACTTCTACATTGCCTTTACCCTCTGTTTCTACCATCCAATTCCTCCAAAATTCATGTGGCCTTTCTTCAGGATCTCCTACCTCTGGCGGTCGAAAGCTCCAATTCGATGAACAAAACATCCAGAAGTACGGAGCCGTTATCGGTTTCTTGAAATCACATGCATTCGAGAATCCACAGATCGCCAACTTGGTCTCGAGGCGACCTTCGCTCCTTCAATCCAAAGTATCCACCAATCTGAAGCCAAAATTTGAGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTAGCAAACCCTTCAATTCTTCTCTGGAGCTTAGATTCTCATTTGAAACCATCATTTCGTCTCTTAAAGGAAATGGTTGAATCTGATGAACAAGTAACTGCTGCTATTTTTCGTTCTTCGTGGCTTCTAACTTTTAATTTCAAGAGTATTGTAAAACCTAATTTTGATGTTTTGGTCAGGAGTACCTTCTAGGAATATAGCGAAGTTGATCCAAGTGCAGCCTAGAGTTATTACGCAAAAGGTTGATAGATTGATTCAAGTTGTGCAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCTCGTTTGTTTATTCGTGCACTTAGAGTAATGAGTTCTTTGAGTGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAAGAACCAAAATATTTAGGTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTCTCAACACTGCAAAGTTGGATCCAGAAACTGTACTTTCTTACCCTGCGTTGTTCATGAGTGCACTGGACAAGCTCCGACCGAGGTACAAAGTTATTGAGGTTCTGAAGGTGAAAAATCTTCTTAAGAACAAAAAGATTGCTTGGTTGCTTTTAGAAAGGGAGAGAGAATTTGTGGAGAAATATATAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAAGGGCAATGTGGAAGCAGAAGCTGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATCTTCATCATGATCTTCT

mRNA sequence

AGGTTTTCCGCTTTCCACTATGTGAGGATGTTCGTTTCGTGGAGCTCAAAACCCTAACCAAAACCCTTCCTTCAATCTCTTCATTCTAATCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTTCATTTCATCCAAAAACGTTTTCTCAACACCATTTCTACTTCTACATTGCCTTTACCCTCTGTTTCTACCATCCAATTCCTCCAAAATTCATGTGGCCTTTCTTCAGGATCTCCTACCTCTGGCGGTCGAAAGCTCCAATTCGATGAACAAAACATCCAGAAGTACGGAGCCGTTATCGGTTTCTTGAAATCACATGCATTCGAGAATCCACAGATCGCCAACTTGGTCTCGAGGCGACCTTCGCTCCTTCAATCCAAAGTATCCACCAATCTGAAGCCAAAATTTGAGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTAGCAAACCCTTCAATTCTTCTCTGGAGCTTAGATTCTCATTTGAAACCATCATTTCGTCTCTTAAAGGAAATGGTTGAATCTGATGAACAAGTAACTGCTGCTATTTTTCGTTCTTCGTGGCTTCTAACTTTTAATTTCAAGAGTATTGTAAAACCTAATTTTGATGTTTTGGTCAGGAGTACCTTCTAGGAATATAGCGAAGTTGATCCAAGTGCAGCCTAGAGTTATTACGCAAAAGGTTGATAGATTGATTCAAGTTGTGCAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCTCGTTTGTTTATTCGTGCACTTAGAGTAATGAGTTCTTTGAGTGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAAGAACCAAAATATTTAGGTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTCTCAACACTGCAAAGTTGGATCCAGAAACTGTACTTTCTTACCCTGCGTTGTTCATGAGTGCACTGGACAAGCTCCGACCGAGGTACAAAGTTATTGAGGTTCTGAAGGTGAAAAATCTTCTTAAGAACAAAAAGATTGCTTGGTTGCTTTTAGAAAGGGAGAGAGAATTTGTGGAGAAATATATAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAAGGGCAATGTGGAAGCAGAAGCTGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATCTTCATCATGATCTTCT

Coding sequence (CDS)

