CSPI05G12590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G12590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING/U-box superfamily protein
Location	Chr5: 11884902 .. 11886086 (-)
RNA-Seq Expression	CSPI05G12590
Synteny	CSPI05G12590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAATGGTACAAATGAGGGAACTTAAATAGAGTGTAAATAGCAAAGAAGAAAAGAAAAAGAAATTTTTAGGATAAGTTTTCCATAAATATTTTTTTCATATATACAAATTCTAGCAGTTTTCATCCGATACTTTTATAGTTTAGTTTGGCCGTATACAGCTTCTTGGTTACCCTATTACAGATCTATACTTTTCTTGAAGTTTTAAAGGCTCTTTAGGAGGCATGTTGAAGTGCGGTTCCTGTTTGTTGAAGTTATTTTGTTGTTTGTTGGGTTGAAAGTTGTTGTCTTCATAGGCTTGGTTTTGTTTGTTATGTTATTTTTATTGATATTTTAGTTATTTTACTCCTTTTTGCTCGTAGTATAATTCTCTTCTACTTTGAGCGTTAGTCTCATTTATTATCTAATAAGAGGCTTGTTTTCATTTAAAAGAAATAAAAACTCTCGTTTATTAGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGTGAGCAATTTTCTGATCATATTCTGACTTTTATTTTTTATTCTACTTGATGAAATGTAGAATTTGAGAAGCATTCTGGTATATTAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTTAGTACACATTCTACAATCTACATAATTTTTGGATGATTTCATATTACATTTAACATCACCTATCAACTTCAACTTTTTGGTCAACTGAAGTTTTAGGATAGTTTTAGGATAGTATCATTACAGGTAGTTCAAGAAGTTTTATATTCAAACCACCCCTCTGTTCAAGGTTGATTTTCACTTATTGAGTCTTCTACATATTTTAAGCCCATGTTAAATTATATAATATTAAATTTTTCGCTCATCAAATTCAACTTTTTGCTTGAAAGGGAGAATTTAACAATACTAACAAATTGATACTTTAATTGATTCCTGAGGATGTTTTACTTGTAATTTTCCTCGAATCTTCAGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

mRNA sequence

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

Coding sequence (CDS)

ATGAAAACAATGGAAAATGGTGATCTTGCCATCGATGATGGCATCCATCGAGGAGTGCAGTATCCTTTTGCAGAAAATGAAAAGGTTCTAATTAAGGGAAACAGGAGAACACCAGAAAAATTTGTTGGAAAAGAAGCAGTCATTACATCCCAGTGTCTCAATGGCTGGTATTTGCTAAAAATCATTGGTACTGGAGAGAATGTTCGGTTGCAATATCGATCTCTTAGGAAGATCCTTAACACGACACCAGCTAATGACAATAGCTGTCCTCCACAGCCACTTCAGCACAGTTGCTCATAG

Protein sequence

MKTMENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS*

Homology

[Close]

BLAST of CSPI05G12590 vs. ExPASy Swiss-Prot
Match: Q6DBN5 (U-box domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=PUB62 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

[Close]

BLAST of CSPI05G12590 vs. ExPASy Swiss-Prot
Match: Q58FY4 (U-box domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=PUB63 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.0e-15
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

[Close]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL
Match: A0A5A7SSH6 (RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G001180 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 355 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 414

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 415 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 449

[Close]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL
Match: A0A5D3CRE0 (RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00920 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 355 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 414

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 415 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 449

[Close]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL
Match: A0A1S3C3S2 (uncharacterized protein LOC103496673 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496673 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 580

[Close]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL
Match: A0A1S3C495 (uncharacterized protein LOC103496673 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496673 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 366 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 425

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 426 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 460

[Close]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL
Match: A0A6J1JTN9 (uncharacterized protein LOC111487410 OS=Cucurbita maxima OX=3661 GN=LOC111487410 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGD+AIDDGIHRGVQYPFA NEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 504 ENGDIAIDDGIHRGVQYPFAVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 563

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPAN++SCP QPLQHS S
Sbjct: 564 GENVRLQYRSLRKILNTTPANEDSCPSQPLQHSSS 598

[Close]

BLAST of CSPI05G12590 vs. NCBI nr
Match: XP_031741483.1 (uncharacterized protein LOC101206682 isoform X3 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 281 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 340

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS
Sbjct: 341 GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 375

[Close]

