CSPI05G13680 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G13680
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description3-hydroxyisobutyryl-CoA hydrolase-like protein 3
LocationChr5: 13603385 .. 13603732 (-)
RNA-Seq ExpressionCSPI05G13680
SyntenyCSPI05G13680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATCGACAACGTCTGCTTTTCCGTTCTCCACTATACTGATCTCTTCCACCCGCCCGCCCGCCGAAGGATAAAAGAAGAACACAAAAACATGCAAAAATTGCTTGGATTTACAGCTTCACAGTTCTTATTCAAATCCTCTACGCTTCCTCTCTCTCAAACCCTTCCCTCTCTCACTCTCTTCCACATCCATTCTAATTCCGTTTCACGGCGAACCTTGGCGGCCATGGCCGGCACTGACGATCAGTTTGTCAAAGGCAGCGTTCATCCTAATGGCGTCGCTGTTATTACTCTCGATCGCCCCAAAGCTCTCAATGCCATGAACTTAGGTTCATTTCTTTCGTAA

mRNA sequence

ATGGTCATCGACAACGTCTGCTTTTCCGTTCTCCACTATACTGATCTCTTCCACCCGCCCGCCCGCCGAAGGATAAAAGAAGAACACAAAAACATGCAAAAATTGCTTGGATTTACAGCTTCACAGTTCTTATTCAAATCCTCTACGCTTCCTCTCTCTCAAACCCTTCCCTCTCTCACTCTCTTCCACATCCATTCTAATTCCGTTTCACGGCGAACCTTGGCGGCCATGGCCGGCACTGACGATCAGTTTGTCAAAGGCAGCGTTCATCCTAATGGCGTCGCTGTTATTACTCTCGATCGCCCCAAAGCTCTCAATGCCATGAACTTAGGTTCATTTCTTTCGTAA

Coding sequence (CDS)

ATGGTCATCGACAACGTCTGCTTTTCCGTTCTCCACTATACTGATCTCTTCCACCCGCCCGCCCGCCGAAGGATAAAAGAAGAACACAAAAACATGCAAAAATTGCTTGGATTTACAGCTTCACAGTTCTTATTCAAATCCTCTACGCTTCCTCTCTCTCAAACCCTTCCCTCTCTCACTCTCTTCCACATCCATTCTAATTCCGTTTCACGGCGAACCTTGGCGGCCATGGCCGGCACTGACGATCAGTTTGTCAAAGGCAGCGTTCATCCTAATGGCGTCGCTGTTATTACTCTCGATCGCCCCAAAGCTCTCAATGCCATGAACTTAGGTTCATTTCTTTCGTAA

Protein sequence

MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNLGSFLS*
Homology
[Close]
BLAST of CSPI05G13680 vs. ExPASy Swiss-Prot
Match: Q9LK08 (3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g24360 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-10
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 47  SSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALN 106
           S+ +  S+T PS  +     +   RR  + MA   D+FVKG+V+PNGVA+ITLDRPKALN
Sbjct: 9   SARIFFSRTSPSFLIPFSKLSVSHRRKFSVMASGSDEFVKGNVYPNGVALITLDRPKALN 68

Query: 107 AMNL 111
           AMNL
Sbjct: 69  AMNL 72

[Close]
BLAST of CSPI05G13680 vs. ExPASy Swiss-Prot
Match: Q9T0K7 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g13360 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-08
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 53  SQTLPSLTLFHIHSNSVSRRTLAAMAGTD-DQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           SQT  S     +  +   RR  +AMAG   D FVKG+V PNGVA+ITLDR KALNAMNL
Sbjct: 17  SQTFSSQFHQTLRFSISDRRKFSAMAGAGVDDFVKGNVFPNGVALITLDRTKALNAMNL 75

[Close]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match: A0A5A7V2T2 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001320 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match: A0A5D3CHN4 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00130 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match: A0A1S3C725 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497637 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match: A0A1S3C720 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497637 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.3e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match: A0A0A0LF30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005320 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 32  MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP 91
           MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP
Sbjct: 1   MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP 60

