CSPI05G15160 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G15160
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gibberellin-regulated family protein
Location	Chr5: 15931247 .. 15931470 (-)
RNA-Seq Expression	CSPI05G15160
Synteny	CSPI05G15160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGTGTCAAACTCACCCTTTTAAGTACTTTGGGAGAACAGATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCGACAACGCACAGGAAGCCATGCATGTTCTTCTGCCAAAAATGTTGTGCAAAATGTCTGTGTGTGCCTTCAGGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCT

mRNA sequence

ATGTGTGGTGTCAAACTCACCCTTTTAAGTACTTTGGGAGAACAGATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCGACAACGCACAGGAAGCCATGCATGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCT

Coding sequence (CDS)

ATGTGTGGTGTCAAACTCACCCTTTTAAGTACTTTGGGAGAACAGATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCGACAACGCACAGGAAGCCATGCATGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCT

Protein sequence

MCGVKLTLLSTLGEQIASRNAVIDARRQRTGSHAWTYGNKQECPCYNNWKTQQGGPKCP

Homology

[Close]

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot
Match: Q6NMQ7 (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-09
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQ CPCYNNWKTQQGGPKCP
Sbjct: 78  TYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot
Match: P27057 (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 34  AWTYGNKQECPCYNNWKTQQGGPKCP 60
           A TYGNKQ CPCYNNWKT++GGPKCP
Sbjct: 87  AGTYGNKQSCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot
Match: A8MR46 (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-08
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQ CPCYNNWKT+ GGPKCP
Sbjct: 80  TYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot
Match: Q6GKX7 (Gibberellin-regulated protein 12 OS=Arabidopsis thaliana OX=3702 GN=GASA12 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-07
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYG+K+ECPCYNNW T++GGPKCP
Sbjct: 83  TYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot
Match: P47926 (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-07
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 37 YGNKQECPCYNNWKTQQGGPKCP 60
          YGNKQ CPCYNNWKTQ+G PKCP
Sbjct: 74 YGNKQSCPCYNNWKTQEGKPKCP 96

[Close]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL
Match: A0A1S3CD72 (protein RSI-1-like OS=Cucumis melo OX=3656 GN=LOC103499343 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36 TYGNKQECPCYNNWKTQQGGPKCP 60
          TYGNKQECPCYNNWKTQQGGPKCP
Sbjct: 72 TYGNKQECPCYNNWKTQQGGPKCP 95

[Close]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL
Match: A0A078FY85 (BnaA01g23300D protein OS=Brassica napus OX=3708 GN=BnaA01g23300D PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-07
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQECPCYNNWKTQ+GGPKCP
Sbjct: 81  TYGNKQECPCYNNWKTQEGGPKCP 104

[Close]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL
Match: A0A398AQD8 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A02595 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-07
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQECPCYNNWKTQ+GGPKCP
Sbjct: 81  TYGNKQECPCYNNWKTQEGGPKCP 104

[Close]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL
Match: A0A0K9S1B7 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_005910 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36 TYGNKQECPCYNNWKTQQGGPKCP 60
          TYGNKQ CPCYNNWKTQQGGPKCP
Sbjct: 71 TYGNKQSCPCYNNWKTQQGGPKCP 94

[Close]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL
Match: A0A078I8X6 (BnaC01g30340D protein OS=Brassica napus OX=3708 GN=BnaC01g30340D PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNK+ECPCYNNWKTQ+GGPKCP
Sbjct: 81  TYGNKEECPCYNNWKTQEGGPKCP 104

[Close]

BLAST of CSPI05G15160 vs. NCBI nr
Match: XP_011656217.1 (protein RSI-1-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36 TYGNKQECPCYNNWKTQQGGPKCP 60
          TYGNKQECPCYNNWKTQQGGPKCP
Sbjct: 72 TYGNKQECPCYNNWKTQQGGPKCP 95

[Close]

BLAST of CSPI05G15160 vs. NCBI nr
Match: XP_008460555.1 (PREDICTED: protein RSI-1-like [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36 TYGNKQECPCYNNWKTQQGGPKCP 60
          TYGNKQECPCYNNWKTQQGGPKCP
Sbjct: 72 TYGNKQECPCYNNWKTQQGGPKCP 95

[Close]

BLAST of CSPI05G15160 vs. NCBI nr
Match: RID79891.1 (hypothetical protein BRARA_A02595 [Brassica rapa])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQECPCYNNWKTQ+GGPKCP
Sbjct: 81  TYGNKQECPCYNNWKTQEGGPKCP 104

[Close]

