CSPI05G18550 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G18550
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 19570794 .. 19571330 (-)
RNA-Seq ExpressionCSPI05G18550
SyntenyCSPI05G18550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTAGGTAAAAGAGATTAGTTGGTGTGTGTATAAAACCAAAAGGTTAGAGAATTATTAAGAATACAATTTAGAGAGAGGGAATAGTTGGGTTAAAAGAAGGCAAAAAGAAAAAAGGAATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTACCAAAACCAAAAGATAAGGAACAAGTAATTTGATATTATATATTTGAGTATCATTTTAATAATTATGATGATTACTGATTAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAAAACTACATCTCTCTCTCTCTCTCTTAATCCCTTTTCTCTTTTCTTAAACACTACAAATCAATTTAATATTTTTCTAAATTTAC

mRNA sequence

AAAATTAGGTAAAAGAGATTAGTTGGTGTGTGTATAAAACCAAAAGGTTAGAGAATTATTAAGAATACAATTTAGAGAGAGGGAATAGTTGGGTTAAAAGAAGGCAAAAAGAAAAAAGGAATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAAAACTACATCTCTCTCTCTCTCTCTTAATCCCTTTTCTCTTTTCTTAAACACTACAAATCAATTTAATATTTTTCTAAATTTAC

Coding sequence (CDS)

ATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAA

Protein sequence

MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANKNRKGRITHGSMHGDYEDTINMSPIHHN*
Homology
[Close]
BLAST of CSPI05G18550 vs. ExPASy TrEMBL
Match: A0A0A0KP61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526880 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.3e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60
          MAQRVASCRSSSGLLQLFAFLFIFFLL+TVPGCWGATKFVRQKCRRVENWVSANKNRKGR
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60

Query: 61 ITHGSMHGDYEDTINMSPIHHN 83
          ITHGSMHGDYEDTINMSPIHHN
Sbjct: 61 ITHGSMHGDYEDTINMSPIHHN 82

[Close]
BLAST of CSPI05G18550 vs. ExPASy TrEMBL
Match: A0A5D3CUF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001390 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-22
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANK-NRKG 60
          MAQ+  +  S  GL +LF FLFIFFL++TVPG   ATKF++Q+CRRVENWV+ NK +RKG
Sbjct: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60

Query: 61 RITHG----SMHGDYEDTINMSPIHHN 83
          RI  G    SMHGDYEDT NMSPIHHN
Sbjct: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87

[Close]
BLAST of CSPI05G18550 vs. NCBI nr
Match: KGN51398.1 (hypothetical protein Csa_008539 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60
          MAQRVASCRSSSGLLQLFAFLFIFFLL+TVPGCWGATKFVRQKCRRVENWVSANKNRKGR
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60

Query: 61 ITHGSMHGDYEDTINMSPIHHN 83
          ITHGSMHGDYEDTINMSPIHHN
Sbjct: 61 ITHGSMHGDYEDTINMSPIHHN 82

[Close]
BLAST of CSPI05G18550 vs. NCBI nr
Match: TYK15082.1 (hypothetical protein E5676_scaffold45G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANK-NRKG 60
          MAQ+  +  S  GL +LF FLFIFFL++TVPG   ATKF++Q+CRRVENWV+ NK +RKG
Sbjct: 1  MAQKEGTAVSCKGLPKLFTFLFIFFLVITVPGSSAATKFLKQRCRRVENWVAGNKLSRKG 60

Query: 61 RITHG----SMHGDYEDTINMSPIHHN 83
          RI  G    SMHGDYEDT NMSPIHHN
Sbjct: 61 RINDGSNDRSMHGDYEDTTNMSPIHHN 87

The following BLAST results are available for this feature:
BLAST of CSPI05G18550 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G18550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP619.3e-4098.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G526880 PE=4 SV=1[more]
A0A5D3CUF18.7e-2265.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI05G18550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51398.11.9e-3998.78hypothetical protein Csa_008539 [Cucumis sativus][more]
TYK15082.11.8e-2165.52hypothetical protein E5676_scaffold45G001390 [Cucumis melo var. makuwa][more]
BLAST of CSPI05G18550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18550.1CSPI05G18550.1mRNA