CSPI05G18890 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G18890
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCysteine-rich RLK (RECEPTOR-like protein kinase) 8
LocationChr5: 20060723 .. 20061184 (+)
RNA-Seq ExpressionCSPI05G18890
SyntenyCSPI05G18890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATCATTAGTCGTCTTCTCCCCCATATTCTTTTATTACGTCTCTTGCTTCCACATCTATTCCTAACACTGTTTAGGAAACTTTATCTCATCCTGTTTGGCATAGTGCAATGATTGAGGAGATGACTGTTTTAGATGATAATGGTACTTGGGATTTAGTATCTTGCTTTGCAGAAAAGAAGGCCATTGGATGTAAATGGGTGTTCGCTATCAAGGTTGATCATGATGGAGCAATGCCTTGGTTGAGTGTTGTGTTTGTCTTGTTGCGAAAGGTTATGTCCAAATCTATGAAATTGATTATTCAAATACATTTTCTCCCGACTTTTTTTTTCATGGCTGCTACCCATGATTGGCCTTTACATGAGTTTGACATACATGAGCTTGACATCAAGAATGCTTTTCTACATGGTGATCTTTAGGAGGAGGTTTATATGGAGTAGCCACCTTTGTTGCTTAGGGGGAG

mRNA sequence

ATATCATTAGTCGTCTTCTCCCCCATATTCTTTTATTACGTCTCTTGCTTCCACATCTATTCCTAACACTGTTTAGGAAACTTTATCTCATCCTGTTTGGCATAGTGCAATGATTGAGGAGATGACTGTTTTAGATGATAATGGTACTTGGGATTTAGTATCTTGCTTTGCAGAAAAGAAGGCCATTGGATGTAAATGGGTGTTCGCTATCAAGGTTGATCATGATGGAGCAATGCCTTGGTTGAGTGTTGTGTTTGTCTTGTTGCGAAAGGTTATGTCCAAATCTATGAAATTGATTATTCAAATACATTTTCTCCCGACTTTTTTTTTCATGGCTGCTACCCATGATTGGCCTTTACATGAGTTTGACATACATGAGCTTGACATCAAGAATGCTTTTCTACATGGTGATCTTTAGGAGGAGGTTTATATGGAGTAGCCACCTTTGTTGCTTAGGGGGAG

Coding sequence (CDS)

ATGATTGAGGAGATGACTGTTTTAGATGATAATGGTACTTGGGATTTAGTATCTTGCTTTGCAGAAAAGAAGGCCATTGGATGTAAATGGGTGTTCGCTATCAAGGTTGATCATGATGGAGCAATGCCTTGGTTGAGTGTTGTGTTTGTCTTGTTGCGAAAGGTTATGTCCAAATCTATGAAATTGATTATTCAAATACATTTTCTCCCGACTTTTTTTTTCATGGCTGCTACCCATGATTGGCCTTTACATGAGTTTGACATACATGAGCTTGACATCAAGAATGCTTTTCTACATGGTGATCTTTAG

Protein sequence

MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVMSKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL*
Homology
BLAST of CSPI05G18890 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07
Identity = 35/108 (32.41%), Postives = 53/108 (49.07%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVMSKSM 60
           M EEM  L  NGT+ LV     K+ + CKWVF +K D D  +       V+      K +
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  KL------IIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
                   ++++  + T   +AA+ D      ++ +LD+K AFLHGDL
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLD-----LEVEQLDVKTAFLHGDL 932

BLAST of CSPI05G18890 vs. ExPASy TrEMBL
Match: A0A061ECC7 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao OX=3641 GN=TCM_009017 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           M+EEM  LD NGTWDLV   A KKAIGCKWVFA+KV+ DG++  L   FV          
Sbjct: 276 MVEEMVALDGNGTWDLVDLPAGKKAIGCKWVFAVKVNSDGSVARLKGRFVAKGYAQTYGV 335

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + +++ +  F  MAAT+DWPL     H+LDIKNAFLHGDL
Sbjct: 336 DYSDTFSPVAKLNSVRLFISMAATYDWPL-----HQLDIKNAFLHGDL 378

BLAST of CSPI05G18890 vs. ExPASy TrEMBL
Match: A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           MIEEMT LDDNGTWDLVS    KKAIGCKWVF++KV+ +G +P      V          
Sbjct: 492 MIEEMTALDDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGI 551

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +  L++++  +  F  MAATH+W L     H+L+IKN FLHGDL
Sbjct: 552 DYSDTFSLVVKLTSIRLFLSMAATHNWSL-----HQLNIKNVFLHGDL 594

BLAST of CSPI05G18890 vs. ExPASy TrEMBL
Match: A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           MIEEMT L DNGTWDLVS    KKAIGCKWVF++KV+ +G +P      V          
Sbjct: 373 MIEEMTALYDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGI 432

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +  L++++  +  F  MAATH+W L     H+L+IKN FLHGDL
Sbjct: 433 DYSDTFSLVVKLTSIRLFLSMAATHNWSL-----HQLNIKNVFLHGDL 475

BLAST of CSPI05G18890 vs. ExPASy TrEMBL
Match: A0A061EJR6 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao OX=3641 GN=TCM_020052 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-16
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           ++EEM  LD NGTWD V   A KK IGCKWVFA+KV+ DG+M  L    V          
Sbjct: 357 IVEEMMALDGNGTWDSVDLLAGKKVIGCKWVFAVKVNPDGSMARLKARLVAKGYAQTYGV 416

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + ++  +  F  M AT DWPL     H+LDIKNAFLHGDL
Sbjct: 417 DYSNTFSPVAKLTSVRLFISMVATCDWPL-----HQLDIKNAFLHGDL 459

BLAST of CSPI05G18890 vs. ExPASy TrEMBL
Match: A0A6L2NF60 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Tanacetum cinerariifolium OX=118510 GN=Tci_055172 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.8e-16
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           MIEEM  LD NGTW LV     KK IGCKWVF++K++HDG++  L    V+         
Sbjct: 569 MIEEMNALDHNGTWALVDLSVHKKEIGCKWVFSVKMNHDGSIARLKDRLVVKGYAQAYVI 628

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S++   + +I  +  F  +AAT+DW L     H+LD+KNAFLHGDL
Sbjct: 629 DYSETFSPVAKISSIRLFISLAATYDWAL-----HQLDVKNAFLHGDL 671

BLAST of CSPI05G18890 vs. NCBI nr
Match: EOX99943.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           M+EEM  LD NGTWDLV   A KKAIGCKWVFA+KV+ DG++  L   FV          
Sbjct: 276 MVEEMVALDGNGTWDLVDLPAGKKAIGCKWVFAVKVNSDGSVARLKGRFVAKGYAQTYGV 335

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + +++ +  F  MAAT+DWPL     H+LDIKNAFLHGDL
Sbjct: 336 DYSDTFSPVAKLNSVRLFISMAATYDWPL-----HQLDIKNAFLHGDL 378

BLAST of CSPI05G18890 vs. NCBI nr
Match: TYK30615.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVM---- 60
           MIEEMT LDDNGTWDLVS    KKAIGCKWVF++KV+ +G +P      V          
Sbjct: 492 MIEEMTALDDNGTWDLVSRPIGKKAIGCKWVFSLKVNTNGTVPRSKARLVAKDYAQTYGI 551

Query: 61  --SKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +  L++++  +  F  MAATH+W L     H+L+IKN FLHGDL
Sbjct: 552 DYSDTFSLVVKLTSIRLFLSMAATHNWSL-----HQLNIKNVFLHGDL 594

BLAST of CSPI05G18890 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 5.7e-17
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFV------LLRK 60
           MIEEMT LDDNGTWDLVS  A KKAIGCKWVFA+K++ DG +  L    V      +   
Sbjct: 854 MIEEMTALDDNGTWDLVSRPAGKKAIGCKWVFAVKMNPDGTVARLKARLVAKGYAQIYGT 913

Query: 61  VMSKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + ++  +  F  MAAT+ W L     H+LDIKNAFLHGDL
Sbjct: 914 DYSDTFSPVAKLTSIRLFLSMAATNKWSL-----HQLDIKNAFLHGDL 956

BLAST of CSPI05G18890 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 5.7e-17
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFV------LLRK 60
           MIEEMT LDDNGTWDLVS  A KKAIGCKWVFA+K++ DG +  L    V      +   
Sbjct: 477 MIEEMTALDDNGTWDLVSRPAGKKAIGCKWVFAVKMNPDGTVARLKARLVAKGYAQIYGT 536

Query: 61  VMSKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + ++  +  F  MAAT+ W L     H+LDIKNAFLHGDL
Sbjct: 537 DYSDTFSPVAKLTSIRLFLSMAATNKWSL-----HQLDIKNAFLHGDL 579

BLAST of CSPI05G18890 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 5.7e-17
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFV------LLRK 60
           MIEEMT LDDNGTWDLVS  A KKAIGCKWVFA+K++ DG +  L    V      +   
Sbjct: 869 MIEEMTALDDNGTWDLVSRPAGKKAIGCKWVFAVKMNPDGTVARLKARLVAKGYAQIYGT 928

Query: 61  VMSKSMKLIIQIHFLPTFFFMAATHDWPLHEFDIHELDIKNAFLHGDL 103
             S +   + ++  +  F  MAAT+ W L     H+LDIKNAFLHGDL
Sbjct: 929 DYSDTFSPVAKLTSIRLFLSMAATNKWSL-----HQLDIKNAFLHGDL 971

BLAST of CSPI05G18890 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 0

Query: 1   MIEEMTVLDDNGTWDLVSCFAEKKAIGCKWVFAIKVDHDGAMPWLSVVFVLLRKVMSKSM 60
           M +E+  ++   TW++ +    KK IGCKWV+ IK + DG +           ++++K  
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKA------RLVAKGY 161

Query: 61  KLIIQIHFLPTFFFMAATHDWPL-------HEFDIHELDIKNAFLHGDL 103
                I F+ TF  +       L       + F +H+LDI NAFL+GDL
Sbjct: 162 TQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109785.6e-0732.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A061ECC71.9e-1850.93Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao OX=3641 GN... [more]
A0A5D3E5M82.1e-1749.07Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027... [more]
A0A5A7T4062.3e-1648.15Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ... [more]
A0A061EJR66.8e-1647.22Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao OX=3641 GN... [more]
A0A6L2NF606.8e-1645.37Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Tanacetum cinerariifolium ... [more]
Match NameE-valueIdentityDescription
EOX99943.13.9e-1850.93Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao][more]
TYK30615.14.4e-1749.07Copia protein [Cucumis melo var. makuwa][more]
XP_031744754.15.7e-1750.93uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus][more]
XP_031744758.15.7e-1750.93uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus][more]
XP_031744753.15.7e-1750.93uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT4G23160.11.0e-0831.19cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18890.1CSPI05G18890.1mRNA