BLAST of CSPI05G15160 vs. NCBI nr
Match: XP_009106131.1 (gibberellin-regulated protein 12-like [Brassica rapa] >CAF2153138.1 unnamed protein product [Brassica napus] >CDY18069.1 BnaA01g23300D [Brassica napus])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQECPCYNNWKTQ+GGPKCP
Sbjct: 81  TYGNKQECPCYNNWKTQEGGPKCP 104

[Close]

BLAST of CSPI05G15160 vs. NCBI nr
Match: KNA25540.1 (hypothetical protein SOVF_005910 [Spinacia oleracea])

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36 TYGNKQECPCYNNWKTQQGGPKCP 60
          TYGNKQ CPCYNNWKTQQGGPKCP
Sbjct: 71 TYGNKQSCPCYNNWKTQQGGPKCP 94

[Close]

BLAST of CSPI05G15160 vs. TAIR 10
Match: AT1G74670.1 (Gibberellin-regulated family protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-10
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQ CPCYNNWKTQQGGPKCP
Sbjct: 78  TYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of CSPI05G15160 vs. TAIR 10
Match: AT3G10185.1 (Gibberellin-regulated family protein )

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-09
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYGNKQ CPCYNNWKT+ GGPKCP
Sbjct: 80  TYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of CSPI05G15160 vs. TAIR 10
Match: AT2G30810.1 (Gibberellin-regulated family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 36  TYGNKQECPCYNNWKTQQGGPKCP 60
           TYG+K+ECPCYNNW T++GGPKCP
Sbjct: 83  TYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of CSPI05G15160 vs. TAIR 10
Match: AT5G15230.1 (GAST1 protein homolog 4 )

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-08
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 37  YGNKQECPCYNNWKTQQGGPKCP 60
           YGNKQ C CYNNWKTQ+GGPKCP
Sbjct: 84  YGNKQVCSCYNNWKTQEGGPKCP 106

[Close]

BLAST of CSPI05G15160 vs. TAIR 10
Match: AT5G15230.2 (GAST1 protein homolog 4 )

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-08
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 37 YGNKQECPCYNNWKTQQGGPKCP 60
          YGNKQ C CYNNWKTQ+GGPKCP
Sbjct: 61 YGNKQVCSCYNNWKTQEGGPKCP 83

The following BLAST results are available for this feature:

BLAST of CSPI05G15160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMQ7	7.6e-09	95.83	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV...	[more]
P27057	2.2e-08	84.62	Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1	[more]
A8MR46	8.4e-08	87.50	Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 ...	[more]
Q6GKX7	3.2e-07	79.17	Gibberellin-regulated protein 12 OS=Arabidopsis thaliana OX=3702 GN=GASA12 PE=3 ...	[more]
P47926	3.2e-07	86.96	Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1	[more]

BLAST of CSPI05G15160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD72	4.3e-07	100.00	protein RSI-1-like OS=Cucumis melo OX=3656 GN=LOC103499343 PE=3 SV=1	[more]
A0A078FY85	9.6e-07	95.83	BnaA01g23300D protein OS=Brassica napus OX=3708 GN=BnaA01g23300D PE=3 SV=1	[more]
A0A398AQD8	9.6e-07	95.83	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A02595 PE=3 SV=1	[more]
A0A0K9S1B7	1.6e-06	95.83	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_005910 PE=3 SV=1	[more]
A0A078I8X6	2.1e-06	91.67	BnaC01g30340D protein OS=Brassica napus OX=3708 GN=BnaC01g30340D PE=3 SV=1	[more]

BLAST of CSPI05G15160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656217.1	8.9e-07	100.00	protein RSI-1-like [Cucumis sativus]	[more]
XP_008460555.1	8.9e-07	100.00	PREDICTED: protein RSI-1-like [Cucumis melo]	[more]
RID79891.1	2.0e-06	95.83	hypothetical protein BRARA_A02595 [Brassica rapa]	[more]
XP_009106131.1	2.0e-06	95.83	gibberellin-regulated protein 12-like [Brassica rapa] >CAF2153138.1 unnamed prot...	[more]
KNA25540.1	3.4e-06	95.83	hypothetical protein SOVF_005910 [Spinacia oleracea]	[more]

BLAST of CSPI05G15160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74670.1	5.4e-10	95.83	Gibberellin-regulated family protein	[more]
AT3G10185.1	5.9e-09	87.50	Gibberellin-regulated family protein	[more]
AT2G30810.1	2.3e-08	79.17	Gibberellin-regulated family protein	[more]
AT5G15230.1	3.9e-08	86.96	GAST1 protein homolog 4	[more]
AT5G15230.2	3.9e-08	86.96	GAST1 protein homolog 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 36..59 e-value: 9.6E-8 score: 32.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G15160.1	CSPI05G15160.1	mRNA