CSPI05G14560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G14560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC110412945
Location	Chr5: 15048118 .. 15048921 (+)
RNA-Seq Expression	CSPI05G14560
Synteny	CSPI05G14560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGATGTTATGGCCAACAACAGTCAAGAGTGGAGAGATGATGGCTTTGGATCGAGAAATGATAGTAAAGGTAGTAGGAGAGATAGAGGAAGGATAGAAGATGGGACGGACAAAAACACAATGGTGGCACTGCAAGGACAAGTAACTGAAATGAATAAGCTTCTTCAGTCAATGGCTTTATCGCAAGTCAATGCTGTGGGTAGTTTAGTACAGATGATAAAAAAAATGTCTAAAGTTGGTTGTGTGGGATGTAGTGGACCTCATGGTGTTGACGGATGCCTATTAAACACAGAGACTGTTACACATGTAAAAAATGACCCTTACTCCAACACCTACAACGTCCAATGGAGAGACCATCCGAATTTCAGTTGGAGGGGTCAGAAGCAAAATGTTCAACAATGAAAAATTGGCCAATCAAATTACAAGGGCGAAACATCTGGTTATCACCAAAGATAGTATCGGGAAAGGCCACAACAACCAAACCAACGCCATGATAACTGTTATAACCCGAATCATTCTTCTTCTTCTTCTTCTTTGTCTTCATCATTAGTGGAAGCCCTTTTTCGCGAGTATATGCAGAGGAATGATGCACTGTTACAAAGTCAAGCCTCATCCATTAAGAACTTGGAGTTGCAACTGGGGCAACTTGCCAACGATGTCTCCGAAAGACCAAAAGGAGCCCTTCTTTGCAATACCAAAACACCAATTCAAAGAGGGGGTTCAAGCAATAAAAAGAGTCAACAAGTGACATTAAGAAGCAGAAGGAACTTGACCATCCACGAACTAGAGTCTGAACAATAA

mRNA sequence

ATGCTGGATGTTATGGCCAACAACAGTCAAGAGTGGAGAGATGATGGCTTTGGATCGAGAAATGATAGTAAAGGTAGTAGGAGAGATAGAGGAAGGATAGAAGATGGGACGGACAAAAACACAATGGTGGCACTGCAAGGACAAGTAACTGAAATGAATAAGCTTCTTCAGTCAATGGCTTTATCGCAAGTCAATGCTGTGGGTAGTTTAGTACAGATGATAAAAAAAATGTCTAAAGTTGGTTGTGTGGGATGTAGTGGACCTCATGGTGTTGACGGATGCCTATTAAACACAGAGACTGTTACACATTATCGGGAAAGGCCACAACAACCAAACCAACGCCATGATAACTGTTATAACCCGAATCATTCTTCTTCTTCTTCTTCTTTGTCTTCATCATTAGTGGAAGCCCTTTTTCGCGAGTATATGCAGAGGAATGATGCACTGTTACAAAGTCAAGCCTCATCCATTAAGAACTTGGAGTTGCAACTGGGGCAACTTGCCAACGATGTCTCCGAAAGACCAAAAGGAGCCCTTCTTTGCAATACCAAAACACCAATTCAAAGAGGGGGTTCAAGCAATAAAAAGAGTCAACAAGTGACATTAAGAAGCAGAAGGAACTTGACCATCCACGAACTAGAGTCTGAACAATAA

Coding sequence (CDS)

ATGCTGGATGTTATGGCCAACAACAGTCAAGAGTGGAGAGATGATGGCTTTGGATCGAGAAATGATAGTAAAGGTAGTAGGAGAGATAGAGGAAGGATAGAAGATGGGACGGACAAAAACACAATGGTGGCACTGCAAGGACAAGTAACTGAAATGAATAAGCTTCTTCAGTCAATGGCTTTATCGCAAGTCAATGCTGTGGGTAGTTTAGTACAGATGATAAAAAAAATGTCTAAAGTTGGTTGTGTGGGATGTAGTGGACCTCATGGTGTTGACGGATGCCTATTAAACACAGAGACTGTTACACATTATCGGGAAAGGCCACAACAACCAAACCAACGCCATGATAACTGTTATAACCCGAATCATTCTTCTTCTTCTTCTTCTTTGTCTTCATCATTAGTGGAAGCCCTTTTTCGCGAGTATATGCAGAGGAATGATGCACTGTTACAAAGTCAAGCCTCATCCATTAAGAACTTGGAGTTGCAACTGGGGCAACTTGCCAACGATGTCTCCGAAAGACCAAAAGGAGCCCTTCTTTGCAATACCAAAACACCAATTCAAAGAGGGGGTTCAAGCAATAAAAAGAGTCAACAAGTGACATTAAGAAGCAGAAGGAACTTGACCATCCACGAACTAGAGTCTGAACAATAA

Protein sequence

MLDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMALSQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERPQQPNQRHDNCYNPNHSSSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSNKKSQQVTLRSRRNLTIHELESEQ*

Homology

[Close]

BLAST of CSPI05G14560 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 95/194 (48.97%), Postives = 120/194 (61.86%), Query Frame = 0


Query: 1   MLDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMA 60
           MLD MA+NSQEWRD+ FGSRNDS+G++ +RGRIEDG D + MVALQGQV EMN +LQSMA
Sbjct: 70  MLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMA 129

Query: 61  LSQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERPQQPNQRHDNCYN 120
           L QVN V S VQM+++++++GCVGC  PH  + C LNTE V + +  P            
Sbjct: 130 LLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDP-----------T 189

Query: 121 PNHSSSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALL 180
           P H       +                  + SQASSIKN+ELQLGQL +D S RPK +  
Sbjct: 190 PIHIMWGGETTQ-----------------ISSQASSIKNMELQLGQLTSDFSRRPKRSFP 234

Query: 181 CNTKTPIQRGGSSN 195
            NT+TP Q    +N
Sbjct: 250 SNTETPNQERDPNN 234

[Close]

BLAST of CSPI05G14560 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 135 VEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 194
           +EALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 195 KKSQQVTLRSRRNLTIHELESEQ 218
           KKSQ VTLRSRRNLTIHELESEQ
Sbjct: 108 KKSQLVTLRSRRNLTIHELESEQ 130

[Close]

BLAST of CSPI05G14560 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 94/225 (41.78%), Postives = 131/225 (58.22%), Query Frame = 0


Query: 2   LDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMAL 61
           LD + NNSQE RDD    +++S      RGR + G D+N +VALQGQVT+M KLLQSMAL
Sbjct: 13  LDAITNNSQELRDDDLRLQHES------RGRTDAGMDRNVIVALQGQVTKMKKLLQSMAL 72

Query: 62  SQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERP------------Q 121
           SQV+AVG+ VQ +K++ ++  VGC  PH  D CLLN E   + +  P            +
Sbjct: 73  SQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNYRGE 132

Query: 122 QPNQRHDNCYNPNHS-------SSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLEL 181
            P+ R  +   P++S       ++++  S S + AL R+YMQR DA +QSQ +SI NLE+
Sbjct: 133 APDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSIINLEI 192

Query: 182 QLGQLANDVSERPKGALLCNTKTPIQRGGSSNKKSQQVTLRSRRN 208
            LGQLA D S RP G+L  N + P    G    K  ++  R  ++
Sbjct: 193 HLGQLAKDFSGRPHGSLPSNIEVPNHNNGVHKNKGMEIPRRHEQH 231

[Close]

BLAST of CSPI05G14560 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 0


Query: 59  MALSQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERPQQPNQR-HDN 118
           MAL +VNA GS +Q++ + +++G V C GP  V G          Y E PQQP Q  + +
Sbjct: 1   MALLEVNAAGSSLQIVHQTAELGFVECGGPGEVSG-----YCPRKYHEWPQQPIQHLNHH 60

Query: 119 CYNPNHSSSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKG 178
             N +HSSSSS  S   +E+LF+EYMQRNDALLQSQA+SIKNLELQ+GQ+AND+S +PKG
Sbjct: 61  ILNQSHSSSSSLPS---MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKG 120

Query: 179 ALLCNTKTPIQRGGSSNKKSQQVTL 203
            L  NT+ PIQ G S  +K Q VTL
Sbjct: 121 TLPSNTEIPIQGGSSGKEKCQAVTL 137

[Close]

BLAST of CSPI05G14560 vs. ExPASy TrEMBL
Match: A0A5A7VLN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00470 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 2   LDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMAL 61
           +D MA+NS EW D GFGSRNDS+ +R +RGR+ED  ++N MVALQGQV EMNKLLQSM L
Sbjct: 1   MDTMASNSHEWTDIGFGSRNDSRENRGNRGRLEDEMNRNAMVALQGQVIEMNKLLQSMTL 60

Query: 62  SQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVT 103
           SQVN     +Q  ++++++GCVGC  PH  D C LN+  +T
Sbjct: 61  SQVN-----IQACQQVNEMGCVGCEAPHNTDACALNSIKMT 96

[Close]

BLAST of CSPI05G14560 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-35
Identity = 95/194 (48.97%), Postives = 120/194 (61.86%), Query Frame = 0


Query: 1   MLDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMA 60
           MLD MA+NSQEWRD+ FGSRNDS+G++ +RGRIEDG D + MVALQGQV EMN +LQSMA
Sbjct: 70  MLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMA 129

Query: 61  LSQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERPQQPNQRHDNCYN 120
           L QVN V S VQM+++++++GCVGC  PH  + C LNTE V + +  P            
Sbjct: 130 LLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDP-----------T 189

Query: 121 PNHSSSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALL 180
           P H       +                  + SQASSIKN+ELQLGQL +D S RPK +  
Sbjct: 190 PIHIMWGGETTQ-----------------ISSQASSIKNMELQLGQLTSDFSRRPKRSFP 234

Query: 181 CNTKTPIQRGGSSN 195
            NT+TP Q    +N
Sbjct: 250 SNTETPNQERDPNN 234

[Close]

BLAST of CSPI05G14560 vs. NCBI nr
Match: KGN51008.1 (hypothetical protein Csa_008461 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-33
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 135 VEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 194
           +EALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 195 KKSQQVTLRSRRNLTIHELESEQ 218
           KKSQ VTLRSRRNLTIHELESEQ
Sbjct: 108 KKSQLVTLRSRRNLTIHELESEQ 130

[Close]

BLAST of CSPI05G14560 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 7.8e-32
Identity = 94/225 (41.78%), Postives = 131/225 (58.22%), Query Frame = 0


Query: 2   LDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMAL 61
           LD + NNSQE RDD    +++S      RGR + G D+N +VALQGQVT+M KLLQSMAL
Sbjct: 13  LDAITNNSQELRDDDLRLQHES------RGRTDAGMDRNVIVALQGQVTKMKKLLQSMAL 72

Query: 62  SQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVTHYRERP------------Q 121
           SQV+AVG+ VQ +K++ ++  VGC  PH  D CLLN E   + +  P            +
Sbjct: 73  SQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNAGNYRGE 132

Query: 122 QPNQRHDNCYNPNHS-------SSSSSLSSSLVEALFREYMQRNDALLQSQASSIKNLEL 181
            P+ R  +   P++S       ++++  S S + AL R+YMQR DA +QSQ +SI NLE+
Sbjct: 133 APDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTSIINLEI 192

Query: 182 QLGQLANDVSERPKGALLCNTKTPIQRGGSSNKKSQQVTLRSRRN 208
            LGQLA D S RP G+L  N + P    G    K  ++  R  ++
Sbjct: 193 HLGQLAKDFSGRPHGSLPSNIEVPNHNNGVHKNKGMEIPRRHEQH 231

[Close]

BLAST of CSPI05G14560 vs. NCBI nr
Match: KAA0066665.1 (hypothetical protein E6C27_scaffold979G00980 [Cucumis melo var. makuwa] >TYK04109.1 hypothetical protein E5676_scaffold2119G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 5.6e-22
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 2   LDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMAL 61
           +D MA+NS EW D GFGSRNDS+ +R +RGR+ED  ++N MVALQGQV EMNKLLQSM L
Sbjct: 1   MDTMASNSHEWTDIGFGSRNDSRENRGNRGRLEDEMNRNAMVALQGQVIEMNKLLQSMTL 60

Query: 62  SQVNAVGSLVQMIKKMSKVGCVGCSGPHGVDGCLLNTETVT 103
           SQVN     +Q  ++++++GCVGC  PH  D C LN+  +T
Sbjct: 61  SQVN-----IQACQQVNEMGCVGCEAPHNTDACALNSIKMT 96

[Close]

BLAST of CSPI05G14560 vs. NCBI nr
Match: KAA0038397.1 (hypothetical protein E6C27_scaffold270G002870 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-17
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MLDVMANNSQEWRDDGFGSRNDSKGSRRDRGRIEDGTDKNTMVALQGQVTEMNKLLQSMA 60
          MLD MA+ S EWRDDGFGSR D++ +R +RGR+ D  D+N MV LQGQVT+MNKLLQSMA
Sbjct: 1  MLDTMASKSWEWRDDGFGSRYDNRKNRGERGRLGDAMDRNVMVVLQGQVTKMNKLLQSMA 60

Query: 61 LSQVNAVGSLVQMIKKM 78
          LSQVNA GS +QM K +
Sbjct: 61 LSQVNAAGSSIQMNKNI 77

The following BLAST results are available for this feature:

BLAST of CSPI05G14560 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G14560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CC26	1.6e-35	48.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KN83	5.3e-34	97.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1	[more]
A0A5D3D2S0	3.8e-32	41.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMN3	1.2e-25	53.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1	[more]
A0A5A7VLN9	2.7e-22	57.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI05G14560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048713.1	3.4e-35	48.97	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KGN51008.1	1.1e-33	97.59	hypothetical protein Csa_008461 [Cucumis sativus]	[more]
KAA0040852.1	7.8e-32	41.78	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
KAA0066665.1	5.6e-22	57.43	hypothetical protein E6C27_scaffold979G00980 [Cucumis melo var. makuwa] >TYK0410...	[more]
KAA0038397.1	2.4e-17	67.53	hypothetical protein E6C27_scaffold270G002870 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G14560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 150..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G14560.1	CSPI05G14560.1	mRNA