CSPI05G13620 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G13620
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 13457865 .. 13459914 (+)
RNA-Seq ExpressionCSPI05G13620
SyntenyCSPI05G13620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTATTATCACTTTAAAAAGAAAAAGAAAAGAAAAGAAAGGGAAATTAAAATTTCCTTTCTTCTTCTTCCTCCCGCGCCCCCCTTCTTCTGTTTTTCTTCTTCTTCGTTCTTGTGCCCTAGCCACTTATCACACTCCAACCTCACCGCCAGCCACCTTCAATTTTCTCTTTTTTTTTCGTTCACCCGTCGACATCAGTAGCCCAAACATCGCATCCCAGGCCGCCACATCCCCGCTGCTCGCGTTTCGCCCTTGCGGTTTGTTGAAGCCAAAACCGGTCGTCGCGTTTTTGTTTGCGATTCGTCTCCAACCGTCACGCCTCGAGCCGCTGCGTCCTTCACACTTCGCGACCGACCAAAGCCCAATCGAAGCCGCACGTCTTTTTCTCGTCAGATCCGCGACCGCCACCGCCTCCCATTTTTTTCCCTCTTTTTCGTTCGCTGTAGCCGCCGGCCGCCTCCCCAGCCGCTTCTTCTCCGTTCGTCCACCACAACCGTCGCGCCTCCGTCTGAAATCAAGCCGTCGTCCAGATCTGCGAAGCTGCCGCACCTTCGTCTGCGCCGGTCTTCGTAGCGAAACCAGCCGTTCTAATCTGCCTTGCACGCTGTTGCTTGGGTCGACTGGTGCACTAACGTTTCTGCCTTGCCACGAAGAATATTGGGGTTTTGTGCTGTCAATTGTGGAGAGTGTTTGAATTTTTGGGTTCACGAAAGTTGCTTCAAGTCCAATTCTCTATTTAATTTGAGTAAGTTTTGGAATTTACATTAGAGTAAATGATTGAATGGATTAAATTGCTTGTGGAAGTAATGGGTTTCTGTTTGATTGTGTTTAGGTTCGTTCGTTGCATTGTAGCTTGAAAAAGGAGCTTAAGCAAGGTTAAGGTAAGGGACTTTCTCCTGGACCCATATGTAAATTTAAATAATTAAAACCATTTGACTGTTATATGTGGAATTGAGCAATTTAAAGGGAATGACTGCTAAGATTAAGTCGATGTGGTTAAAGGGACTTAATGGCTTAGATAGTTTTATGTGTGTTGATGAAATGACTAAATTAAAAATGTTTGTTGTTTGAACTAAGGATGCTTGACTCTTATGTTAAAGAATGGATAGTATACGTTTGATTGGATTGAATGAATTGACATAAGTGGCTTATGTATGAGTATACCTAATTGAGAAATCGTTACGCTAAGGTCGGATTATATGTTAGTAAGGGTTCCTAATATTGGACTCAACGATGAAATTGAGATGTATTGTCTGATGGACTGACTGATATGCAAATCTTTTTTTTTACTGTTTGGCTGTATTGAGATGACTGACGGGTACGTATGCTTGGTTGGTTATGATGACTGAACTGATTAAGTTGTGATTTGTTGGTTGTTATGTTAGGGCATAGGTAGTGTCATGTGGTTACTGAACTAACTAAATTAAACTGACTGAATTGAGAAGAGTGATACTTGTGTATAAGTTTATTCGTTGAGGAACGGTTATAACAATGTTGAGTAGGTGTTGGATTGCATAAATGGTCTGTAAGAGTGTTGAACTCAGAGAATGAAATAGTGGTAGCTTGAATTGCAAATTGAACGATTATTAAAATGTTTAGAATGGATTGAGGGGAAAATTGTTAGCTTTTATTGGGATGTGTGCCTTGTAGGTGTCCTACGAGATCACCAATTTTTATGCATCCTTCGAGAGCATTAGACTGATAAGTGTTTATGCAGAACACTAGACTGAAATGTACGTCCCTTGGGTGTTAGACTGATAGACGGTGACTGTGCAAGGTATTCCAATAGGACGTTAACAATTTATTTTTCCCTATCGGGACCAGTAGTGATATTTTTATACTCACCTCTTTTGTTTAATTTTTCAGGCAAAGGTAACAAAGGTGGCAAACTGGCGAGGGGCAGAAAGGAAGTGACATCTTTGTTTTGCTTCCGCTTTATGTTTTTTATGTTTAAAACCTTATGTTTAAGTTTACCTTACGAACTATTACTTTGGTAAATAGTATATATATATATATTTTTTTTAAGTTTTAGTTGCTTGAAACCGGG

