CSPI05G12560 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G12560
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA repair protein XRCC2 homolog isoform X2
LocationChr5: 11823272 .. 11829440 (-)
RNA-Seq ExpressionCSPI05G12560
SyntenyCSPI05G12560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGTCTGGCCCCAATCCATTAGGGTATTTGGCTTTCTCTTGATCAAAAGATCGATCCTCCAACTCCTCCTCTTGCATTCAAGACACCATGTTTCATTTAATTAGATAATTCAATTTTCCTCCCGAGTGTCCTTCCCAAAGGAAGTTTCTTAATAAACGCTCCACTGTTTGAGACACATTTGTCGGCATTAAAAAGATCGATATATAATATTGTGGGAATATGGGAAAGAACTGACTTACTTGAAGTGGCGACCTCCTCGTGATAGATTGTATCTTTTCCATTTCTCCAATTTTTCTTGAATTTTTTCAATTACCTGCTGCCAAAAAAGAGCTTGCTTAGGATAACCACCAAGGGGCAGCCCTAGGTAACAGAGTGGAAGATGAGAGGCTTCACAGTTCAGCTTTGATGCCTCTTCAAACAGCTCATTTTCTTCTATGTTTAAACCTCAAAGCACAGATTTTCCCAATTAATCTTCTGTGTGAAGCTCCACTCAAAGAATTCAATTGTCTTCTTAAGAGTTTCCAGCATTCCATCTTTTCGTATTTACAAAAAATTAATGTGTCATCAGCGATTTGAAGGCAATGGACATGAATACTGATTTTTCCCACCTTGGAACCTTCAAACTTTCCTTTTTCATATAGCCTATTTAACAAGGCACTTAACATTTTGCTGATTAATAAGAAAATGAAGGGTGAAAGTGGGTCTCCTTGAATTCTTCTTGTGGCTTTGATTCTTCCTCTTGGTCTCCCGTTAATGAATATTGAATATTTTGGATTAGAAATACAGCCCATGATCCATGTGATCCATCTAGTATCAAATTTTTTTTCCATGAGAATTTTCTCAAGGAACTCCCAATCTACTCTATCAAAGTCCTGTTCCAAATCCAATTTTAGAATCCATCCTTTCTTCTTTTTAGCACGGTACTCCTCCACGGCTTCATTTGCTATAAGAATTGGATTCAAGATTTGCCTTCCTTCAATGAAAGTGCTGTGTGGGGGTGATTACACTAGGCATGATTCTTTTGAGGTGTTCGGCTAGCACCTTAGCAACAAGCTTAGATGTTAAAGTGGTTAAGCTGATTGGTCTAAAGTCTTGAGCACAGACAGAATCTTCTTTTTTCTGAATTAGGCAGATAAAGTTTCTTTGACGCAAGAGTTTAGCTTCTCATTCCTGAAAAAATCCTCAAACAATTTCTCAAAGTTAACCTTAGTTAAGGGCTTAAAATTCCTTTCCTTGACAAGGCATGCGTTATCTTCCTGGCCAATAAATTTTGTAGTGCTATTTTCTTTTCAATGACGTGATTATTTCTTATTATAAAAAGGAAAAAAGAAAAAGAAAAACTCTTCCCCCTGATGCTTCTTGTAAGTATCCTCAATAGTAAAAGAAACCTAAACTACACTACATGCAAGCCAACGGTAACTCTTTACTCATGCACATGTGATTATCATCCAAAAAGAAATGTGTTCCAACAATGTACAATTGTATTCCTAGTGTTCTGACTATTTTAGATATTTACTCTGCAGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGGTGAGTTTAAGGCTGTAAGGGATTTCTTTTTTCTGTGAAACAAAAAATTACGTGACAGTCTTAACTCTTGAGGAATTATGTTTCTTGTACTTTACTGTTCAATTCAACTAGAATATTTCACTTTTGGTGATCCATAGATTTGCCTGCGTATTTCACATGGTCATGTATGTTGATTTTATGGAATTAATCTCTATTTCATTAATTATTTAGTAGAGGTACAAGTTTATATATAACCATAGAAAAATACACTTAAGGAAATAATATCAAATAATATCTCCGGAATAATATCACCTAAGAATAATCTAATTATATTAATACCCTCCCTCAAACTCAAGGTTGAAATCACAAACTTGAGTTTGCTAAGAACTAAGAAAAGAAACAATATATCTAGAATAGAATAAAAAACCCGAAGAACAAACACACAAAGAACTTCTAGGTTAGAACAAACCCACGAAAAACTTCCGGGATAGAAACATAGATCCTCGTATAGAGATCTATAACAGAACCTAGGAAGAACGAAACAAGAACTTCGGGGGGCAAAATGAAAGAGCAAAACTGAAGCAAAGTAGAATCAAATCAAGACGAAAACAGGGTCGGAATTGGACAGGAGCGTTTTGTCGGATCAGAATGGAACCGAACGAAGTAAACTAGAGCAAGTCAGAATCACACTAAACGGGAAATTTGGGGCGAACAGAACAAAAACTGTACTGAATGGAGCAGAGAGGCTTAGCGGATCTGAACAAAAACAGAATCGAGGCGTCGTTGGATCTGGGCTTCGATCTAAACTTCGAAGGCAGACATGAAGAATGGGTCTGAACAAAATCAGACAGGTCTGGAACAGATTGGAGGCAGACGCAAGGATCTGAGGACATGGGGTTTCATGGATTTTGTCGGGACAACATAAGAAGATGGAGCAACGGCAACGAAACGCAGCGGCAAGCGGAGCTTCTTGGACGACGGACAAAACCAAAACTCTTCGGCTGGGCGTTCGGCTTCAACTGACTAAGGTTCAATCGGCTGCTTGGCTAACGGAAAAACAAGAGGTCGGACGGAGAACTATGAAGGAGATGGTCGGGAAGCAAGGGCGGCGGATGCTAGTGAAAACGAATGGGGTTTCTGGGGTTTGGATGGTGGCAGATTTGAGCAGCAATGAGCGACAAAGGGAAGGTGCAACGGCGGCGGATTTGCAGATCTAAGGGGCGGCTTCAGCTAATGGAGGATGATTCTGAAGGTCGGATCTGGAACATAGGGGATGGTTCTGCCTCTGTCGATGAATGATCAACGGAGGCAGAGAACGGGATGTGGCAGCTAGAATTCAATGAGACAGAAAAACCTAAAGCTCTGATACCATGTTGATTTTATGGAATTAATCTCTATTTCATTAATTATTTAGTAGAGGTAAAAGTTTATATATAACCATAGAAAAATACACTTGAGGAAATAATATCAAATAATATCTCCAAAATAATATCACTTAAGAATAATCTAATTATATTAATAATGTACTTTGACGACTTGTTGCAATTCTCTACGTCTATTATGCATAAAATTGCTTGAAGACTTGTTAGCATATTTTGAGTTCTAAGATGTGAAGCTACTTATCACCAATTCTTTTGTCATTCTTGTCCATTTTTTGGTTGCTTCATTTTCATTCTCTTTTCTTGGATAGGAAACCACTAACTTCACTGTTTCTTCTATAAAGAATAAAGAGAATGATGTTATGCTAGCGTGACCTTGATTTTCAAATTGATCAAATTGTTAGGTATTGATATGAAACAACAATTGTAAGTTTCAGTTTAAATGTGCTAGGAGCATAAGGGTTATCTCTACCTTGGTTTATCATATTGAACTTTAGAATATGAATGTAGATCTCAACTAATCTTCTAATTGTGGGAGAATTTGCAACTAACTGGTCCAACATTAGTTTCGCCTTTTATATTATTGAAAACCTCCGACTTGGATTCAGTGAGAAATAGTTAAACTATGGGCTTTTTGTTTCAATAATTACGTTTCTATGCTTCTTTAGATGATATGACATATTAACCCTGGCGAATTTGTCAGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGGTAATAAAGATAACTAGTCTTTAACCATGAAACATAAAGTATTGCCTGAATGAACAGGGAGATATTTACAAAGTTAAATAACATCATGGTTCTAATTTCTAAAGACAGTGGCCATAAAATATAGGGCTATTTTCAAATATAACAAAATGAACAAAAATATTTACAAAATATCAGTCTGTCTATGATGAACCTTGTAAACCAAGATAGACTACTATTTGTATCTATAATAGTCTAACTTGGTCTTGTAGACACATATAGTAGTCTATCTTAATCTATTATAAATAGATTGTGATATTTTGCTATATTTATAAATATTTTAATAAGTTTTGTTATTTAAAATAATTTTCCTAAAATATAGGATAGTGTGTTGGGGATAACTAAAATTCTGTTTAATTATTATTTGATTTTTGCTTTTTTCTTTTCAAAATCTATAACTTCTCCCACGTATGAAAATTCTTGCTTTGTTATCTATCTATGAAGTGTTTTGAAAGTCCAACAAAAGGAAAAAGAGTATTGTTTGTTATGTTATCATCACCTTCCTCTGAAATCAATTCATCATTTAGTGATTTGCTGGATGCATTGTCCTCACCATTACTCACGGCACATTTCTCTCCCACTATCCTCATCATTACTTTGTTCTATATTTTGGAATCCGATGCTATAGGTTCTATTCCATAGCTATTTGGCTGTTTGTTCGTTGTTTTTTAAAATTAAGCTTATAAATACTCTATCTTTTGATTTCTTTATTTTGTTATCTAGTTTTATGAGTGTTTTCAAATTCCTAGCCAAATTATGAAAACTTAAATTTCTTTATTTCTTTGGACTGCTACCCTTTGTGCGATCTTGTGGATTTTATAGGGAGAACGGAACAATAAGATTTGTAGAGGTATGGAGAGGGATCCTAAGGATCGTTGGTCTCTTGTTCGTTGTCATGTTTTCCATTGGAATTTGTTATCGAGAGTGTTTTGTAATTATTCTTTGGGTCATATTAACTTTTGCTAGAATCCTTTATTGCAACGTTATTTTCTCGAGGCTTCGCTATTGCTGCGCCTTCTAATTTTTTCATTATCTCTCACTGAAATTGTCTATTTTATCAAGAAAAAAGTAAACTTAAAAAAACGATTTTTAAAATCTTGTTTTTGTTTTCTTTTAGAATTTAGCTAGAAATTCTAATCTTAAATTACAAAATGAAAGAAAAAAATATAATTAAATGGTTATCAAACGTGAAAAATCATACAAAACATCATCTAACTAGATTCCATTTGAAGATTTGAGTACCACATTCTATTTTTCTAGACAAATAATGGAAGACTAGTGAAATTTCAGTGAAGATGCCATGTGAATAAATTTTATTCCATTTAAGTGTGGTTCCATAGTACAGGATCCGGGTGATATTCTAAAATTACCTATGAAAGAGATTCATTTGTTTGGGTTTTTGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGGTCTGAATTACATATTATGCTCAAAAGTCTAATGTGGTCTGATTCACTTTCTGTATCAGTCATTAATCTGATACTTTTTTGTTGCCTTTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGTGAGAAACCAAGCTATTTCTCTTAAGCTACTCGTATATAATAAAGTGCCATGAAATCTAGAAGCTAAAGGTATATTGATTTGATATTAAAATACTGATATCATAAATTTTGGAAGATAAAGTTGAACCGCTTACTCTTTTTATTTTCATGAAGTAAGATGTGTCAATCTTGATAACAAAAAAGATGTTTATTTGGTCCCTTTCTTCTAGAATTTGATTCGTTTTGATTCTTATACTTTCAAAATGTTATTTTTAGTTCATATACTTTTAACTTTCATCCATTTTAGTTTAGGTTCATTTTTGTTGTTTTATTATTTTAATTTATTTTGGTTCTTAATTTCAAAAAGTCATTATTTTGATATTTTCATTTTATTTTCAAGTGATTCCTTTTTAGAAGTTCTAACCAAAATCAATCATTAAAGAACATTTTGAAAGTAGAAGAGTAGAGAGAACCAAAGTTAAAACTCAGAAGTACTGGGACTCAAATAAACATTTAGAAAATTGGGAAGCAAAATAAACACTAAAATATGATTTAAACCCAAAAAAAGAAAAAGGAAAAAGAAAGGAAACTATCATTAAACTCAACTTTAAATGAATAGATTGTGGTATTTCCGTAAGTAAAACTAACATGAGAAATTTGGATTTTACATTGTACCTGCAGGCTGGCGTCTTTTCAGTACCC