ATGTTTTGGTCAGGAGTACCTTCTAGGAATATAGCGAAGTTGATCCAAGTGCAGCCTAGAGTTATTACGCAAAAGGTTGATAGATTGATTCAAGTTGTGCAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCTCGTTTGTTTATTCGTGCACTTAGAGTAATGAGTTCTTTGAGTGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAAGAACCAAAATATTTAGGTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTCTCAACACTGCAAAGTTGGATCCAGAAACTGTACTTTCTTACCCTGCGTTGTTCATGAGTGCACTGGACAAGCTCCGACCGAGGTACAAAGTTATTGAGGTTCTGAAGGTGAAAAATCTTCTTAAGAACAAAAAGATTGCTTGGTTGCTTTTAGAAAGGGAGAGAGAATTTGTGGAGAAATATATAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAAGGGCAATGTGGAAGCAGAAGCTGAAACCAAAAGTGTTGTATAG

Protein sequence

MFWSGVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWKKKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFMSALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKGNVEAEAETKSVV*

Homology

[Close]

BLAST of CSPI05G20590 vs. ExPASy TrEMBL
Match: A0A5A7SXV5 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003270 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 147/191 (76.96%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           G+ SR+IAKLI  +PR I QKVDR+IQVV+ VKELGIEPK+ +F+RAL++  S+SDS WK
Sbjct: 144 GIASRSIAKLIVKEPRTIMQKVDRMIQVVKMVKELGIEPKSGMFVRALKIRCSMSDSNWK 203

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWSEKEI TAFKKEPKYLGCSEEK+RDVADFC NTAKLDPETV+SYP LFM
Sbjct: 204 KKINVMKSLGWSEKEIFTAFKKEPKYLGCSEEKLRDVADFCFNTAKLDPETVISYPTLFM 263

Query: 125 SALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKGN 184
           SALDKLRPRYKV+EVLKVK+LLKN KI  +L+  EREFVEKY+VKHL+EIPNLMDIY+GN
Sbjct: 264 SALDKLRPRYKVLEVLKVKSLLKNIKIPRMLVGGEREFVEKYVVKHLNEIPNLMDIYRGN 323

Query: 185 VEAEAETKSVV 196
           V     TKSV+
Sbjct: 324 V--TTGTKSVL 332

[Close]

BLAST of CSPI05G20590 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 147/192 (76.56%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNI+++I +QPR I QKVDRLI  V+TVKELGIEPKAR F+ A+ V  S+SDSTWK
Sbjct: 184 GVPSRNISRMISLQPRAIMQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWS+KEI TAFK+ P YLGCSEEK+RDVADFC NTAKLDP T++SYP LF 
Sbjct: 244 KKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFK 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
            + DK LRPRYKV+EVLKVKNLLKNKKIA +L+E ER FVEKY+VKHLDEIPNLMDIY G
Sbjct: 304 LSFDKRLRPRYKVLEVLKVKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVG 363

Query: 185 NVEAEAETKSVV 196
           NV  EAETKSV+
Sbjct: 364 NV--EAETKSVL 373

[Close]

BLAST of CSPI05G20590 vs. ExPASy TrEMBL
Match: A0A5A7SW09 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001070 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 147/192 (76.56%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNI+++I +QPR I QKVDRLI  V+TVKELGIEPKAR F+ A+ V  S+SDSTWK
Sbjct: 184 GVPSRNISRMISLQPRAIMQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWS+KEI TAFK+ P YLGCSEEK+RDVADFC NTAKLDP T++SYP LF 
Sbjct: 244 KKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFK 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
            + DK LRPRYKV+EVLKVKNLLKNKKIA +L+E ER FVEKY+VKHLDEIPNLMDIY G
Sbjct: 304 LSFDKRLRPRYKVLEVLKVKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVG 363

Query: 185 NVEAEAETKSVV 196
           NV  EAETKSV+
Sbjct: 364 NV--EAETKSVL 373

[Close]

BLAST of CSPI05G20590 vs. ExPASy TrEMBL
Match: A0A1S3BDE1 (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 147/192 (76.56%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNI+++I +QPR I QKVDRLI  V+TVKELGIEPKAR F+ A+ V  S+SDSTWK
Sbjct: 184 GVPSRNISRMISLQPRAIMQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWS+KEI TAFK+ P YLGCSEEK+RDVADFC NTAKLDP T++SYP LF 
Sbjct: 244 KKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFK 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
            + DK LRPRYKV+EVLKVKNLLKNKKIA +L+E ER FVEKY+VKHLDEIPNLMDIY G
Sbjct: 304 LSFDKRLRPRYKVLEVLKVKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVG 363

