CSPI05G14840 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G14840
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCCHC-type domain-containing protein
LocationChr5: 15497259 .. 15497819 (-)
RNA-Seq ExpressionCSPI05G14840
SyntenyCSPI05G14840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGCTGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAAGACAAGAAGGCGCGTGCATACATTCTCCAATGCATCCTGGAAGATGTTCTTCTACAAGTCGCTAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGAGTGAAGATGGCGAGAGTTCAAACCTTGAAAAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGGAAGCAAGTTCACCACCCTCGAAGTTGCACTTGAGGATTCATCATTAGTCAAGAAGCTCATCGATTCCGTCCCCGAAAAATATCTTCCCATTGTCGCCGGAATGAGCAATTTCAAGATCTCGAAACCATGCCATTTGAAGAAGCAATTGGACAGATGA

mRNA sequence

ATGGCAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGCTGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAAGACAAGAAGGCGCGTGCATACATTCTCCAATGCATCCTGGAAGATGTTCTTCTACAAGTCGCTAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGAGTGAAGATGGCGAGAGTTCAAACCTTGAAAAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGGAAGCAAGTTCACCACCCTCGAAGTTGCACTTGAGGATTCATCATTAGTCAAGAAGCTCATCGATTCCGTCCCCGAAAAATATCTTCCCATTGTCGCCGGAATGAGCAATTTCAAGATCTCGAAACCATGCCATTTGAAGAAGCAATTGGACAGATGA

Coding sequence (CDS)

ATGGCAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGCTGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGTGGACGATAAAGGCAGAAGCAATCCTCGATGCCCAAGGAGTTTGGGAAGCAATAGAGCCAGCGAGAGGAGCCGAAGTGGATGTGAAGAAAGACAAGAAGGCGCGTGCATACATTCTCCAATGCATCCTGGAAGATGTTCTTCTACAAGTCGCTAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGACAAGGTACTTGGGCAGTGAGCGAGTGAAGATGGCGAGAGTTCAAACCTTGAAAAGTGAGTTTAATGTTCTTCAGATGAAGGAAACCGAGACGATCGATGAGTTTGCAGGAAAAATCAGCGGATTAGGAAGCAAGTTCACCACCCTCGAAGTTGCACTTGAGGATTCATCATTAGTCAAGAAGCTCATCGATTCCGTCCCCGAAAAATATCTTCCCATTGTCGCCGGAATGAGCAATTTCAAGATCTCGAAACCATGCCATTTGAAGAAGCAATTGGACAGATGA

Protein sequence

MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFKISKPCHLKKQLDR*
Homology
BLAST of CSPI05G14840 vs. ExPASy TrEMBL
Match: A0A5A7SWG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G001050 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0

Query: 52  AEVDVKKDKKARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKS 111
           A+V+ KKDK ARAYILQCI +DVLLQ+AKKKTAKEIWDSLK +YLGSERVKMARVQTLK 
Sbjct: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63

Query: 112 EFNVLQMKETETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSN 171
           EF+VLQMKETETIDEFAGKISGL SKF+TL VALEDSSLVKKL+DSVP KYLPI+AG+  
Sbjct: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123

Query: 172 FKISKPCHLKKQLD 186
            KIS PCHLKK+ D
Sbjct: 124 SKISTPCHLKKRSD 137

BLAST of CSPI05G14840 vs. ExPASy TrEMBL
Match: A0A251VAV7 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0090001 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 4.2e-48
Identity = 99/171 (57.89%), Postives = 129/171 (75.44%), Query Frame = 0

Query: 2   ASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKK 61
           A+ S   KE   + +  P LT  NYT W IK EA++DAQG+WE++EP   A +D KK+K 
Sbjct: 40  ATTSLIPKETNSVSLQIPTLTATNYTTWAIKMEAVMDAQGLWESVEPPANAVLDEKKNKT 99

Query: 62  ARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKET 121
           ARA+I Q I EDVLLQVAKKKTAKEIW+SLKTRY+G+ERV+ AR+ TL SEF  L+ K+ 
Sbjct: 100 ARAFIFQAIPEDVLLQVAKKKTAKEIWESLKTRYVGAERVQKARLHTLNSEFESLKRKDE 159

Query: 122 ETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNF 173
           E+ID+FAGK+SGLGSK+ +L   LED  LV+KL+D+VP++YL +VA M  +
Sbjct: 160 ESIDDFAGKLSGLGSKYNSLGSTLEDGKLVRKLLDAVPDRYLQLVASMEQY 210

BLAST of CSPI05G14840 vs. ExPASy TrEMBL
Match: A0A5N6NYJ8 (CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_16352 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 7.2e-48
Identity = 96/172 (55.81%), Postives = 132/172 (76.74%), Query Frame = 0

Query: 1   MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60
           +A+ S   K+   + +  P LT  NYT W IK EA++DAQG+WE+IEP  GA VD KK+K
Sbjct: 412 VATTSATPKDPSSVSLQIPSLTATNYTTWAIKMEAVMDAQGLWESIEPTPGAAVDEKKNK 471