mRNA sequence

ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC

Coding sequence (CDS)

ATGGGTAGGTCTGGCCCCAATCCATTAGGGAAAGGCTTTTCTCTTGCGAATGTGCTAGAAGCTGCAGTAGAAGAGGTTAGAAAGCTTTTACTAGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACGCAGTTAAACGTGATAAAACTTTATCAGAGTCAGAATTAAAGCATGGGAAACCCGATGGTGGACTAGGTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAAACTCAGATGAACATCTTAAATTGAGCAGTTGTGAGCATCAACCAACATATTCTTCTGAATGGCTGCTACCATCCCTAGGTTTCCTCGATAAATTTATTGTGACAAATGCTGGCGTCTTTTCAGTACCC

Protein sequence

MGRSGPNPLGKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVTNAGVFSVP
Homology
[Close]
BLAST of CSPI05G12560 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK-- 70
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G   
Sbjct: 213 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY-EEKYPANENNRKVSSNDHFSGNVA 272

Query: 71  PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQ-PTYSSEWLLPSLGFLDKF 130
                  +RE+MPS+WQ+FVTH++ +R S ++  L + +     YS EWL P L  +D+F
Sbjct: 273 SKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRF 332

[Close]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match: A0A0A0KMH0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.6e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match: A0A1S3C3R7 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.7e-57
Identity = 111/121 (91.74%), Postives = 118/121 (97.52%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 N 132
           N
Sbjct: 314 N 314