Query: 185 NVEAEAETKSVV 196
           NV  EAETKSV+
Sbjct: 364 NV--EAETKSVL 373

[Close]

BLAST of CSPI05G20590 vs. ExPASy TrEMBL
Match: A0A5D3CWR8 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003140 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.7e-72
Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNIAK+I++ PR + QKVDR+IQVV+ VKELGIEPK R F+ A+R+  SLSDSTWK
Sbjct: 184 GVPSRNIAKMIEMDPRTVMQKVDRMIQVVKKVKELGIEPKTRKFVHAIRIRGSLSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWSE EILTAFKK+P YL CSEEK+RDV DFCLNTAKLDPETV+SYP LFM
Sbjct: 244 KKINVMKSLGWSENEILTAFKKDPNYLSCSEEKLRDVTDFCLNTAKLDPETVISYPTLFM 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNK-KIAWLLLEREREFVEKYIVKHLDEIPNLMDIYK 184
           SALDK LRPR+K++E LKVK+LLKN  KI   L+  EREFVE+Y+VKHLD+IPNLMDIY+
Sbjct: 304 SALDKRLRPRFKILEALKVKSLLKNNIKIPRALVRGEREFVERYVVKHLDKIPNLMDIYR 363

Query: 185 GNVEAEAETKSVV 196
           GNV    ETKSV+
Sbjct: 364 GNV--ATETKSVL 374

[Close]

BLAST of CSPI05G20590 vs. NCBI nr
Match: XP_031741173.1 (uncharacterized protein LOC101219984 [Cucumis sativus] >KAE8648634.1 hypothetical protein Csa_007862 [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 2.1e-97
Identity = 189/191 (98.95%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRN+AKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK
Sbjct: 184 GVPSRNLAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM
Sbjct: 244 KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 303

Query: 125 SALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKGN 184
           SALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIY+GN
Sbjct: 304 SALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYRGN 363

Query: 185 VEAEAETKSVV 196
           VEAEAETKSVV
Sbjct: 364 VEAEAETKSVV 374

[Close]

BLAST of CSPI05G20590 vs. NCBI nr
Match: XP_031741758.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus] >KAE8648638.1 hypothetical protein Csa_008093 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 7.9e-76
Identity = 149/192 (77.60%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPS+NIA++I  +P  I  KVDR+I VV+ VKELG EPKAR+F+ A+    S+SDSTWK
Sbjct: 184 GVPSKNIARMIAYKPATIMHKVDRMIDVVKRVKELGFEPKARMFVYAVLARISMSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           +KINV+KSLGWSEKEILTAFKK+P YL CSE+KMRDVADFC NTAKLDP TV+ YP  F 
Sbjct: 244 RKINVLKSLGWSEKEILTAFKKDPNYLSCSEDKMRDVADFCFNTAKLDPGTVICYPKFFK 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
            ++DK L+PRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG
Sbjct: 304 FSVDKRLQPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 363

Query: 185 NVEAEAETKSVV 196
           NVE EAETKSVV
Sbjct: 364 NVETEAETKSVV 375

[Close]

BLAST of CSPI05G20590 vs. NCBI nr
Match: XP_011655506.2 (transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus] >KAE8648626.1 hypothetical protein Csa_008456 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-75
Identity = 155/192 (80.73%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNIAKLIQVQPR + QKVDR IQVVQTVKELGIEPKARLFI ALRV SSLSDS WK
Sbjct: 184 GVPSRNIAKLIQVQPRAVMQKVDRFIQVVQTVKELGIEPKARLFIHALRVRSSLSDSNWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINV+KSLG SEKEILTAFKKEPKYL CSEEK+RDVADFC NTAKLDPETV+SYP +FM
Sbjct: 244 KKINVLKSLGLSEKEILTAFKKEPKYLACSEEKIRDVADFCFNTAKLDPETVISYPTIFM 303

Query: 125 SALDKLRPRYKVIEVLKVKNLLKNKKI-AWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
           SALDKLR RYKV+E LKVK+LLKN KI    L+  ER+F+E Y+VKHLD+IPNLMDIY+G
Sbjct: 304 SALDKLRQRYKVLEALKVKSLLKNVKILPRALVRAERDFMEMYVVKHLDKIPNLMDIYRG 363