Query: 61  KARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
            +RA+I Q I EDVLLQVAKKKTAKEIWDSLK RY+G++RV+ AR+ TLK+EF +L+MKE
Sbjct: 472 TSRAFIFQAIPEDVLLQVAKKKTAKEIWDSLKIRYMGADRVQKARLHTLKNEFELLKMKE 531

Query: 121 TETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNF 173
            E++DEFAGK++G+ +K+ +L   ++D  LV+KL+DSVP+KYL +VA +  +
Sbjct: 532 GESVDEFAGKLAGMVTKYNSLGYTIKDEDLVRKLLDSVPDKYLQLVASIEQY 583

BLAST of CSPI05G14840 vs. ExPASy TrEMBL
Match: A0A5N6M0G6 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_34946 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 98/172 (56.98%), Postives = 130/172 (75.58%), Query Frame = 0

Query: 1   MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60
           +A+ SQ  KE G + +  P LT  NYT W IK EA++DAQG+WE +EP  GA VD +K+K
Sbjct: 3   VATTSQAPKEAGSVSLQIPTLTATNYTTWAIKMEAVMDAQGLWECVEPVAGATVDERKNK 62

Query: 61  KARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
            ARA+I Q I EDVL+QVAKKKTA EIW+SLK RY+G++RV+ AR+ TLK+EF +L+MKE
Sbjct: 63  TARAFIFQAIPEDVLMQVAKKKTAMEIWESLKARYVGADRVQKARLNTLKTEFELLKMKE 122

Query: 121 TETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNF 173
            E+IDEFAGK+S + +K+ +L   LED  LV KL+DSVPEK+L +VA +  +
Sbjct: 123 GESIDEFAGKLSSMVAKYNSLGSTLEDKVLVGKLLDSVPEKFLQLVASIEQY 174

BLAST of CSPI05G14840 vs. ExPASy TrEMBL
Match: Q0JH75 (Os01g0879800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 96/168 (57.14%), Postives = 128/168 (76.19%), Query Frame = 0

Query: 5   SQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKARA 64
           + ++   G + + YP+LT  NY+ W IK EA ++AQG+W+AIEPA    VD+KKDK+ARA
Sbjct: 17  ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 76

Query: 65  YILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETI 124
            +   + EDVL Q+AKKKTAKE+W+SLKTR+LG ERVK ARVQTLKS+F  L MK+TE+I
Sbjct: 77  CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 136

Query: 125 DEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNF 173
           DEFAGKISGL +K + L V ++D   VKKL+DSVP+K+L ++A +  F
Sbjct: 137 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQF 184

BLAST of CSPI05G14840 vs. NCBI nr
Match: XP_031745073.1 (uncharacterized protein LOC116405251 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 155/173 (89.60%), Postives = 162/173 (93.64%), Query Frame = 0

Query: 1   MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60
           M S SQQTKENGGM ILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK
Sbjct: 1   MTSTSQQTKENGGMPILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60

Query: 61  KARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
           KA AYILQCI EDVLLQ+AKKKTAKEIWDSLKTRYLGSERVKMARVQTLK EFNVL+MKE
Sbjct: 61  KACAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKREFNVLRMKE 120

Query: 121 TETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFK 174
           TE IDEFAGKISGL SKFTTL VAL+DSSLVKKL+DSVP+KYLPIVAG+  F+
Sbjct: 121 TEMIDEFAGKISGLASKFTTLGVALKDSSLVKKLLDSVPDKYLPIVAGIEQFQ 173

BLAST of CSPI05G14840 vs. NCBI nr
Match: XP_031737549.1 (uncharacterized protein LOC116402439 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.8e-78
Identity = 156/173 (90.17%), Postives = 164/173 (94.80%), Query Frame = 0

Query: 1   MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60
           MASISQQTKENGGM ILY MLTPHNYTVWTIKAEAILDAQGV EAIEPARGAEVDVKKDK
Sbjct: 1   MASISQQTKENGGMSILYSMLTPHNYTVWTIKAEAILDAQGVREAIEPARGAEVDVKKDK 60

Query: 61  KARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
           KAR+YILQCI EDVLLQ+AKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEF+VL+MKE
Sbjct: 61  KARSYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFSVLRMKE 120

Query: 121 TETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFK 174
           TETIDEFAGKISGL SKFTTL VALEDSSLVKKL+DSVP+KYLPIV G+  F+
Sbjct: 121 TETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVVGIEQFQ 173

BLAST of CSPI05G14840 vs. NCBI nr
Match: XP_031741713.1 (uncharacterized protein LOC116403908 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 5.1e-72
Identity = 143/160 (89.38%), Postives = 150/160 (93.75%), Query Frame = 0

Query: 14  MLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKARAYILQCILED 73
           M ILYPMLTPHNYTVWTIKAEAIL+AQGVWEAIEPARGAEVDVKKDKKARAYILQCI ED
Sbjct: 1   MSILYPMLTPHNYTVWTIKAEAILNAQGVWEAIEPARGAEVDVKKDKKARAYILQCIPED 60

