CSPI05G20560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G20560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	GDSL esterase/lipase
Location	Chr5: 21608526 .. 21609408 (-)
RNA-Seq Expression	CSPI05G20560
Synteny	CSPI05G20560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAACACATCTCCTTTACACAACAAATTCAGCAATTATATTTATGGACACTTTTCAGCAGTTTGTTCCACATATGCGCGAGAAGGCTGCTGCCGATCACATTCCAATTCAGTCCTTTACATATCAATTGGAATTAACGATTACATTCATTACTATCTTTTTAATATATCCAATGTTCAAAATCTTTACCCTCCATGGAATTTTAACCAATTTCTTGCAGCCACAATCAGACAGGAAATCAAGGTGATTTTATTGTTTATAGTTTTTGCTATGCTACATAATGGAAAAAAGTATATGCATACATTACCCATTATGCAATCTCTTTGCCTTCGGGATATTGTTGTTGTGCACATATTTTCATTTTCCAAAGTTGGAGCTTTTGGATTATTTTAGATATTGGAAACTAACCATGCATTATACTGTAAGCCCTGCATAGAAGTTTCGTTTATTTCCACTGTATTAATTTACCAATTGTTCAAATACTTCCTAAAAGGCTTTGTGTTGATGGTCCAGAATTTGTATTACATGAATGCTAGGAGAATCTTTGTAATGGGATTGGCACCTATTGGCTGTGCTCCTTTCTACCTATGACAGTACCGTGATGAGAATGCAGCGTGTACTGAGGAGATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACATGGTCAAGGAGCTCGGCACAGAGCTGCACGATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGATTCGAATTGGACATCTTCATGTCGAGCTCTTTGACGATGTATCTCATGACAATGTGTCCAATTGGATAATCGTATTGTTTATCTCTTCAATACACGC

mRNA sequence

GGCCAACACATCTCCTTTACACAACAAATTCAGCAATTATATTTATGGACACTTTTCAGCAGTTTGTTCCACATATGCGCGAGAAGGCTGCTGCCGATCACATTCCAATTCAGTCCTTTACATATCAATTGGAATTAACGATTACATTCATTACTATCTTTTTAATATATCCAATGTTCAAAATCTTTACCCTCCATGGAATTTTAACCAATTTCTTGCAGCCACAATCAGACAGGAAATCAAGTACCGTGATGAGAATGCAGCGTGTACTGAGGAGATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACATGGTCAAGGAGCTCGGCACAGAGCTGCACGATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGATTCGAATTGGACATCTTCATGTCGAGCTCTTTGACGATGTATCTCATGACAATGTGTCCAATTGGATAATCGTATTGTTTATCTCTTCAATACACGC

Coding sequence (CDS)

GCCAACACATCTCCTTTACACAACAAATTCAGCAATTATATTTATGGACACTTTTCAGCAGTTTGTTCCACATATGCGCGAGAAGGCTGCTGCCGATCACATTCCAATTCAGTCCTTTACATATCAATTGGAATTAACGATTACATTCATTACTATCTTTTTAATATATCCAATGTTCAAAATCTTTACCCTCCATGGAATTTTAACCAATTTCTTGCAGCCACAATCAGACAGGAAATCAAGTACCGTGATGAGAATGCAGCGTGTACTGAGGAGATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACATGGTCAAGGAGCTCGGCACAGAGCTGCACGATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGATTCGAATTGGACATCTTCATGTCGAGCTCTTTGA

Protein sequence

ANTSPLHNKFSNYIYGHFSAVCSTYAREGCCRSHSNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIKYRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLRVSMDILKDHICVLQGSMDSNWTSSCRAL*

Homology

[Close]

BLAST of CSPI05G20560 vs. ExPASy TrEMBL
Match: A0A5A7UZU1 (GDSL esterase/lipase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00560 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.6e-38
Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNL+PPWNFNQFLAATIRQEIK             
Sbjct: 198 SNSVFYISIGINDYIHYYLFNISNVQNLFPPWNFNQFLAATIRQEIKNLYNMNARRIVVM 257

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         YR EN AC EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL 
Sbjct: 258 GLAPIGCAPFYLWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLE 317

[Close]

BLAST of CSPI05G20560 vs. ExPASy TrEMBL
Match: A0A1S3BSQ9 (GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.6e-38
Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNL+PPWNFNQFLAATIRQEIK             
Sbjct: 198 SNSVFYISIGINDYIHYYLFNISNVQNLFPPWNFNQFLAATIRQEIKNLYNMNARRIVVM 257

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         YR EN AC EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL 
Sbjct: 258 GLAPIGCAPFYLWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLE 317

[Close]

BLAST of CSPI05G20560 vs. ExPASy TrEMBL
Match: A0A0A0L7F0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.8e-37
Identity = 86/129 (66.67%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNLYPPWNFNQFLA TIRQEIK             
Sbjct: 196 SNSVFYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAVTIRQEIKNLYNMNARRIVVM 255

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         YR EN AC EEINDMV+EFNF+MRY+V+ELG EL DS+II CDLL+
Sbjct: 256 GLAPIGCAPFYLWQYRSENGACIEEINDMVMEFNFAMRYVVEELGMELPDSNIIFCDLLQ 315

[Close]

BLAST of CSPI05G20560 vs. ExPASy TrEMBL
Match: A0A6J1C4U4 (GDSL esterase/lipase At1g71691 OS=Momordica charantia OX=3673 GN=LOC111008376 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 85/129 (65.89%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNIS+VQNLY PWNFNQFLAATIRQEIK             
Sbjct: 192 SNSVFYISIGINDYIHYYLFNISSVQNLYSPWNFNQFLAATIRQEIKNLYNMNARRIVIM 251

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         Y  EN  C EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL 
Sbjct: 252 GLAPIGCAPFYLWQYGSENGECIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLE 311

[Close]

BLAST of CSPI05G20560 vs. ExPASy TrEMBL
Match: A0A6J1EZA3 (GDSL esterase/lipase At1g71691 OS=Cucurbita moschata OX=3662 GN=LOC111437583 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.4e-34
Identity = 81/129 (62.79%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           S+SV YISIGINDYIHYYLFNIS VQNLYPPWNFNQFLA TI+QEIK             
Sbjct: 192 SDSVFYISIGINDYIHYYLFNISRVQNLYPPWNFNQFLATTIKQEIKNLYNMNARRIVVM 251

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         Y  EN  C EEINDMV+EFNF+MRY+V+ELG EL D SII CDLL+
Sbjct: 252 GLAPIGCAPFYLWQYGSENGECIEEINDMVMEFNFAMRYIVEELGMELPDLSIIFCDLLQ 311

[Close]

BLAST of CSPI05G20560 vs. NCBI nr
Match: XP_008452220.1 (PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo] >KAA0060544.1 GDSL esterase/lipase [Cucumis melo var. makuwa] >TYK00787.1 GDSL esterase/lipase [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNL+PPWNFNQFLAATIRQEIK             
Sbjct: 198 SNSVFYISIGINDYIHYYLFNISNVQNLFPPWNFNQFLAATIRQEIKNLYNMNARRIVVM 257

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         YR EN AC EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL 
Sbjct: 258 GLAPIGCAPFYLWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLE 317

[Close]

BLAST of CSPI05G20560 vs. NCBI nr
Match: XP_004145656.2 (GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothetical protein Csa_010616 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 5.7e-37
Identity = 86/129 (66.67%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNLYPPWNFNQFLA TIRQEIK             
Sbjct: 196 SNSVFYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAVTIRQEIKNLYNMNARRIVVM 255

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         YR EN AC EEINDMV+EFNF+MRY+V+ELG EL DS+II CDLL+
Sbjct: 256 GLAPIGCAPFYLWQYRSENGACIEEINDMVMEFNFAMRYVVEELGMELPDSNIIFCDLLQ 315

[Close]

BLAST of CSPI05G20560 vs. NCBI nr
Match: XP_038904573.1 (GDSL esterase/lipase At1g71691 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 7.5e-37
Identity = 87/129 (67.44%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK             
Sbjct: 193 SNSVFYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIKNLYNMNARRIVVM 252

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         Y  EN  C EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL+
Sbjct: 253 GLAPIGCAPFYLWQYGSENGECIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLQ 312

[Close]

BLAST of CSPI05G20560 vs. NCBI nr
Match: XP_022136745.1 (GDSL esterase/lipase At1g71691 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-35
Identity = 85/129 (65.89%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           SNSV YISIGINDYIHYYLFNIS+VQNLY PWNFNQFLAATIRQEIK             
Sbjct: 192 SNSVFYISIGINDYIHYYLFNISSVQNLYSPWNFNQFLAATIRQEIKNLYNMNARRIVIM 251

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         Y  EN  C EEINDMV+EFNF+MRYMV+ELG EL DSSII CDLL 
Sbjct: 252 GLAPIGCAPFYLWQYGSENGECIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLE 311

[Close]

BLAST of CSPI05G20560 vs. NCBI nr
Match: XP_023552224.1 (GDSL esterase/lipase At1g71691 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 81/129 (62.79%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEIK------------- 94
           S+SV YISIGINDYIHYYLFNIS VQNLYPPWNFNQFLA TI+QEIK             
Sbjct: 192 SDSVFYISIGINDYIHYYLFNISRVQNLYPPWNFNQFLATTIKQEIKNLYNMNARRIVVM 251