Query: 185 NVEAEAETKSVV 196
           NV   AETKSV+
Sbjct: 364 NV--AAETKSVL 373

[Close]

BLAST of CSPI05G20590 vs. NCBI nr
Match: KAA0034097.1 (transcription termination factor MTERF5 [Cucumis melo var. makuwa] >TYK15822.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 7.4e-74
Identity = 147/191 (76.96%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           G+ SR+IAKLI  +PR I QKVDR+IQVV+ VKELGIEPK+ +F+RAL++  S+SDS WK
Sbjct: 144 GIASRSIAKLIVKEPRTIMQKVDRMIQVVKMVKELGIEPKSGMFVRALKIRCSMSDSNWK 203

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWSEKEI TAFKKEPKYLGCSEEK+RDVADFC NTAKLDPETV+SYP LFM
Sbjct: 204 KKINVMKSLGWSEKEIFTAFKKEPKYLGCSEEKLRDVADFCFNTAKLDPETVISYPTLFM 263

Query: 125 SALDKLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKGN 184
           SALDKLRPRYKV+EVLKVK+LLKN KI  +L+  EREFVEKY+VKHL+EIPNLMDIY+GN
Sbjct: 264 SALDKLRPRYKVLEVLKVKSLLKNIKIPRMLVGGEREFVEKYVVKHLNEIPNLMDIYRGN 323

Query: 185 VEAEAETKSVV 196
           V     TKSV+
Sbjct: 324 V--TTGTKSVL 332

[Close]

BLAST of CSPI05G20590 vs. NCBI nr
Match: KAA0034116.1 (transcription termination factor MTERF2 [Cucumis melo var. makuwa])

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-72
Identity = 147/192 (76.56%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVPSRNI+++I +QPR I QKVDRLI  V+TVKELGIEPKAR F+ A+ V  S+SDSTWK
Sbjct: 184 GVPSRNISRMISLQPRAIMQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWK 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           KKINVMKSLGWS+KEI TAFK+ P YLGCSEEK+RDVADFC NTAKLDP T++SYP LF 
Sbjct: 244 KKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFK 303

Query: 125 SALDK-LRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDIYKG 184
            + DK LRPRYKV+EVLKVKNLLKNKKIA +L+E ER FVEKY+VKHLDEIPNLMDIY G
Sbjct: 304 LSFDKRLRPRYKVLEVLKVKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVG 363

Query: 185 NVEAEAETKSVV 196
           NV  EAETKSV+
Sbjct: 364 NV--EAETKSVL 373

[Close]

BLAST of CSPI05G20590 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-19
Identity = 57/183 (31.15%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 4   SGVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSD-ST 63
           +GVP + I  L+   P  + QK      + +  +E+G  P+   F+ A+  +S   + S 
Sbjct: 219 TGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSI 278

Query: 64  WKKKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYP-A 123
           W K   V +  GWSE +I+ AFKK P  +  SE K+    ++ +N   + P ++   P  
Sbjct: 279 WDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVV 338

Query: 124 LFMSALDKLRPRYKVIEVLKVKNLLKNK-KIAWLLLEREREFVEKYIVKHLDEIPNLMDI 183
           LF S   ++ PR  V +VL    L+K    +  LL+  E+ F+EK ++K+ +E+P LM++
Sbjct: 339 LFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNL 398

[Close]

BLAST of CSPI05G20590 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-17
Identity = 57/185 (30.81%), Postives = 99/185 (53.51%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           G+    +A L++ QPR+     ++L   V    +LG    +R+ + A+  +SSLS+ T+ 
Sbjct: 192 GIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFD 251

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPALFM 124
           +K+ +  + G+SE EI    ++ P  + CSE+K+    +F L    L+ E +   P +  
Sbjct: 252 RKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLS 311

Query: 125 SALDK-LRPRYKVIEVLKVKNLL-----KNKKIAWLLLEREREFVEKYIVKHLDEI-PNL 183
             L+K + PR KV+++L+ K LL     K K +  ++   E  F+EKY+V+  DEI   L
Sbjct: 312 YNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEEL 371

[Close]

