CSPI05G14880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G14880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein P200-like isoform X4
Location	Chr5: 15621686 .. 15622072 (-)
RNA-Seq Expression	CSPI05G14880
Synteny	CSPI05G14880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCAATTACTTTACGATCACAATCTGAAATCTCAAATGCCATTGTTCAATCTGAGGAAGCTTTGGTGGAAATCACTCCCACATCCTCCAACAACAATAGAGTTCAATCAGTGTCCTCTTTTCCAGCGGAGCAATTGTTATTGGCAAACCAATTTCCTAGGCAAATAATAGAAGCCATATCTCTAGTTAAAGAACAAAGCATTAGTATGCTAATGGACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAGGAACAGAACAAAGCAAATTGCATTGAGAGCCATGAGAGGCAAATTGTAGAGAAAAATGATATGAGCCTAAGGCAATTGAAGAAAATGTTCAAGGAAGAGTTCCAACATAAAAATCTCCTCAGTTTTAAGTGA

mRNA sequence

ATGATTCCAATTACTTTACGATCACAATCTGAAATCTCAAATGCCATTGTTCAATCTGAGGAAGCTTTGGTGGAAATCACTCCCACATCCTCCAACAACAATAGAGTTCAATCAGTGTCCTCTTTTCCAGCGGAGCAATTGTTATTGGCAAACCAATTTCCTAGGCAAATAATAGAAGCCATATCTCTAGTTAAAGAACAAAGCATTAGTATGCTAATGGACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAGGAACAGAACAAAGCAAATTGCATTGAGAGCCATGAGAGGCAAATTGTAGAGAAAAATGATATGAGCCTAAGGCAATTGAAGAAAATGTTCAAGGAAGAGTTCCAACATAAAAATCTCCTCAGTTTTAAGTGA

Coding sequence (CDS)

ATGATTCCAATTACTTTACGATCACAATCTGAAATCTCAAATGCCATTGTTCAATCTGAGGAAGCTTTGGTGGAAATCACTCCCACATCCTCCAACAACAATAGAGTTCAATCAGTGTCCTCTTTTCCAGCGGAGCAATTGTTATTGGCAAACCAATTTCCTAGGCAAATAATAGAAGCCATATCTCTAGTTAAAGAACAAAGCATTAGTATGCTAATGGACAACTCAGATGCTGAGGAAGAAGAAGATGAAAAGGAACAGAACAAAGCAAATTGCATTGAGAGCCATGAGAGGCAAATTGTAGAGAAAAATGATATGAGCCTAAGGCAATTGAAGAAAATGTTCAAGGAAGAGTTCCAACATAAAAATCTCCTCAGTTTTAAGTGA

Protein sequence

MIPITLRSQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQSISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQHKNLLSFK*

Homology

[Close]

BLAST of CSPI05G14880 vs. ExPASy TrEMBL
Match: A0A1S3CT90 (probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.5e-24
Identity = 80/113 (70.80%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S VKEQ
Sbjct: 518 SQPKIPNAIVQCEEALVEITTTSSNNNAVQS----------LANQFPRPTIEAKSPVKEQ 577

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
            IS+LMDN DA EEEDEKEQNKA CI     QIVEKND+SLRQLKKMFKE+ Q
Sbjct: 578 IISLLMDNLDA-EEEDEKEQNKAKCI-----QIVEKNDVSLRQLKKMFKEKLQ 614

[Close]

BLAST of CSPI05G14880 vs. ExPASy TrEMBL
Match: A0A5A7UN97 (Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00410 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 79/113 (69.91%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S VKEQ
Sbjct: 518 SQPKIPNAIVQCEEALVEITTTSSNNNAVQS----------LANQFPRPTIEAKSPVKEQ 577

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
             S+LMDN DA EEEDEKEQNKA CI     QIVEKND+SLRQLKKMFKE+ Q
Sbjct: 578 ISSLLMDNLDA-EEEDEKEQNKAKCI-----QIVEKNDISLRQLKKMFKEQLQ 614

[Close]

BLAST of CSPI05G14880 vs. ExPASy TrEMBL
Match: A0A0A0KL59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168990 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.4e-20
Identity = 74/116 (63.79%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ EI NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S V+EQ
Sbjct: 55  SQPEIPNAIVQCEEALVEITITSSNNNAVQS----------LANQFPRPTIEAKSPVEEQ 114

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQHKN 124
           +IS+LMDN DAEEEE EKEQN          Q V KND SLRQLKK+FKE+ Q  N
Sbjct: 115 TISLLMDNPDAEEEEAEKEQNPKFV------QFVVKNDTSLRQLKKLFKEKLQLNN 154

[Close]

BLAST of CSPI05G14880 vs. ExPASy TrEMBL
Match: A0A6J1EKY6 (uncharacterized protein LOC111435613 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111435613 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 5   TLRSQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPR-QIIEAISL 64
           T  S  +I N I+Q EEAL+E++  SSNNN +QS+ S  A QL LANQFPR  ++E  S 
Sbjct: 405 TTDSHPDIPNDILQCEEALIEVS-VSSNNNGIQSLPSLAASQLALANQFPRPSVVETKSS 464

Query: 65  VKEQSISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
            KEQ+  +LMDNSDAEEE        ANC    ++Q VEKNDMSLRQL+KMFKE+ Q
Sbjct: 465 HKEQATRLLMDNSDAEEE--------ANCT---QKQTVEKNDMSLRQLRKMFKEQLQ 509

[Close]

