Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
mRNA sequence
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
Coding sequence (CDS)
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
Protein sequence
MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLGNKMRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK*
Homology
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match:
A0A5A7SIJ0 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00200 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 2.1e-35
Identity = 91/152 (59.87%), Postives = 108/152 (71.05%), Query Frame = 0
Query: 17 GRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASECRGKGHDDEAHLTC 76
G G RGT+ Q+ AGGTSNT NGTRDKSH KC NKM+HY +EC KG DD AHLT
Sbjct: 19 GCSHGCDRGTKPQNCAGGTSNTDNGTRDKSHIKCFTCNKMKHYTTECHEKGRDDGAHLTR 78
Query: 77 VAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYLDNGASNH 136
++EP LM+ GT I D+ +LL+KE+LL ++Y N+KN EN VWYL+NGASNH
Sbjct: 79 ATDKEPALMI-----GTCIGRDRVGGVLLSKEQLLPKIYYNNKNEENKGVWYLNNGASNH 138
Query: 137 MTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
MT+H EK QELD S TGRVKF + STIQIM K
Sbjct: 139 MTNHHEKLQELDGSVTGRVKFLNESTIQIMGK 165
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match:
A0A5K0VFR7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 77/179 (43.02%), Postives = 107/179 (59.78%), Query Frame = 0
Query: 4 GHRFCGT----DRGRRRGRGRGRGRG----TERQSNAGGTSNTGNGTRDKSHSKCLG-NK 63
GHR G RGR RGRGRG GRG +R S +GG RD+SH +C N+
Sbjct: 280 GHREGGVRSRGGRGRDRGRGRG-GRGDFPLKDRASGSGGDG------RDRSHIRCFNCNE 339
Query: 64 MRHYASECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIR------CDQEDVILLNKER 123
+ HYA C+ +EAHLT + EPTL++ +E ++++ +LLN+E+
Sbjct: 340 LGHYADRCKAPKKKEEAHLTQTDDTEPTLLLAELEEAMPAAPEKQEWQERQEAVLLNEEQ 399
Query: 124 LLLEMYCNDKNGENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
+ E++ + E TD WYLDNGA+NHMT + KF+EL+E+ TG VKFGDGS++QIM K
Sbjct: 400 VWPELHGTEHGKETTDTWYLDNGANNHMTGDKVKFRELNEAITGNVKFGDGSSVQIMGK 451
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match:
A0A251U1A0 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0272931 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 0
Query: 9 GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGT----RDKSHSKCLG-NKMRHYASECR 68
G G R GRG GRGRG N G + GN + RDKSH KC N+ HYASEC+
Sbjct: 250 GGRSGSRGGRGSGRGRGGR---NGGKNYHEGNSSYRKPRDKSHVKCFECNQYGHYASECK 309
Query: 69 G-KGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKNGEN 128
K D E HLT E+EPTL++ V E + + ++LLN+E++ +++ +NG N
Sbjct: 310 NEKKQDPEVHLTRETEDEPTLLLSVCGE------EAQKMVLLNEEKVFPKLH-ERRNGSN 369
Query: 129 TDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
D WYLDNGASNHMT ++ F EL+E+ TG+V+FGDGS ++I K
Sbjct: 370 EDTWYLDNGASNHMTGRKDAFAELNEAVTGQVRFGDGSKVEIRGK 404
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match:
Q10F84 (Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 0
Query: 9 GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
G +RG + GRGRGRGRG ++GG S G+G RDKSH KC + HY+++C K
Sbjct: 195 GANRG-QAGRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254
Query: 69 HDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
EAHL + PTL++ V++ R D +++++ER+ + +K D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314
Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
WYLDNGASNHM+ KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355
BLAST of CSPI05G12740 vs. ExPASy TrEMBL
Match:
Q84SW8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g47410 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 0
Query: 9 GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
G +RG + GRGRGRGRG ++GG S G+G RDKSH KC + HY+++C K
Sbjct: 195 GANRG-QAGRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254
Query: 69 HDDEAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
EAHL + PTL++ V++ R D +++++ER+ + +K D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314
Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
WYLDNGASNHM+ KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355
BLAST of CSPI05G12740 vs. NCBI nr
Match:
XP_031741713.1 (uncharacterized protein LOC116403908 [Cucumis sativus])
HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 138/168 (82.14%), Postives = 144/168 (85.71%), Query Frame = 0
Query: 1 MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
MNKG RF G D RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC NKM HYA
Sbjct: 216 MNKGRRFSGID----RGRWRGRGRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYA 275
Query: 61 SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
E RGKGHD+E+HLTCV EEEPTLMM +SQEGTR RCDQED ILLNKERLL EMYCNDKN
Sbjct: 276 LEYRGKGHDEESHLTCVVEEEPTLMMAMSQEGTRTRCDQEDAILLNKERLLPEMYCNDKN 335
Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
GEN DVWYLDNGASNHM HREKFQELDESFTG+VKFGDG TIQIMEK
Sbjct: 336 GENNDVWYLDNGASNHMIGHREKFQELDESFTGKVKFGDGPTIQIMEK 379
BLAST of CSPI05G12740 vs. NCBI nr
Match:
XP_031741744.1 (uncharacterized protein LOC116403940 [Cucumis sativus])
HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 136/168 (80.95%), Postives = 143/168 (85.12%), Query Frame = 0
Query: 1 MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
MNKG F GTD RGR RGRGRGTERQ++AGGT+NTGNGTRDKSH KC NKM HYA
Sbjct: 127 MNKGRGFSGTD----RGRWRGRGRGTERQNSAGGTTNTGNGTRDKSHIKCFTCNKMGHYA 186
Query: 61 SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
SEC GKG DDEAHLTCV EEEP+LMM +SQEGTR RCDQED ILL+KERLL EMYCND N
Sbjct: 187 SECCGKGRDDEAHLTCVVEEEPSLMMAMSQEGTRTRCDQEDAILLSKERLLPEMYCNDNN 246
Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
GEN DVWYLDNGASNH+T HREKFQELDESFTGRVKFGDGSTIQI K
Sbjct: 247 GENNDVWYLDNGASNHITGHREKFQELDESFTGRVKFGDGSTIQIHGK 290
BLAST of CSPI05G12740 vs. NCBI nr
Match:
XP_031745073.1 (uncharacterized protein LOC116405251 [Cucumis sativus])
HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0
Query: 1 MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
M KG F GTD RGR RGRGRGTERQ++AGGTSNTGNGTRDKSH KC NKM HYA
Sbjct: 229 MTKGREFGGTD----RGRWRGRGRGTERQNSAGGTSNTGNGTRDKSHIKCFTCNKMGHYA 288
Query: 61 SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
SECRGKG D+EAHLTC EEEPTLMM +SQEGTR CDQED ILL+KERLL EMYCN+KN
Sbjct: 289 SECRGKGRDEEAHLTCAVEEEPTLMMAMSQEGTRTICDQEDAILLSKERLLPEMYCNNKN 348
Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGD 159
GEN DVWYLDNGASNHM HR+KFQELDESFTGRVKFGD
Sbjct: 349 GENNDVWYLDNGASNHMAGHRKKFQELDESFTGRVKFGD 383
BLAST of CSPI05G12740 vs. NCBI nr
Match:
XP_031741708.1 (uncharacterized protein LOC116403903 [Cucumis sativus])
HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 131/168 (77.98%), Postives = 135/168 (80.36%), Query Frame = 0
Query: 1 MNKGHRFCGTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 60
MNKG F GTD RGR RGRGRGTE Q++AGGTSNT NGTRDKS KC NKMRHYA
Sbjct: 1 MNKGCGFGGTD----RGRWRGRGRGTEHQNSAGGTSNTRNGTRDKSQIKCFTCNKMRHYA 60
Query: 61 SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 120
SECRGKG DDEAHLTCV EEE MMVVSQEGT RCDQE+ ILL KERLL EMY NDKN
Sbjct: 61 SECRGKGRDDEAHLTCVTEEELASMMVVSQEGTHTRCDQENAILLRKERLLPEMYYNDKN 120
Query: 121 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
GEN VWYLDNGASNHMT HREKF ELD+SFTGRVKFGDG IQ MEK
Sbjct: 121 GENNGVWYLDNGASNHMTGHREKFIELDKSFTGRVKFGDGLIIQFMEK 164
BLAST of CSPI05G12740 vs. NCBI nr
Match:
XP_042450925.1 (uncharacterized protein LOC122035851 [Zingiber officinale])
HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 113/168 (67.26%), Postives = 129/168 (76.79%), Query Frame = 0
Query: 3 KGHRFCGTDRG--RRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYA 62
KG +RG R RGRGRGRGRGT+RQ +AGGTS+ +GTRDK H KC KM HYA
Sbjct: 232 KGRGSSNPNRGNWRGRGRGRGRGRGTQRQDSAGGTSSNNSGTRDKKHIKCFNCEKMGHYA 291
Query: 63 SECRGKGHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDVILLNKERLLLEMYCNDKN 122
SEC K H DEAHLTCVA+EEPTLMM V E + R +++D+ILLN+ERLL EMY N K
Sbjct: 292 SECYSKPHRDEAHLTCVADEEPTLMMTVYHEESHTRHERQDIILLNEERLLPEMYRNAKK 351
Query: 123 GENTDVWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
E+ DVWYLDNGASNHMT HREKFQELDE+ TGRV+FGDGSTI+IM K
Sbjct: 352 EEDQDVWYLDNGASNHMTGHREKFQELDETITGRVRFGDGSTIEIMGK 399
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SIJ0 | 2.1e-35 | 59.87 | Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A5K0VFR7 | 2.2e-24 | 43.02 | Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS11... | [more] |
A0A251U1A0 | 1.1e-23 | 46.06 | Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g02... | [more] |
Q10F84 | 1.8e-21 | 43.21 | Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11... | [more] |
Q84SW8 | 1.8e-21 | 43.21 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... | [more] |
Match Name | E-value | Identity | Description | |