Query: 95  --------------YRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                         Y  EN  C EEINDMV+EFNF+MRY+V+ELG EL D SII CDLL+
Sbjct: 252 GLAPIGCAPFYLWQYGSENGECIEEINDMVMEFNFAMRYIVEELGMELPDLSIIFCDLLQ 311

[Close]

BLAST of CSPI05G20560 vs. TAIR 10
Match: AT4G10950.1 (SGNH hydrolase-type esterase superfamily protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.3e-30
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 35  SNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQEI-------------- 94
           SNSV YISIG+NDYIH+Y+ NISNVQNLY PWNFNQFLA+ +RQE+              
Sbjct: 195 SNSVFYISIGVNDYIHFYIRNISNVQNLYTPWNFNQFLASNMRQELKTLYNVKVRRMVVM 254

Query: 95  -------------KYRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 137
                        KYR +N  C EE+N M++E NF MRY V +L  EL  +SII CD+ +
Sbjct: 255 GLPPIGCAPYYMWKYRSQNGECAEEVNSMIMESNFVMRYTVDKLNRELPGASIIYCDVFQ 314

[Close]

BLAST of CSPI05G20560 vs. TAIR 10
Match: AT1G71691.2 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 31/138 (22.46%), Postives = 55/138 (39.86%), Query Frame = 0


Query: 33  SHSNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQE------------- 92
           S + S+ +I +G NDY++ YL      +N Y    F   L      +             
Sbjct: 179 SVTRSLFFIGMGSNDYLNNYLMPNFPTRNQYNSQQFGDLLVQHYTDQLTRLYNLGGRKFV 238

Query: 93  ------------IKYRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 146
                       I  +  +  C+EE+N +V+ FN +++ M+  L   L D+  I  D+  
Sbjct: 239 VAGLGRMGCIPSILAQGNDGKCSEEVNQLVLPFNTNVKTMISNLNQNLPDAKFIYLDIAH 298

[Close]

BLAST of CSPI05G20560 vs. TAIR 10
Match: AT1G71691.1 (GDSL-like Lipase/Acylhydrolase superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 31/138 (22.46%), Postives = 55/138 (39.86%), Query Frame = 0


Query: 33  SHSNSVLYISIGINDYIHYYLFNISNVQNLYPPWNFNQFLAATIRQE------------- 92
           S + S+ +I +G NDY++ YL      +N Y    F   L      +             
Sbjct: 78  SVTRSLFFIGMGSNDYLNNYLMPNFPTRNQYNSQQFGDLLVQHYTDQLTRLYNLGGRKFV 137

Query: 93  ------------IKYRDENAACTEEINDMVIEFNFSMRYMVKELGTELHDSSIILCDLLR 146
                       I  +  +  C+EE+N +V+ FN +++ M+  L   L D+  I  D+  
Sbjct: 138 VAGLGRMGCIPSILAQGNDGKCSEEVNQLVLPFNTNVKTMISNLNQNLPDAKFIYLDIAH 197

The following BLAST results are available for this feature:

BLAST of CSPI05G20560 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G20560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZU1	5.6e-38	68.22	GDSL esterase/lipase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420...	[more]
A0A1S3BSQ9	5.6e-38	68.22	GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3...	[more]
A0A0A0L7F0	2.8e-37	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1	[more]
A0A6J1C4U4	1.5e-35	65.89	GDSL esterase/lipase At1g71691 OS=Momordica charantia OX=3673 GN=LOC111008376 PE...	[more]
A0A6J1EZA3	6.4e-34	62.79	GDSL esterase/lipase At1g71691 OS=Cucurbita moschata OX=3662 GN=LOC111437583 PE=...	[more]

BLAST of CSPI05G20560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452220.1	1.2e-37	68.22	PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo] >KAA0060544.1 GDSL...	[more]
XP_004145656.2	5.7e-37	66.67	GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothetical protei...	[more]
XP_038904573.1	7.5e-37	67.44	GDSL esterase/lipase At1g71691 [Benincasa hispida]	[more]
XP_022136745.1	3.2e-35	65.89	GDSL esterase/lipase At1g71691 [Momordica charantia]	[more]
XP_023552224.1	1.3e-33	62.79	GDSL esterase/lipase At1g71691 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI05G20560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10950.1	3.3e-30	50.39	SGNH hydrolase-type esterase superfamily protein	[more]
AT1G71691.2	2.4e-04	22.46	GDSL-like Lipase/Acylhydrolase superfamily protein	[more]
AT1G71691.1	2.4e-04	22.46	GDSL-like Lipase/Acylhydrolase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45648	GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700)	coord: 81..136 coord: 15..81
None	No IPR available	PANTHER	PTHR45648:SF13	OS02G0290900 PROTEIN	coord: 81..136 coord: 15..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G20560.1	CSPI05G20560.1	mRNA