BLAST of CSPI05G20590 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-11
Identity = 54/220 (24.55%), Postives = 109/220 (49.55%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           G+P + +  L+    + +  K ++  + ++ V E+G +P    F+ AL+V+  +++ T +
Sbjct: 200 GMPHKLLFSLLISDSQPVCGK-EKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIE 259

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRD------------------------ 124
           +K+++ KSLG+   ++ ++FKK P  L  SE+KM D                        
Sbjct: 260 EKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPP 319

Query: 125 -----------VADFCLNTAKLDPETVLSYPALFMSALDK-LRPRYKVIEVLKVKNLLKN 184
                        +F +       + V+S PA+F  +L+K + PR  VI+ L  K L++N
Sbjct: 320 CIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRN 379

[Close]

BLAST of CSPI05G20590 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-11
Identity = 54/220 (24.55%), Postives = 109/220 (49.55%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           G+P + +  L+    + +  K ++  + ++ V E+G +P    F+ AL+V+  +++ T +
Sbjct: 200 GMPHKLLFSLLISDSQPVCGK-EKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIE 259

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRD------------------------ 124
           +K+++ KSLG+   ++ ++FKK P  L  SE+KM D                        
Sbjct: 260 EKVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPP 319

Query: 125 -----------VADFCLNTAKLDPETVLSYPALFMSALDK-LRPRYKVIEVLKVKNLLKN 184
                        +F +       + V+S PA+F  +L+K + PR  VI+ L  K L++N
Sbjct: 320 CIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRN 379

[Close]

BLAST of CSPI05G20590 vs. TAIR 10
Match: AT1G62010.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-10
Identity = 58/220 (26.36%), Postives = 102/220 (46.36%), Query Frame = 0


Query: 5   GVPSRNIAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDSTWK 64
           GVP + +  L+  + + +  K ++    ++ V E+G +P    F+ AL ++  +SD T +
Sbjct: 184 GVPQKRLLLLLISKSQPVCGK-EKFDASLKKVVEMGFDPTTSTFVHALHMLYQMSDKTIE 243

Query: 65  KKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKM-------------RDV---------- 124
           +KI V +S+G+S  ++   FKK P+ L  SE+K+             RDV          
Sbjct: 244 EKIRVYRSVGFSVDDVWAMFKKWPRSLTHSEKKVANSIETFLGLGFSRDVFMMMFKRFPP 303

Query: 125 ------------ADFCLNTAKLDPETVLSYPALFMSALDKLR-PRYKVIEVLKVKNLLKN 184
                        +F +       + V S P +   +L+K   PR  VI+VL  K LL++
Sbjct: 304 CIGYSTEAVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVPRCNVIKVLMSKGLLES 363

The following BLAST results are available for this feature:

BLAST of CSPI05G20590 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G20590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXV5	3.6e-74	76.96	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CXX8	1.2e-72	76.56	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SW09	1.2e-72	76.56	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BDE1	1.2e-72	76.56	transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5D3CWR8	5.7e-72	74.61	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CSPI05G20590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741173.1	2.1e-97	98.95	uncharacterized protein LOC101219984 [Cucumis sativus] >KAE8648634.1 hypothetica...	[more]
XP_031741758.1	7.9e-76	77.60	transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus] >K...	[more]
XP_011655506.2	3.0e-75	80.73	transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus] >K...	[more]
KAA0034097.1	7.4e-74	76.96	transcription termination factor MTERF5 [Cucumis melo var. makuwa] >TYK15822.1 t...	[more]
KAA0034116.1	2.4e-72	76.56	transcription termination factor MTERF2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G20590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	1.5e-19	31.15	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	4.0e-17	30.81	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	2.5e-11	24.55	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	2.5e-11	24.55	Mitochondrial transcription termination factor family protein	[more]
AT1G62010.1	4.7e-10	26.36	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 46..76 e-value: 130.0 score: 10.8 coord: 12..42 e-value: 0.62 score: 19.1 coord: 113..143 e-value: 100.0 score: 11.5 coord: 81..112 e-value: 30.0 score: 13.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 5..162 e-value: 1.6E-17 score: 63.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..185
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 4..176 e-value: 2.0E-34 score: 121.0
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 2..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G20590.1	CSPI05G20590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding