CSPI05G13980 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G13980
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein MNN4-like
LocationChr5: 14090607 .. 14093333 (+)
RNA-Seq ExpressionCSPI05G13980
SyntenyCSPI05G13980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGAAAAGAAGGAGCAAGTAAAATCTAGGCTATTGAAGATCAAGCTTAAGGCGTTAAGGCGTCAAGGCGTCAAGGCGTTGGCATGAGAGAGAAGGGAAACAGGGAGCGGGAAGAGCTCCTCAACAAAGTTAAAAAGATAGCCCTCTCTGTAGAGAGAGATAAGACAAAGAAAACTCCAAGCGAACTGTGTGACGAGTTGGAGAAGGAACTGGAAGATGAAAATTCTCTAGAAGAGGTGATAAAACCTTCAAGAAAAAGGAAGGTTACGATGAAGAAGAAGGTCTTCCAGTCTCTAATCTTCAGCATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGGCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGAGGACAGCCACAGTACGACAGTCTTCTCCTATTCTAGAAGTACGCGGGTTCTTCCCCGATTTCTTCATGTTTCCTTCTCTTAAGTTATTAAGTTTCTTTCCTTCTCCCCTCGTATGTTTGTATAAGTTACAAATGACAATTTCATTGTAATTTCTTTTATTTTACTGTCTCCGATTTCTTCAGGTTGCCTATCTTTCCCTCTCCCCTCGTATGTTATGAGTTTAATACTTGTGCCATATGAAAATTTTCAAGAAAAAAAAATTGTAAAAAAGATCTTGGATAGTTGTACTGAGAATAATTAATAACACCC

mRNA sequence

CAAGAAAAGAAGGAGCAAGTAAAATCTAGGCTATTGAAGATCAAGCTTAAGGCGTTAAGGCGTCAAGGCGTCAAGGCGTTGGCATGAGAGAGAAGGGAAACAGGGAGCGGGAAGAGCTCCTCAACAAAGTTAAAAAGATAGCCCTCTCTGTAGAGAGAGATAAGACAAAGAAAACTCCAAGCGAACTGTGTGACGAGTTGGAGAAGGAACTGGAAGATGAAAATTCTCTAGAAGAGGTGATAAAACCTTCAAGAAAAAGGAAGGTTACGATGAAGAAGAAGGTCTTCCAGTCTCTAATCTTCAGCATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGGCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGAGGACAGCCACAGTACGACAGTCTTCTCCTATTCTAGAAGTACGCGGGTTCTTCCCCGATTTCTTCATGTTTCCTTCTCTTAAGTTATTAAGTTTCTTTCCTTCTCCCCTCGTATGTTTGTATAAGTTACAAATGACAATTTCATTGTAATTTCTTTTATTTTACTGTCTCCGATTTCTTCAGGTTGCCTATCTTTCCCTCTCCCCTCGTATGTTATGAGTTTAATACTTGTGCCATATGAAAATTTTCAAGAAAAAAAAATTGTAAAAAAGATCTTGGATAGTTGTACTGAGAATAATTAATAACACCC

Coding sequence (CDS)

ATGAGAGAGAAGGGAAACAGGGAGCGGGAAGAGCTCCTCAACAAAGTTAAAAAGATAGCCCTCTCTGTAGAGAGAGATAAGACAAAGAAAACTCCAAGCGAACTGTGTGACGAGTTGGAGAAGGAACTGGAAGATGAAAATTCTCTAGAAGAGGTGATAAAACCTTCAAGAAAAAGGAAGGTTACGATGAAGAAGAAGGTCTTCCAGTCTCTAATCTTCAGCATCTCAGTCGGCTTGATTCCAGAGGCTTCAATCTTCAACCGTTCGGCAGCGTTCGACGTACGGCAGCTCGTTTTCAGATGGCCACCATACGACAGTCTTCTCCGATTCCAGCGCACGGCTCCAATCGTCCGATCTTCAGCGCACAGTTGA

Protein sequence

MREKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSLEEVIKPSRKRKVTMKKKVFQSLIFSISVGLIPEASIFNRSAAFDVRQLVFRWPPYDSLLRFQRTAPIVRSSAHS*
Homology
BLAST of CSPI05G13980 vs. ExPASy TrEMBL
Match: A0A0A0KN01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G366680 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.4e-55
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0

Query: 1   MREKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSLEEVIKPSRKRK 60
           MREKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSLEEVIKPSRKRK
Sbjct: 1   MREKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSLEEVIKPSRKRK 60

Query: 61  VTMKKKVFQSLIFSISVGLIPEASIFNRSAAFDVRQLVFRWPPYDSLLRFQRTAPIVRSS 120
           VTM KKVFQSLIFSISVGLIPEASIFNRS+AFDVRQLVFRWPPYDSLLRFQRTAPIVRSS
Sbjct: 61  VTM-KKVFQSLIFSISVGLIPEASIFNRSSAFDVRQLVFRWPPYDSLLRFQRTAPIVRSS 120

Query: 121 AHS 124
           AHS
Sbjct: 121 AHS 122

BLAST of CSPI05G13980 vs. ExPASy TrEMBL
Match: A0A5D3DQE5 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001110 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-08
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 2  REKGNRER--EELLNKVKKIALSVERDKTKKTPSELCDELEKELED--ENSLEEVIKPSR 61
          R++GN+     ELLNK +KI LSV++DK KKT    CDELEKELED   +  EEV+KPS+
Sbjct: 23 RKEGNKVEGAGELLNKAEKITLSVKKDKAKKTSEAYCDELEKELEDLSPSEDEEVVKPSK 82

Query: 62 KRKVTMKKKV 68
          KRKVTMK KV
Sbjct: 83 KRKVTMKMKV 92

BLAST of CSPI05G13980 vs. ExPASy TrEMBL
Match: A0A5A7V5R2 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00280 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.3e-08
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 7   REREELLNKVKKIALSVERDKTKKTPS-ELCDELEKELEDENSL-EEVIKPSRKRKVTMK 66
           RE+EELLNKV KI+LS+++ KTKKT S E+ +E EK+LED +S  +EV+KPS+KRKVT+K
Sbjct: 58  REQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEKKLEDLSSFKDEVVKPSKKRKVTIK 117

Query: 67  KKV 68
           KKV
Sbjct: 118 KKV 120

BLAST of CSPI05G13980 vs. ExPASy TrEMBL
Match: A0A5D3BAQ6 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00350 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSL-EEVIKPSRKRK 61
           +EK  ++ EELLN V+KI LSVE+ K KKT  E C+E EKE+ED + L EEV+KP ++RK
Sbjct: 42  KEKRLKDLEELLNIVEKITLSVEKGKAKKTTKEYCEEFEKEMEDSSHLVEEVMKPQKRRK 101

Query: 62  VTMKKKVFQSLI 73
           + +K+K+    +
Sbjct: 102 MIVKRKMLNDQV 113

BLAST of CSPI05G13980 vs. ExPASy TrEMBL
Match: A0A5A7TQG2 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001330 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSL-EEVIKPSRKRK 61
           +EK  ++ EELLN V+KI LS+E+ K KKT  E C+E EKE+ED + L EEV+KP ++RK
Sbjct: 42  KEKRLKDLEELLNIVEKITLSIEKGKAKKTTKEYCEEFEKEMEDSSHLVEEVMKPPKRRK 101

Query: 62  VTMKKKVFQSLI 73
           + +K+K+    +
Sbjct: 102 MIVKRKMLNDQV 113

BLAST of CSPI05G13980 vs. NCBI nr
Match: TYK25886.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-08
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 2  REKGNRER--EELLNKVKKIALSVERDKTKKTPSELCDELEKELED--ENSLEEVIKPSR 61
          R++GN+     ELLNK +KI LSV++DK KKT    CDELEKELED   +  EEV+KPS+
Sbjct: 23 RKEGNKVEGAGELLNKAEKITLSVKKDKAKKTSEAYCDELEKELEDLSPSEDEEVVKPSK 82

Query: 62 KRKVTMKKKV 68
          KRKVTMK KV
Sbjct: 83 KRKVTMKMKV 92

BLAST of CSPI05G13980 vs. NCBI nr
Match: KAA0062287.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 7   REREELLNKVKKIALSVERDKTKKTPS-ELCDELEKELEDENSL-EEVIKPSRKRKVTMK 66
           RE+EELLNKV KI+LS+++ KTKKT S E+ +E EK+LED +S  +EV+KPS+KRKVT+K
Sbjct: 58  REQEELLNKVDKISLSIKKGKTKKTSSEEIYEEFEKKLEDLSSFKDEVVKPSKKRKVTIK 117

Query: 67  KKV 68
           KKV
Sbjct: 118 KKV 120

BLAST of CSPI05G13980 vs. NCBI nr
Match: KAE8637518.1 (hypothetical protein CSA_004751 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-07
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCD-ELEKELEDENSL-EEVIKPSRKR 61
           +E   +ER+ELLNKV+K+ LSV++ K KKT SE  D E+EKELEDE+ L +EV KPS+K+
Sbjct: 61  KETKLKERKELLNKVEKVTLSVKKGKAKKTHSEEYDKEMEKELEDESPLDDEVAKPSKKK 120

Query: 62  KVTMKKKV 68
           KVT+KKKV
Sbjct: 121 KVTIKKKV 128

BLAST of CSPI05G13980 vs. NCBI nr
Match: TYJ96930.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSL-EEVIKPSRKRK 61
           +EK  ++ EELLN V+KI LSVE+ K KKT  E C+E EKE+ED + L EEV+KP ++RK
Sbjct: 42  KEKRLKDLEELLNIVEKITLSVEKGKAKKTTKEYCEEFEKEMEDSSHLVEEVMKPQKRRK 101

Query: 62  VTMKKKVFQSLI 73
           + +K+K+    +
Sbjct: 102 MIVKRKMLNDQV 113

BLAST of CSPI05G13980 vs. NCBI nr
Match: KAA0045354.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 2   REKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSL-EEVIKPSRKRK 61
           +EK  ++ EELLN V+KI LS+E+ K KKT  E C+E EKE+ED + L EEV+KP ++RK
Sbjct: 42  KEKRLKDLEELLNIVEKITLSIEKGKAKKTTKEYCEEFEKEMEDSSHLVEEVMKPPKRRK 101

Query: 62  VTMKKKVFQSLI 73
           + +K+K+    +
Sbjct: 102 MIVKRKMLNDQV 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KN012.4e-5598.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G366680 PE=4 SV=1[more]
A0A5D3DQE54.8e-0861.43Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00... [more]
A0A5A7V5R26.3e-0865.08Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00... [more]
A0A5D3BAQ61.5e-0650.00Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00... [more]
A0A5A7TQG22.6e-0648.61Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00... [more]
Match NameE-valueIdentityDescription
TYK25886.19.9e-0861.43protein MNN4-like [Cucumis melo var. makuwa][more]
KAA0062287.11.3e-0765.08protein MNN4-like [Cucumis melo var. makuwa][more]
KAE8637518.14.9e-0761.76hypothetical protein CSA_004751 [Cucumis sativus][more]
TYJ96930.13.2e-0650.00protein MNN4-like [Cucumis melo var. makuwa][more]
KAA0045354.15.4e-0648.61protein MNN4-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13980.1CSPI05G13980.1mRNA
CSPI05G13980.2CSPI05G13980.2mRNA