CSPI05G14980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G14980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 15771862 .. 15772029 (-)
RNA-Seq Expression	CSPI05G14980
Synteny	CSPI05G14980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGTGACACGAGTGGAGGAGTGGCAGACGAAGTCACACCAGACAAAGGATGCACGACGATTAGGCAGCCAAGGGGTTGGCATGGACGACTCGAACAAGAAGGGTGCTTGGTTGGGCTCTTTACTTGCAATGTAGCTCGAAGGAAGAAGCGGAGGCTATCGTGA

mRNA sequence

ATGAGCAGTGACACGAGTGGAGGAGTGGCAGACGAAGTCACACCAGACAAAGGATGCACGACGATTAGGCAGCCAAGGGGTTGGCATGGACGACTCGAACAAGAAGGGTGCTTGGTTGGGCTCTTTACTTGCAATGTAGCTCGAAGGAAGAAGCGGAGGCTATCGTGA

Coding sequence (CDS)

ATGAGCAGTGACACGAGTGGAGGAGTGGCAGACGAAGTCACACCAGACAAAGGATGCACGACGATTAGGCAGCCAAGGGGTTGGCATGGACGACTCGAACAAGAAGGGTGCTTGGTTGGGCTCTTTACTTGCAATGTAGCTCGAAGGAAGAAGCGGAGGCTATCGTGA

Protein sequence

MSSDTSGGVADEVTPDKGCTTIRQPRGWHGRLEQEGCLVGLFTCNVARRKKRRLS*

Homology

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BLAST of CSPI05G14980 vs. ExPASy TrEMBL
Match: A0A0A0KRP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420300 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MSSDTSGGVADEVTPDKGCTTIRQPRGWHGRLEQEGCLVGLFTCNVARRKKRRLS 56
          MSSDTSGGVADEVTPDKGCTTIRQPRGWHGRLEQEGCLVGLFTCNVARRKKRRLS
Sbjct: 1  MSSDTSGGVADEVTPDKGCTTIRQPRGWHGRLEQEGCLVGLFTCNVARRKKRRLS 55

The following BLAST results are available for this feature:

BLAST of CSPI05G14980 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G14980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRP0	2.2e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420300 PE=4 SV=1	[more]

BLAST of CSPI05G14980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI05G14980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G14980.1	CSPI05G14980.1	mRNA