BLAST of CSPI05G14880 vs. ExPASy TrEMBL
Match: A0A6J1ELB4 (uncharacterized protein LOC111435613 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435613 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 5   TLRSQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPR-QIIEAISL 64
           T  S  +I N I+Q EEAL+E++  SSNNN +QS+ S  A QL LANQFPR  ++E  S 
Sbjct: 420 TTDSHPDIPNDILQCEEALIEVS-VSSNNNGIQSLPSLAASQLALANQFPRPSVVETKSS 479

Query: 65  VKEQSISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
            KEQ+  +LMDNSDAEEE        ANC    ++Q VEKNDMSLRQL+KMFKE+ Q
Sbjct: 480 HKEQATRLLMDNSDAEEE--------ANCT---QKQTVEKNDMSLRQLRKMFKEQLQ 524

[Close]

BLAST of CSPI05G14880 vs. NCBI nr
Match: XP_038906922.1 (interaptin-like isoform X1 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 79/113 (69.91%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I N  VQ EEALVEI PTSSNNN VQS+ SF A+QL LA QFPR  +   S V+EQ
Sbjct: 590 SQPKIPNDNVQCEEALVEIIPTSSNNNGVQSLPSFGADQLALATQFPRPTVGTKSPVREQ 649

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
           +I +LMDNSDAEEEED KEQ KANCI   E+QIVE NDMSLRQLKKMFKE+ Q
Sbjct: 650 TIRLLMDNSDAEEEEDGKEQEKANCI---EKQIVETNDMSLRQLKKMFKEKLQ 699

[Close]

BLAST of CSPI05G14880 vs. NCBI nr
Match: XP_038906923.1 (interaptin-like isoform X2 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 9.9e-27
Identity = 79/113 (69.91%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I N  VQ EEALVEI PTSSNNN VQS+ SF A+QL LA QFPR  +   S V+EQ
Sbjct: 587 SQPKIPNDNVQCEEALVEIIPTSSNNNGVQSLPSFGADQLALATQFPRPTVGTKSPVREQ 646

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
           +I +LMDNSDAEEEED KEQ KANCI   E+QIVE NDMSLRQLKKMFKE+ Q
Sbjct: 647 TIRLLMDNSDAEEEEDGKEQEKANCI---EKQIVETNDMSLRQLKKMFKEKLQ 696

[Close]

BLAST of CSPI05G14880 vs. NCBI nr
Match: XP_008467303.1 (PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 80/113 (70.80%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S VKEQ
Sbjct: 518 SQPKIPNAIVQCEEALVEITTTSSNNNAVQS----------LANQFPRPTIEAKSPVKEQ 577

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
            IS+LMDN DA EEEDEKEQNKA CI     QIVEKND+SLRQLKKMFKE+ Q
Sbjct: 578 IISLLMDNLDA-EEEDEKEQNKAKCI-----QIVEKNDVSLRQLKKMFKEKLQ 614

[Close]

BLAST of CSPI05G14880 vs. NCBI nr
Match: KAA0055115.1 (putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 79/113 (69.91%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ +I NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S VKEQ
Sbjct: 518 SQPKIPNAIVQCEEALVEITTTSSNNNAVQS----------LANQFPRPTIEAKSPVKEQ 577

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKNDMSLRQLKKMFKEEFQ 121
             S+LMDN DA EEEDEKEQNKA CI     QIVEKND+SLRQLKKMFKE+ Q
Sbjct: 578 ISSLLMDNLDA-EEEDEKEQNKAKCI-----QIVEKNDISLRQLKKMFKEQLQ 614

[Close]

BLAST of CSPI05G14880 vs. NCBI nr
Match: MBC9849949.1 (hypothetical protein [Adiantum capillus-veneris])

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 77/120 (64.17%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 8   SQSEISNAIVQSEEALVEITPTSSNNNRVQSVSSFPAEQLLLANQFPRQIIEAISLVKEQ 67
           SQ EI NAIVQ EEALVEIT TSSNNN VQS          LANQFPR  IEA S V+EQ
Sbjct: 55  SQPEIPNAIVQCEEALVEITITSSNNNAVQS----------LANQFPRPTIEAKSPVEEQ 114

Query: 68  SISMLMDNSDAEEEEDEKEQNKANCIESHERQIVEKND-MSLRQLKKMFKEEFQ--HKNL 125
           +IS+LMDN DAEEEE EKEQNKA  I     Q+V KND  SLRQL+K+FKE+ Q  HK +
Sbjct: 115 TISLLMDNPDAEEEEAEKEQNKAKFI-----QLVVKNDNTSLRQLRKLFKEKLQLNHKKM 159

The following BLAST results are available for this feature:

BLAST of CSPI05G14880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G14880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CT90	6.5e-24	70.80	probable beta-tubulin polyglutamylase OS=Cucumis melo OX=3656 GN=LOC103504683 PE...	[more]
A0A5A7UN97	2.5e-23	69.91	Putative beta-tubulin polyglutamylase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0KL59	7.4e-20	63.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168990 PE=4 SV=1	[more]
A0A6J1EKY6	1.2e-17	55.56	uncharacterized protein LOC111435613 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1ELB4	1.2e-17	55.56	uncharacterized protein LOC111435613 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CSPI05G14880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906922.1	9.9e-27	69.91	interaptin-like isoform X1 [Benincasa hispida]	[more]
XP_038906923.1	9.9e-27	69.91	interaptin-like isoform X2 [Benincasa hispida]	[more]
XP_008467303.1	1.3e-23	70.80	PREDICTED: probable beta-tubulin polyglutamylase [Cucumis melo]	[more]
KAA0055115.1	5.1e-23	69.91	putative beta-tubulin polyglutamylase [Cucumis melo var. makuwa]	[more]
MBC9849949.1	4.0e-20	64.17	hypothetical protein [Adiantum capillus-veneris]	[more]

BLAST of CSPI05G14880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G14880.1	CSPI05G14880.1	mRNA