CSPI05G13940 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G13940
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTatD related DNase
LocationChr5: 14067616 .. 14070323 (-)
RNA-Seq ExpressionCSPI05G13940
SyntenyCSPI05G13940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCACCTTTAGCTGTCCTGTTTCAGGTGTGCTTATTTTTTCTTATGGTTCTTGATTTTTTGTTAAGTGACTTGGTTGTTGAATTTTCCAGTACACGAGATTTGAATTTTATATAATTCAAAAGAAAAGGATTTGAATTTTATATAATTTAAGAATGTTCAAATTACAAGTTGGGTATGATCTAATGAAATATTGACTTGATCTTGATGAGAATAGCCCCTAAAAGCCACTTTGGATTAGGACATTATTATTTTGTGGAAGTAAAAGCTTACGTGTATATTAATTGATGTTAATGATATAATAAACTAAATTTATTGCATTATGGAAGTAAAAGGGATTAGGACTTAAAGACCAAATAAAAGAACTGAACACTTAATTATTCTTCAGTAAAGGTAGGTGATGGTGAAGTTTACTGCTACTGAAGGACATTTTGCACTTTAGTTTAAATGATATTCTTATTCATATGATTTTGCAGGCTTTAGGATGTGCATGGAGCTAAAGTTCATGTAAATGAGCCAGTTCATCATGGTGTTATAGAGAAATTCTCGTGGGTATATTTTCTATCGGCTTGGTGAACAGGTCCATTTGTTTGGAGTACAAATTATAAAATAAAATATTATGACTGAATTACAGACTTTTCTCGTAAATGATATGAATTGGTTTTTTAATTTTTGAATTATTCTTATTGGCTCTCATAACATTGGTTAGTATGATCACTATGATCTTAAAATTAATCAGGCAATTCATTTTGTTATCTTTAATTGTCCGATCCTATGATGTTAGATTATCTTTACTATATAGACAAGTCACCATATACATGCCATTTACAGTCTCATGCCCAAACCGAGTAATTCAAGCTAACACATATCAATGCAACCACTTTTTAAAACTCAAGGAGATAGTTGAACAGCGTATATAGCACTGTTCTAGTTCAAACTGACACAGATTGAATCCCTCGTTGCCGATGAGCTTCAAGTGGTAACCACCTACTTGCATTTTCGCTTTCCTCATTCGTCACTATTTTGTATCATGTTTCAATCTGTGCCTTATCCGAATGGTTGAAGAAGCATCCTCCAAGTTACCATATTAGGCTTGTTTCTGGCTCAAAACTTCCTGGTTAGCTCCAAGTTACCATATAAAGCATGCATTTAAGATGTATTCTGATAACTTATAAACCATTTATTTCTTACTGTTTTTTGATTTTTTGGGTCTAATGATGATAGTGATACGATCTAGAATAGTTTGTAAATGTTGGTGACTAGTGGATCAATCGAGGAATCAAGGGAAGCCCTTAAAATTGCAGAAACAAATGTTGTTGTCTAAATTCTGTTGAACTTCTTTATACTCTTTTCGAACTTTGTTTCTCTTGGTTCAACCTGTTGTTTTGCTTGTAGGAAGGCTTTTTTGTATTGTGAGTGTGCATCCAACTAGATGCAAGGTTGTTTATTCTTCTATTTTTTATTCAACATTCGTGGTTTCATATAGCCTGTGACATACCTTCCTTTCAGGAATTTGAAGAAAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGGTCTGTATCGATCTCATTTCAAAAAGAGAATTTAAGTCAATCAATCATCCACCATTACTTAAACAAAGCAAAACTGAAGTTCTCTTTTTTTGAAAAAAAAAAAAAAAAAGAAAAAGAGAACCCCTAAGAAGAACTAATCAGCAATAGAAATGCATGAAAATGGTAGTTCAACTTCAAACCAAATCGAACGGAATGGACTTAATAAAGGTTTTCTTTCTCCTTAACTAACTAACAAATATTACGTTTCTTAAAAAATATACAGAAGAACAATATCTGGTACAAGTAAAGTTTTACATAGATCAGTGGCATCTTATGATTTAGCTTGTTGTAGTGCTTTGATTAACATAAAACAAGATTTAAAATGTGATTTTAAAGTTCCATGTTCAAAAATCACCTCTAAGGAAGCTTTAAAAGTTCGGCTGGAGAGATGTCAATGACTTCAAGATTTTGTTGGACAATGGCCAAATTAAGGAGGCCACTGCTACATACAATCTGGGCTGTCTCCAAATTGTTGTATTTACACCATCTTAATGGAATACCTTATTGGAGAGGGTAAGTTTCTCTACTCTTGCGTGTTAGTTAGCTTCAGAAGTGTGCTGTTCGTCAATTTTCTATTTGTTGCCAATTTTTTCACTTTACTTTTAGGTAAATGCAAAGAAGGCCTTCATATTTTTTTTCCAAAATGCAAGATGCTGGAGTATATTCTGATAAAGCAGCATGCAATATATTGATTCAGAAATGCTGTAAATTAGGGGAGAGGTTAGTGATGACACAAATCATGGAGTTCATGAAAGAGAACCGCGTGCTTTGTGCTTCGATGCCCCGTGTTTGTTGAAGGACATGAAACTTTGAAAAGTTGTTAGGTTAGTTATGCTCTACTCTCAAGGTATATACATTTGCCCTCCATGCAAATTGCAAGTTGACAGTAAAGTGCTAAAATATTTGCTGCTATATATTTGCTTAAATTTGATTGGTTATGGTGGATGTTAACTTAACTTGATGTCATTGATTGATGTCATTCACAGAGAGCTATCACTAAACGAATGACTGGAATAGAAGAAATGATTGCAATTGAGTACAATTTGTCAGGGTTCATCTTTGTGACAAGATCTTGA

mRNA sequence

ATGATGGCACCTTTAGCTGTCCTGTTTCAGGATGTGCATGGAGCTAAAGTTCATGTAAATGAGCCAGTTCATCATGGTGTTATAGAGAAATTCTCGTGGGAATTTGAAGAAAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGAAATGCTGTAAATTAGGGGAGAGGTTAGTGATGACACAAATCATGGAGTTCATGAAAGAGAACCGCGTGCTTTGTGCTTCGATGCCCCGTAGAGCTATCACTAAACGAATGACTGGAATAGAAGAAATGATTGCAATTGAGTACAATTTGTCAGGGTTCATCTTTGTGACAAGATCTTGA

Coding sequence (CDS)

ATGATGGCACCTTTAGCTGTCCTGTTTCAGGATGTGCATGGAGCTAAAGTTCATGTAAATGAGCCAGTTCATCATGGTGTTATAGAGAAATTCTCGTGGGAATTTGAAGAAAGTGGTGACCCAGAGACATATTTTCAGGCTCTTCTTTCATTGACCAAAGAGGGAATTGAGAAAGGAAAGAAATGCTGTAAATTAGGGGAGAGGTTAGTGATGACACAAATCATGGAGTTCATGAAAGAGAACCGCGTGCTTTGTGCTTCGATGCCCCGTAGAGCTATCACTAAACGAATGACTGGAATAGAAGAAATGATTGCAATTGAGTACAATTTGTCAGGGTTCATCTTTGTGACAAGATCTTGA

Protein sequence

MMAPLAVLFQDVHGAKVHVNEPVHHGVIEKFSWEFEESGDPETYFQALLSLTKEGIEKGKKCCKLGERLVMTQIMEFMKENRVLCASMPRRAITKRMTGIEEMIAIEYNLSGFIFVTRS*
Homology
[Close]
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match: A0A6J1IY55 (putative deoxyribonuclease TATDN1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481696 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 83  EFEESGDPETYFQALLSLTKEGIEKGK 109

[Close]
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match: A0A6J1F457 (putative deoxyribonuclease TATDN1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441951 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 83  EFEESGDPETYFQALLSLTKEGIEKGK 109

[Close]
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match: A0A5D3DPS7 (Putative deoxyribonuclease TATDN1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004680 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 430 EFEESGDPETYFQALLSLTKEGIEKGK 456

[Close]
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match: A0A6J1J6L3 (putative deoxyribonuclease TATDN1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481696 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34 EFEESGDPETYFQALLSLTKEGIEKGK 61
          EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 72 EFEESGDPETYFQALLSLTKEGIEKGK 98

[Close]
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match: A0A0A0LET6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782690 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 83  EFEESGDPETYFQALLSLTKEGIEKGK 109

[Close]
BLAST of CSPI05G13940 vs. NCBI nr
Match: XP_022934923.1 (putative deoxyribonuclease TATDN1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34 EFEESGDPETYFQALLSLTKEGIEKGK 61
          EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 72 EFEESGDPETYFQALLSLTKEGIEKGK 98

[Close]
BLAST of CSPI05G13940 vs. NCBI nr
Match: XP_023527632.1 (putative deoxyribonuclease TATDN1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34 EFEESGDPETYFQALLSLTKEGIEKGK 61
          EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 72 EFEESGDPETYFQALLSLTKEGIEKGK 98

[Close]
BLAST of CSPI05G13940 vs. NCBI nr
Match: KAA0043804.1 (putative deoxyribonuclease TATDN1 isoform X1 [Cucumis melo var. makuwa] >TYK25329.1 putative deoxyribonuclease TATDN1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 430 EFEESGDPETYFQALLSLTKEGIEKGK 456

[Close]
BLAST of CSPI05G13940 vs. NCBI nr
Match: XP_008442932.1 (PREDICTED: putative deoxyribonuclease TATDN1 isoform X1 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 83  EFEESGDPETYFQALLSLTKEGIEKGK 109

[Close]
BLAST of CSPI05G13940 vs. NCBI nr
Match: XP_022983026.1 (putative deoxyribonuclease TATDN1 isoform X1 [Cucurbita maxima] >XP_022983027.1 putative deoxyribonuclease TATDN1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPETYFQALLSLTKEGIEKGK
Sbjct: 83  EFEESGDPETYFQALLSLTKEGIEKGK 109

[Close]
BLAST of CSPI05G13940 vs. TAIR 10
Match: AT3G52390.1 (TatD related DNase )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPE ++QAL SL KEG++KGK
Sbjct: 83  EFEESGDPEKHYQALFSLAKEGMQKGK 109

[Close]
BLAST of CSPI05G13940 vs. TAIR 10
Match: AT3G52390.2 (TatD related DNase )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 34  EFEESGDPETYFQALLSLTKEGIEKGK 61
           EFEESGDPE ++QAL SL KEG++KGK
Sbjct: 86  EFEESGDPEKHYQALFSLAKEGMQKGK 112

The following BLAST results are available for this feature:
BLAST of CSPI05G13940 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G13940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IY553.7e-05100.00putative deoxyribonuclease TATDN1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1F4573.7e-05100.00putative deoxyribonuclease TATDN1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A5D3DPS73.7e-05100.00Putative deoxyribonuclease TATDN1 isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1J6L33.7e-05100.00putative deoxyribonuclease TATDN1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A0A0LET63.7e-05100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782690 PE=4 SV=1[more]
BLAST of CSPI05G13940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934923.17.6e-05100.00putative deoxyribonuclease TATDN1 isoform X2 [Cucurbita moschata][more]
XP_023527632.17.6e-05100.00putative deoxyribonuclease TATDN1 isoform X2 [Cucurbita pepo subsp. pepo][more]
KAA0043804.17.6e-05100.00putative deoxyribonuclease TATDN1 isoform X1 [Cucumis melo var. makuwa] >TYK2532... [more]
XP_008442932.17.6e-05100.00PREDICTED: putative deoxyribonuclease TATDN1 isoform X1 [Cucumis melo][more]
XP_022983026.17.6e-05100.00putative deoxyribonuclease TATDN1 isoform X1 [Cucurbita maxima] >XP_022983027.1 ... [more]
BLAST of CSPI05G13940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52390.11.6e-0574.07TatD related DNase [more]
AT3G52390.21.6e-0574.07TatD related DNase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13940.1CSPI05G13940.1mRNA