mRNA sequence

ATTAATTATTATCACTTTAAAAAGAAAAAGAAAAGAAAAGAAAGGGAAATTAAAATTTCCTTTCTTCTTCTTCCTCCCGCGCCCCCCTTCTTCTGTTTTTCTTCTTCTTCGTTCTTGTGCCCTAGCCACTTATCACACTCCAACCTCACCGCCAGCCACCTTCAATTTTCTCTTTTTTTTTCGTTCACCCGTCGACATCAGTAGCCCAAACATCGCATCCCAGGCCGCCACATCCCCGCTGCTCGCGTTTCGCCCTTGCGGTTTGTTGAAGCCAAAACCGGTCGTCGCGTTTTTGTTTGCGATTCGTCTCCAACCGTCACGCCTCGAGCCGCTGCGTCCTTCACACTTCGCGACCGACCAAAGCCCAATCGAAGCCGCACGTCTTTTTCTCGTCAGATCCGCGACCGCCACCGCCTCCCATTTTTTTCCCTCTTTTTCGTTCGCTGTAGCCGCCGGCCGCCTCCCCAGCCGCTTCTTCTCCGTTCGTCCACCACAACCGTCGCGCCTCCGTCTGAAATCAAGCCGTCGTCCAGATCTGCGAAGCTGCCGCACCTTCGTCTGCGCCGGTCTTCGTAGCGAAACCAGCCGTTCTAATCTGCCTTGCACGCTGTTGCTTGGGTCGACTGGTGCACTAACGTTTCTGCCTTGCCACGAAGAATATTGGGGTTTTGTGCTGTCAATTGTGGAGAGTGTTTGAATTTTTGGGTTCACGAAAGTTGCTTCAAGTCCAATTCTCTATTTAATTTGAGTTCGTTCGTTGCATTGTAGCTTGAAAAAGGAGCTTAAGCAAGGTTAAGGTGTCCTACGAGATCACCAATTTTTATGCATCCTTCGAGAGCATTAGACTGATAAGTGTTTATGCAGAACACTAGACTGAAATGTACGTCCCTTGGGTGTTAGACTGATAGACGGTGACTGTGCAAGGTATTCCAATAGGACGTTAACAATTTATTTTTCCCTATCGGGACCAGTAGTGATATTTTTATACTCACCTCTTTTGTTTAATTTTTCAGGCAAAGGTAACAAAGGTGGCAAACTGGCGAGGGGCAGAAAGGAAGTGACATCTTTGTTTTGCTTCCGCTTTATGTTTTTTATGTTTAAAACCTTATGTTTAAGTTTACCTTACGAACTATTACTTTGGTAAATAGTATATATATATATATTTTTTTTAAGTTTTAGTTGCTTGAAACCGGG

Coding sequence (CDS)

TTAATTATTATCACTTTAAAAAGAAAAAGAAAAGAAAAGAAAGGGAAATTAAAATTTCCTTTCTTCTTCTTCCTCCCGCGCCCCCCTTCTTCTGTTTTTCTTCTTCTTCGTTCTTGTGCCCTAGCCACTTATCACACTCCAACCTCACCGCCAGCCACCTTCAATTTTCTCTTTTTTTTTCGTTCACCCGTCGACATCAGTAGCCCAAACATCGCATCCCAGGCCGCCACATCCCCGCTGCTCGCGTTTCGCCCTTGCGGTTTGTTGAAGCCAAAACCGGTCGTCGCGTTTTTGTTTGCGATTCGTCTCCAACCGTCACGCCTCGAGCCGCTGCGTCCTTCACACTTCGCGACCGACCAAAGCCCAATCGAAGCCGCACGTCTTTTTCTCGTCAGATCCGCGACCGCCACCGCCTCCCATTTTTTTCCCTCTTTTTCGTTCGCTGTAGCCGCCGGCCGCCTCCCCAGCCGCTTCTTCTCCGTTCGTCCACCACAACCGTCGCGCCTCCGTCTGAAATCAAGCCGTCGTCCAGATCTGCGAAGCTGCCGCACCTTCGTCTGCGCCGGTCTTCGTAGCGAAACCAGCCGTTCTAATCTGCCTTGCACGCTGTTGCTTGGGTCGACTGGTGCACTAACGTTTCTGCCTTGCCACGAAGAATATTGGGGTTTTGTGCTGTCAATTGTGGAGAGTGTTTGA

Protein sequence

LIIITLKRKRKEKKGKLKFPFFFFLPRPPSSVFLLLRSCALATYHTPTSPPATFNFLFFFRSPVDISSPNIASQAATSPLLAFRPCGLLKPKPVVAFLFAIRLQPSRLEPLRPSHFATDQSPIEAARLFLVRSATATASHFFPSFSFAVAAGRLPSRFFSVRPPQPSRLRLKSSRRPDLRSCRTFVCAGLRSETSRSNLPCTLLLGSTGALTFLPCHEEYWGFVLSIVESV*
Homology
[Close]
BLAST of CSPI05G13620 vs. NCBI nr
Match: KAE8648360.1 (hypothetical protein Csa_024004, partial [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-59
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 69  PNIASQAATSPLLAFRPCGLLKPKPVVAFLFAIRLQPSRLEPLRPSHFATDQSPIEAARL 128
           PNIASQAATSPLLAFRPCGLLKPKPVVAFLFAIRLQPSRLEPLRPSHFATDQSPIEAARL
Sbjct: 1   PNIASQAATSPLLAFRPCGLLKPKPVVAFLFAIRLQPSRLEPLRPSHFATDQSPIEAARL 60

Query: 129 FLVRSATATASHFFPSFSFAVAAGRLPSRFFSVRPPQPSRLRLKSSRRPDLRSCRTFVCA 188
           FLVRSATATASHFFPSFSFAVAAGRLPSRFFSVRPPQPSRLRLKSSRRPDLRSCRTFVCA
Sbjct: 61  FLVRSATATASHFFPSFSFAVAAGRLPSRFFSVRPPQPSRLRLKSSRRPDLRSCRTFVCA 120

Query: 189 GLR 192
           GLR
Sbjct: 121 GLR 123

[Close]
BLAST of CSPI05G13620 vs. NCBI nr
Match: KAE8648168.1 (hypothetical protein Csa_018354 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-13
Identity = 53/74 (71.62%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 143 PSFSFAVAAGR--LPSRFFSVRPPQPSRLRLKSSRRPDLRSCRTFVCAGLRSETSRSNLP 202
           P   FA A+ R   P+   S+R PQPSRLRLKSSRRPDLRS  TFVCAGL  E SRSNLP
Sbjct: 118 PHSPFAPASVRPCPPTTVVSLR-PQPSRLRLKSSRRPDLRSRHTFVCAGLHREISRSNLP 177

Query: 203 CTLLLGSTGALTFL 215
           CTLLLGSTGALT L
Sbjct: 178 CTLLLGSTGALTRL 190

The following BLAST results are available for this feature:
BLAST of CSPI05G13620 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G13620 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G13620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648360.12.1e-59100.00hypothetical protein Csa_024004, partial [Cucumis sativus][more]
KAE8648168.11.3e-1371.62hypothetical protein Csa_018354 [Cucumis sativus][more]
BLAST of CSPI05G13620 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13620.2CSPI05G13620.2mRNA
CSPI05G13620.1CSPI05G13620.1mRNA