Query: 74  VLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETIDEFAGKISG 133
           VLLQ+AKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVL+MKE ETIDEF GKISG
Sbjct: 61  VLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLRMKEIETIDEFVGKISG 120

Query: 134 LGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFK 174
           L SKFTTL VALEDSSLV KL+DSVP+KYLPIV G+  F+
Sbjct: 121 LASKFTTLRVALEDSSLVNKLLDSVPDKYLPIVVGIKQFQ 160

BLAST of CSPI05G14840 vs. NCBI nr
Match: XP_011658449.1 (uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 3.6e-70
Identity = 142/173 (82.08%), Postives = 152/173 (87.86%), Query Frame = 0

Query: 1   MASISQQTKENGGMLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDK 60
           MAS+SQQTKENG M I YPML PHNYT+WTIK EAILD Q VWEAIEP RG EVDVKKDK
Sbjct: 1   MASVSQQTKENGRMPIFYPMLCPHNYTMWTIKTEAILDTQEVWEAIEPIRGLEVDVKKDK 60

Query: 61  KARAYILQCILEDVLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKE 120
           KA  YILQCILEDVLLQ+AKKK+AKEIWD+LKTRYLGSERVKMARV  LKSEFNVL+MKE
Sbjct: 61  KACVYILQCILEDVLLQIAKKKSAKEIWDNLKTRYLGSERVKMARVGILKSEFNVLRMKE 120

Query: 121 TETIDEFAGKISGLGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFK 174
           TETIDEFAGKIS L SKFTTL VALEDSSLVKKL+DSVP+KYL IV  +  F+
Sbjct: 121 TETIDEFAGKISKLASKFTTLGVALEDSSLVKKLLDSVPDKYLLIVTRIEQFQ 173

BLAST of CSPI05G14840 vs. NCBI nr
Match: XP_031741709.1 (uncharacterized protein LOC116403904 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 4.0e-69
Identity = 138/160 (86.25%), Postives = 148/160 (92.50%), Query Frame = 0

Query: 14  MLILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPARGAEVDVKKDKKARAYILQCILED 73
           M ILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPA+GAEVDVKKDKK  AYILQCI ED
Sbjct: 1   MTILYPMLTPHNYTVWTIKAEAILDAQGVWEAIEPAKGAEVDVKKDKKVHAYILQCIPED 60

Query: 74  VLLQVAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKSEFNVLQMKETETIDEFAGKISG 133
           VLLQ+AKKKTAKEIWDSLKTRYLGSE+VKMARVQTLKSEFNVL+MKETET+DEF+GKISG
Sbjct: 61  VLLQIAKKKTAKEIWDSLKTRYLGSEQVKMARVQTLKSEFNVLRMKETETVDEFSGKISG 120

Query: 134 LGSKFTTLEVALEDSSLVKKLIDSVPEKYLPIVAGMSNFK 174
           L SKFTTL VALEDSSLVKKL+D VP+KYL IV  +  F+
Sbjct: 121 LASKFTTLGVALEDSSLVKKLLDFVPDKYLLIVTEIEQFQ 160

BLAST of CSPI05G14840 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.8e-04
Identity = 27/83 (32.53%), Postives = 39/83 (46.99%), Query Frame = 0

Query: 19 PMLTPHNYTVWTIKAEAILDAQGVWEAIEPA---------------RGAEVDVKKDKKAR 78
          P+LT  NY  W+++ +AIL A  VWE +E                  G     K+DKKA 
Sbjct: 11 PVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKAL 70

Query: 79 AYILQCILEDVLLQVAKKKTAKE 87
            I Q + ED   +V +  +AK+
Sbjct: 71 CLIYQGLDEDTFEKVVEATSAKD 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWG61.6e-5282.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A251VAV74.2e-4857.89Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g00... [more]
A0A5N6NYJ87.2e-4855.81CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_1635... [more]
A0A5N6M0G61.2e-4756.98Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_34946 PE=4 SV=1[more]
Q0JH751.6e-4757.14Os01g0879800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0879800 PE... [more]
Match NameE-valueIdentityDescription
XP_031745073.12.1e-7889.60uncharacterized protein LOC116405251 [Cucumis sativus][more]
XP_031737549.12.8e-7890.17uncharacterized protein LOC116402439 [Cucumis sativus][more]
XP_031741713.15.1e-7289.38uncharacterized protein LOC116403908 [Cucumis sativus][more]
XP_011658449.13.6e-7082.08uncharacterized protein LOC105436008 [Cucumis sativus][more]
XP_031741709.14.0e-6986.25uncharacterized protein LOC116403904 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT1G48720.12.8e-0432.53unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 57..171
e-value: 4.3E-18
score: 65.4
NoneNo IPR availablePANTHERPTHR34676:SF11ZINC FINGER, CCHC-TYPE-RELATEDcoord: 5..169
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 5..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G14840.1CSPI05G14840.1mRNA