BLAST of CSPI05G12590 vs. NCBI nr
Match: XP_004140426.1 (uncharacterized protein LOC101206682 isoform X1 [Cucumis sativus] >KAE8648109.1 hypothetical protein Csa_004712 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 486 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 545

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS
Sbjct: 546 GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 580

[Close]

BLAST of CSPI05G12590 vs. NCBI nr
Match: XP_008456843.1 (PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 366 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 425

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 426 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 460

[Close]

BLAST of CSPI05G12590 vs. NCBI nr
Match: TYK14433.1 (RING/U-box superfamily protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 355 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 414

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 415 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 449

[Close]

BLAST of CSPI05G12590 vs. NCBI nr
Match: KAA0032189.1 (RING/U-box superfamily protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 5   ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 64
           ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT
Sbjct: 355 ENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGT 414

Query: 65  GENVRLQYRSLRKILNTTPANDNSCPPQPLQHSCS 100
           GENVRLQYRSLRKILNTTPANDNS PPQPLQH+CS
Sbjct: 415 GENVRLQYRSLRKILNTTPANDNSGPPQPLQHTCS 449

[Close]

BLAST of CSPI05G12590 vs. TAIR 10
Match: AT3G19895.1 (RING/U-box superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-32
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 4   MENGDLAIDDGIHRGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIG 63
           +ENGD A DDG+HR V YPFA NEKVLIKGNRRTPEKFVGKEA++TSQCLNGWYLLKI+ 
Sbjct: 461 VENGDPATDDGMHRVVHYPFAVNEKVLIKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVE 520

Query: 64  TGENVRLQYRSLRKILN 81
           +G+NVRLQYRSL+K++N
Sbjct: 521 SGDNVRLQYRSLKKMVN 537

[Close]

BLAST of CSPI05G12590 vs. TAIR 10
Match: AT5G05230.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-17
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 21  YPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRK 78
           +PFA  ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K +   E+V+LQYRSL K
Sbjct: 288 FPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK 344

[Close]

BLAST of CSPI05G12590 vs. TAIR 10
Match: AT2G40640.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLR 76
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K +   E+++LQ+ SL 
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLA 363

Query: 77  KI 79
           KI
Sbjct: 364 KI 365

[Close]

BLAST of CSPI05G12590 vs. TAIR 10
Match: AT2G40640.2 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 17  RGVQYPFAENEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLL 60
           RG+Q+PF+  + ++I+GN+RTP +FVG+ AVI +QCLNGW  L
Sbjct: 304 RGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWLSL 346

The following BLAST results are available for this feature:

BLAST of CSPI05G12590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBN5	2.9e-16	61.40	U-box domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=PUB62 PE=2...	[more]
Q58FY4	7.0e-15	51.61	U-box domain-containing protein 63 OS=Arabidopsis thaliana OX=3702 GN=PUB63 PE=2...	[more]

BLAST of CSPI05G12590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSH6	5.5e-47	97.89	RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CRE0	5.5e-47	97.89	RING/U-box superfamily protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C3S2	5.5e-47	97.89	uncharacterized protein LOC103496673 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C495	5.5e-47	97.89	uncharacterized protein LOC103496673 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JTN9	1.5e-44	93.68	uncharacterized protein LOC111487410 OS=Cucurbita maxima OX=3661 GN=LOC111487410...	[more]

BLAST of CSPI05G12590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741483.1	2.1e-48	100.00	uncharacterized protein LOC101206682 isoform X3 [Cucumis sativus]	[more]
XP_004140426.1	2.1e-48	100.00	uncharacterized protein LOC101206682 isoform X1 [Cucumis sativus] >KAE8648109.1 ...	[more]
XP_008456843.1	1.1e-46	97.89	PREDICTED: uncharacterized protein LOC103496673 isoform X2 [Cucumis melo]	[more]
TYK14433.1	1.1e-46	97.89	RING/U-box superfamily protein isoform 1 [Cucumis melo var. makuwa]	[more]
KAA0032189.1	1.1e-46	97.89	RING/U-box superfamily protein isoform 1 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G12590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19895.1	2.2e-32	79.22	RING/U-box superfamily protein	[more]
AT5G05230.1	2.0e-17	61.40	RING/U-box superfamily protein	[more]
AT2G40640.1	5.0e-16	51.61	RING/U-box superfamily protein	[more]
AT2G40640.2	4.1e-10	55.81	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33644:SF3	RING/U-BOX SUPERFAMILY PROTEIN	coord: 3..97
None	No IPR available	PANTHER	PTHR33644	U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED	coord: 3..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12590.1	CSPI05G12590.1	mRNA