CSPI05G17020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G17020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 18326451 .. 18327076 (+)
RNA-Seq Expression	CSPI05G17020
Synteny	CSPI05G17020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGCCTAAATTGGCAGAAGAACTAAATAACGAAACCATAATTAACCACACCCTCTCAACGTCAATTTCACCGGTCATCCAATCCATCACAGCCCATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGAGGAATTTGAACCATTCAATTGTTCAATCACTCAAGCTAAGAACAATTGTTTTTCTTTGTTGATCTATTTACAAATTAAATGACGTGTTTAATTGTGTGATTTAAAATTTGATTTCATTTTGCAAAATCTATAATTATGGTTTTGAACATTCAAGTCGTTAACGTGCATTGTTGTAATATACATGGAAAAATTTATAGAATTAACCTACTTTAATTTTCAC

mRNA sequence

AAAAAGCCTAAATTGGCAGAAGAACTAAATAACGAAACCATAATTAACCACACCCTCTCAACGTCAATTTCACCGGTCATCCAATCCATCACAGCCCATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGAGGAATTTGAACCATTCAATTGTTCAATCACTCAAGCTAAGAACAATTGTTTTTCTTTGTTGATCTATTTACAAATTAAATGACGTGTTTAATTGTGTGATTTAAAATTTGATTTCATTTTGCAAAATCTATAATTATGGTTTTGAACATTCAAGTCGTTAACGTGCATTGTTGTAATATACATGGAAAAATTTATAGAATTAACCTACTTTAATTTTCAC

Coding sequence (CDS)

ATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGA

Protein sequence

MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGKPLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG*

Homology

[Close]

BLAST of CSPI05G17020 vs. ExPASy TrEMBL
Match: A0A0A0KNL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.5e-44
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGK 60
           MAILFNKFSTIPAALLIHFI+CS FSTMFAATNEQLLNVANAKN ITASAAEYQAFDIGK
Sbjct: 1   MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 103
           PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG
Sbjct: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 102

[Close]

BLAST of CSPI05G17020 vs. ExPASy TrEMBL
Match: A0A5D3C3F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002250 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGK 60
           MAI FNKFSTI AALLIH I+CS  ST  AA+NEQLLNVAN  N ITASAAEYQAFDIGK
Sbjct: 1   MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANT-NVITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 103
           PLYR+KEQYHVPDLVVEN+DSISSAP SAPSPSPSP  SPLG
Sbjct: 61  PLYRVKEQYHVPDLVVENLDSISSAPKSAPSPSPSP--SPLG 99

[Close]

BLAST of CSPI05G17020 vs. NCBI nr
Match: TYK05738.1 (hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 9.7e-33
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGK 60
           MAI FNKFSTI AALLIH I+CS  ST  AA+NEQLLNVAN  N ITASAAEYQAFDIGK
Sbjct: 1   MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANT-NVITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 103
           PLYR+KEQYHVPDLVVEN+DSISSAP SAPSPSPSP  SPLG
Sbjct: 61  PLYRVKEQYHVPDLVVENLDSISSAPKSAPSPSPSP--SPLG 99

The following BLAST results are available for this feature:

BLAST of CSPI05G17020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G17020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL8	4.5e-44	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1	[more]
A0A5D3C3F2	4.7e-33	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI05G17020 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05738.1	9.7e-33	83.33	hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G17020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G17020.1	CSPI05G17020.1	mRNA