[Close]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match: A0A6J1GYM0 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K+LSE+E +HGK D
Sbjct: 62  KGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHGKTD 121

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWLLPSLG LDKFIV 
Sbjct: 122 GGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLGVLDKFIVK 181

Query: 131 NAGVFSVP 139
           NAGVF VP
Sbjct: 182 NAGVFMVP 189

[Close]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K+LSE+E +HGK D
Sbjct: 189 KGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHGKTD 248

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWLLPSLG LDKFIV 
Sbjct: 249 GGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLGVLDKFIVK 308

Query: 131 NAGVFSVP 139
           NAGVF VP
Sbjct: 309 NAGVFMVP 316

[Close]
BLAST of CSPI05G12560 vs. NCBI nr
Match: XP_031741381.1 (DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 173 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 232

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 233 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 292

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 293 NAGVFSVP 300

[Close]
BLAST of CSPI05G12560 vs. NCBI nr
Match: XP_011655113.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]
BLAST of CSPI05G12560 vs. NCBI nr
Match: KAE8648111.1 (hypothetical protein Csa_004719 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 313

Query: 131 N 132
           N
Sbjct: 314 N 314

[Close]
BLAST of CSPI05G12560 vs. NCBI nr
Match: XP_008456836.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 NAGVFSVP 139
           NAGVFSVP
Sbjct: 314 NAGVFSVP 321

[Close]
BLAST of CSPI05G12560 vs. NCBI nr
Match: XP_008456835.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 7.5e-57
Identity = 111/121 (91.74%), Postives = 118/121 (97.52%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPD 70
           KGFSLANVLEAAVEEVRKLLLVHPSIVIAS+ATIFGDRSS+ V+RDK+LSESEL+HGKPD
Sbjct: 194 KGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDKSLSESELRHGKPD 253

Query: 71  GGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVT 130
           GGLGLYREYMPSAWQSFVTHRVFVR+SDEHL  SSCEHQPTYSSEWLLPSLGF+DKFIVT
Sbjct: 254 GGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWLLPSLGFVDKFIVT 313

Query: 131 N 132
           N
Sbjct: 314 N 314

[Close]
BLAST of CSPI05G12560 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK-- 70
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G   
Sbjct: 213 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY-EEKYPANENNRKVSSNDHFSGNVA 272

Query: 71  PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQ-PTYSSEWLLPSLGFLDKF 130
                  +RE+MPS+WQ+FVTH++ +R S ++  L + +     YS EWL P L  +D+F
Sbjct: 273 SKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRF 332

[Close]
BLAST of CSPI05G12560 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGK-- 70
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ +    A + ++ +S ++   G   
Sbjct: 213 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIY-EEKYPANENNRKVSSNDHFSGNVA 272

Query: 71  PDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQ-PTYSSEWLLPSLGFLDKF 130
                  +RE+MPS+WQ+FVTH++ +R S ++  L + +     YS EWL P L  +D+F
Sbjct: 273 SKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQTGQQNLLAYSLEWLQPQLSRIDRF 332

[Close]
BLAST of CSPI05G12560 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 11  KGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDR 49
           K  SL NV+E  V+E++KLLLVH  +V+A+K TI+ ++
Sbjct: 219 KSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYEEK 256

The following BLAST results are available for this feature:
BLAST of CSPI05G12560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q682D31.8e-1638.52DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S... [more]
BLAST of CSPI05G12560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMH05.6e-66100.00RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4... [more]
A0A1S3C4912.4e-6192.19DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
A0A1S3C3R73.7e-5791.74DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
A0A6J1GYM01.6e-5282.81DNA repair protein XRCC2 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1GZX51.6e-5282.81DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of CSPI05G12560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031741381.11.2e-65100.00DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus][more]
XP_011655113.11.2e-65100.00DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus][more]
KAE8648111.11.7e-61100.00hypothetical protein Csa_004719 [Cucumis sativus][more]
XP_008456836.15.1e-6192.19PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo][more]
XP_008456835.17.5e-5791.74PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo][more]
BLAST of CSPI05G12560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64520.21.3e-1738.52homolog of X-ray repair cross complementing 2 (XRCC2) [more]
AT5G64520.11.3e-1738.52homolog of X-ray repair cross complementing 2 (XRCC2) [more]
AT5G64520.31.6e-0450.00homolog of X-ray repair cross complementing 2 (XRCC2) [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030547DNA repair protein XRCC2PANTHERPTHR46644DNA REPAIR PROTEIN XRCC2coord: 13..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12560.1CSPI05G12560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000724 double-strand break repair via homologous recombination
cellular_component GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component GO:0005657 replication fork
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003677 DNA binding