Query: 92  NGVAVITLDRPKALNAMNL 111
           NGVAVITLDRPKALNAMNL
Sbjct: 61  NGVAVITLDRPKALNAMNL 79

[Close]
BLAST of CSPI05G13680 vs. NCBI nr
Match: KAA0061570.1 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. NCBI nr
Match: TYK10704.1 (3-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. NCBI nr
Match: XP_008458107.1 (PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. NCBI nr
Match: XP_008458114.1 (PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-52
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MVIDNVCFSVLHYTDLFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60
           M+IDNVCFSV HYT LFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT
Sbjct: 1   MIIDNVCFSVPHYTALFHPPARRRIKEEHKNMQKLLGFTASQFLFKSSTLPLSQTLPSLT 60

Query: 61  LFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           LFHIHSNS+SRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL
Sbjct: 61  LFHIHSNSLSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALNAMNL 110

[Close]
BLAST of CSPI05G13680 vs. NCBI nr
Match: XP_004139338.1 (3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 3.4e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 32  MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP 91
           MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP
Sbjct: 1   MQKLLGFTASQFLFKSSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHP 60

Query: 92  NGVAVITLDRPKALNAMNL 111
           NGVAVITLDRPKALNAMNL
Sbjct: 61  NGVAVITLDRPKALNAMNL 79

[Close]
BLAST of CSPI05G13680 vs. TAIR 10
Match: AT3G24360.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 47  SSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALN 106
           S+ +  S+T PS  +     +   RR  + MA   D+FVKG+V+PNGVA+ITLDRPKALN
Sbjct: 9   SARIFFSRTSPSFLIPFSKLSVSHRRKFSVMASGSDEFVKGNVYPNGVALITLDRPKALN 68

Query: 107 AMNL 111
           AMNL
Sbjct: 69  AMNL 72

[Close]
BLAST of CSPI05G13680 vs. TAIR 10
Match: AT3G24360.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 47  SSTLPLSQTLPSLTLFHIHSNSVSRRTLAAMAGTDDQFVKGSVHPNGVAVITLDRPKALN 106
           S+ +  S+T PS  +     +   RR  + MA   D+FVKG+V+PNGVA+ITLDRPKALN
Sbjct: 9   SARIFFSRTSPSFLIPFSKLSVSHRRKFSVMASGSDEFVKGNVYPNGVALITLDRPKALN 68

Query: 107 AMNL 111
           AMNL
Sbjct: 69  AMNL 72

[Close]
BLAST of CSPI05G13680 vs. TAIR 10
Match: AT4G13360.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-09
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0 

Query: 53  SQTLPSLTLFHIHSNSVSRRTLAAMAGTD-DQFVKGSVHPNGVAVITLDRPKALNAMNL 111
           SQT  S     +  +   RR  +AMAG   D FVKG+V PNGVA+ITLDR KALNAMNL
Sbjct: 17  SQTFSSQFHQTLRFSISDRRKFSAMAGAGVDDFVKGNVFPNGVALITLDRTKALNAMNL 75

The following BLAST results are available for this feature:
BLAST of CSPI05G13680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LK086.0e-1053.133-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial OS=Arabidopsis t... [more]
Q9T0K79.7e-0857.633-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis t... [more]
BLAST of CSPI05G13680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V2T22.3e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3CHN42.3e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3C7252.3e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X2 OS=Cu... [more]
A0A1S3C7202.3e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 OS=Cu... [more]
A0A0A0LF301.6e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005320 PE=3 SV=1[more]
BLAST of CSPI05G13680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061570.14.7e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Cucumis melo var. makuwa][more]
TYK10704.14.7e-5296.363-hydroxyisobutyryl-CoA hydrolase-like protein 3 [Cucumis melo var. makuwa][more]
XP_008458107.14.7e-5296.36PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isofo... [more]
XP_008458114.14.7e-5296.36PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isofo... [more]
XP_004139338.13.4e-34100.003-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial isoform X1 [Cucu... [more]
BLAST of CSPI05G13680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24360.14.3e-1153.13ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
AT3G24360.24.3e-1153.13ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
AT4G13360.16.9e-0957.63ATP-dependent caseinolytic (Clp) protease/crotonase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13680.1CSPI05G13680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006574 valine catabolic process
molecular_function GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity